Wall clock time and date at job start Tue Mar 31 2020 06:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 5 5 C 1.46908 * 110.99837 * 84.99962 * 4 2 1 6 6 C 1.53000 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46831 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00065 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47607 * 119.99437 * 11 9 7 14 14 H 1.48501 * 109.46676 * 239.99816 * 11 9 7 15 15 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 16 16 C 1.38280 * 119.86701 * 80.00187 * 15 2 1 17 17 C 1.38283 * 120.19769 * 179.97438 * 16 15 2 18 18 C 1.38502 * 119.81636 * 359.97438 * 17 16 15 19 19 C 1.39398 * 119.98302 * 0.02562 * 18 17 16 20 20 C 1.38312 * 119.86995 * 259.72339 * 15 2 1 21 21 O 1.35989 * 119.46734 * 179.91728 * 19 18 17 22 22 C 1.43000 * 116.71183 * 327.20340 * 21 19 18 23 23 C 1.50764 * 109.62977 * 46.39587 * 22 21 19 24 24 O 1.21302 * 120.12850 * 148.69816 * 23 22 21 25 25 N 1.35079 * 119.73470 * 328.67878 * 23 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.00898 * 111.00604 * 208.95432 * 4 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 5 4 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 5 4 2 32 32 H 1.09000 * 109.47419 * 299.99657 * 6 5 4 33 33 H 1.09002 * 109.47282 * 60.00347 * 6 5 4 34 34 H 0.96994 * 119.99672 * 180.02562 * 10 9 7 35 35 H 1.08001 * 119.90051 * 359.97044 * 16 15 2 36 36 H 1.08000 * 120.09430 * 179.97438 * 17 16 15 37 37 H 1.07998 * 120.06277 * 0.02562 * 20 15 2 38 38 H 1.09002 * 109.44297 * 166.44600 * 22 21 19 39 39 H 1.08994 * 109.44472 * 286.38397 * 22 21 19 40 40 H 0.97004 * 120.50538 * 181.70098 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3468 6 6 2.5952 -0.5332 -3.5744 7 6 2.6602