Wall clock time and date at job start Tue Mar 31 2020 06:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 5 5 C 1.46908 * 110.99837 * 84.99962 * 4 2 1 6 6 C 1.53000 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46831 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00065 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47607 * 119.99437 * 11 9 7 14 14 H 1.48501 * 109.46676 * 239.99816 * 11 9 7 15 15 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 16 16 C 1.38280 * 119.86701 * 80.00187 * 15 2 1 17 17 C 1.38283 * 120.19769 * 179.97438 * 16 15 2 18 18 C 1.38502 * 119.81636 * 359.97438 * 17 16 15 19 19 C 1.39398 * 119.98302 * 0.02562 * 18 17 16 20 20 C 1.38312 * 119.86995 * 259.72339 * 15 2 1 21 21 O 1.35989 * 119.46734 * 179.91728 * 19 18 17 22 22 C 1.43000 * 116.71183 * 327.20340 * 21 19 18 23 23 C 1.50764 * 109.62977 * 46.39587 * 22 21 19 24 24 O 1.21302 * 120.12850 * 148.69816 * 23 22 21 25 25 N 1.35079 * 119.73470 * 328.67878 * 23 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.00898 * 111.00604 * 208.95432 * 4 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 5 4 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 5 4 2 32 32 H 1.09000 * 109.47419 * 299.99657 * 6 5 4 33 33 H 1.09002 * 109.47282 * 60.00347 * 6 5 4 34 34 H 0.96994 * 119.99672 * 180.02562 * 10 9 7 35 35 H 1.08001 * 119.90051 * 359.97044 * 16 15 2 36 36 H 1.08000 * 120.09430 * 179.97438 * 17 16 15 37 37 H 1.07998 * 120.06277 * 0.02562 * 20 15 2 38 38 H 1.09002 * 109.44297 * 166.44600 * 22 21 19 39 39 H 1.08994 * 109.44472 * 286.38397 * 22 21 19 40 40 H 0.97004 * 120.50538 * 181.70098 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3468 6 6 2.5952 -0.5332 -3.5744 7 6 2.6602 0.4057 -4.7514 8 1 2.3650 1.4380 -4.6356 9 6 3.0956 -0.0536 -5.9764 10 7 3.4547 -1.3109 -6.1175 11 14 3.1769 1.1104 -7.4351 12 1 2.7225 2.4609 -7.0168 13 1 4.5753 1.1891 -7.9284 14 1 2.2969 0.6065 -8.5199 15 6 2.0323 -0.7104 1.2306 16 6 2.0656 -2.0924 1.2625 17 6 2.5257 -2.7512 2.3879 18 6 2.9546 -2.0229 3.4851 19 6 2.9211 -0.6297 3.4528 20 6 2.4637 0.0227 2.3213 21 8 3.3431 0.0749 4.5367 22 6 3.1180 -0.5198 5.8175 23 6 3.5363 -1.9679 5.7841 24 8 3.9699 -2.4997 6.7844 25 7 3.4258 -2.6708 4.6359 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 3.5905 -0.9272 -3.3690 33 1 1.9185 -1.3566 -3.8029 34 1 3.7613 -1.6338 -6.9792 35 1 1.7311 -2.6589 0.4060 36 1 2.5506 -3.8307 2.4112 37 1 2.4401 1.1020 2.2913 38 1 3.7018 0.0092 6.5708 39 1 2.0590 -0.4542 6.0669 40 1 3.6685 -3.6096 4.6079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286107076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:43 Heat of formation + Delta-G solvation = -51.523225 kcal Electronic energy + Delta-G solvation = -22113.473165 eV Core-core repulsion = 18699.968557 eV Total energy + Delta-G solvation = -3413.504608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71933 -39.39283 -38.21754 -36.60213 -35.10073 -33.21900 -31.41182 -30.92682 -29.23194 -28.02080 -27.86020 -24.52713 -24.01506 -23.01585 -21.27594 -20.55414 -19.80448 -18.79089 -18.15106 -17.19284 -16.49585 -16.19053 -15.72640 -15.50314 -15.22503 -14.78383 -14.49393 -14.42631 -14.14598 -13.95714 -13.39063 -13.21188 -12.86175 -12.64712 -12.26537 -12.22026 -11.80154 -11.63843 -11.44405 -11.09785 -11.06022 -10.87485 -10.73780 -10.51962 -10.41518 -9.99100 -9.41605 -9.15215 -8.90143 -8.37309 -8.14371 -7.90892 -6.01526 -4.03938 0.78012 1.05148 1.93830 2.39268 2.94122 3.30198 3.37770 3.41436 3.44596 3.63175 4.34359 4.41122 4.51338 4.58980 4.69429 4.75901 4.92921 5.05771 5.24812 5.34820 5.46017 5.51507 5.59258 5.73946 5.84216 5.96172 6.08127 6.16668 6.27469 6.33492 6.36811 6.38967 6.51197 6.52776 6.96456 6.98673 7.38905 7.43546 7.70348 7.78728 7.91579 8.05698 8.41566 9.03604 9.60087 11.09921 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033936 B = 0.002627 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.884780 B =10654.531925 C =10843.010190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.121 3.879 3 H 0.050 0.950 4 N -0.684 5.684 5 C 0.066 3.934 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.069 4.069 16 C -0.087 4.087 17 C -0.121 4.121 18 C 0.083 3.917 19 C 0.074 3.926 20 C -0.102 4.102 21 O -0.303 6.303 22 C 0.051 3.949 23 C 0.490 3.510 24 O -0.518 6.518 25 N -0.657 5.657 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.339 0.661 30 H 0.060 0.940 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -0.263 22.202 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.068 0.932 4 N -0.316 5.316 5 C -0.062 4.062 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.070 4.070 16 C -0.106 4.106 17 C -0.141 4.141 18 C -0.012 4.012 19 C 0.028 3.972 20 C -0.121 4.121 21 O -0.217 6.217 22 C -0.027 4.027 23 C 0.277 3.723 24 O -0.393 6.393 25 N -0.304 5.304 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.117 0.883 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.992 -0.552 22.531 22.889 hybrid contribution 0.971 0.421 -0.590 1.212 sum -3.021 -0.131 21.941 22.148 Atomic orbital electron populations 1.21772 0.93676 1.02498 1.01189 1.20456 0.96112 0.95317 0.86955 0.93176 1.60771 1.33338 1.33987 1.03490 1.22222 0.99733 0.93533 0.90752 1.19068 0.96240 0.95814 0.90094 1.21210 1.43846 0.96365 0.94545 0.92708 1.25003 0.95420 0.95090 0.98872 1.69979 1.44553 1.14335 1.24378 0.86540 0.77634 0.81140 0.82702 1.19768 1.21045 1.20986 1.19951 0.98116 0.93831 0.95139 1.21038 0.97955 0.93902 0.97670 1.20684 1.01165 0.99948 0.92344 1.18031 1.03299 0.90988 0.88915 1.18477 1.01688 0.87677 0.89389 1.20414 0.99433 1.00698 0.91571 1.86256 1.78032 1.45152 1.12262 1.23163 1.04325 0.89462 0.85747 1.21577 0.77851 0.90126 0.82710 1.90814 1.43735 1.71660 1.33091 1.43712 1.64016 1.14515 1.08207 0.91906 0.91968 0.93059 0.84315 0.92147 0.96506 0.96828 0.95615 0.93045 0.83611 0.84859 0.84408 0.83818 0.88342 0.74524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.39 37.16 0.35 -1.25 16 2 C 0.12 1.58 2.81 -68.87 -0.19 1.38 16 3 H 0.05 0.66 7.65 -51.93 -0.40 0.27 16 4 N -0.68 -11.04 5.68 -107.95 -0.61 -11.66 16 5 C 0.07 1.30 5.42 -3.82 -0.02 1.28 16 6 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C -0.07 -0.78 4.72 -104.58 -0.49 -1.28 16 16 C -0.09 -0.92 8.99 -39.55 -0.36 -1.28 16 17 C -0.12 -1.13 9.95 -39.47 -0.39 -1.52 16 18 C 0.08 0.82 6.54 -83.49 -0.55 0.28 16 19 C 0.07 0.79 6.44 -39.09 -0.25 0.54 16 20 C -0.10 -1.09 9.62 -39.50 -0.38 -1.47 16 21 O -0.30 -3.06 10.45 -19.71 -0.21 -3.27 16 22 C 0.05 0.39 7.17 36.04 0.26 0.65 16 23 C 0.49 4.93 7.94 -10.82 -0.09 4.85 16 24 O -0.52 -6.70 17.95 5.54 0.10 -6.60 16 25 N -0.66 -6.02 5.47 -9.66 -0.05 -6.07 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.34 5.41 7.99 -39.29 -0.31 5.09 16 30 H 0.06 1.20 7.44 -51.93 -0.39 0.81 16 31 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.15 1.59 7.70 -52.49 -0.40 1.18 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 1.33 8.03 -52.49 -0.42 0.91 16 38 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.42 3.10 8.89 -40.82 -0.36 2.74 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -32.03 338.68 -8.22 -40.24 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.59 Total: 2.30 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.67 Total: -10.61 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.07 Total: -43.57 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.11 Total: -9.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.03 -8.22 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286107076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.280 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds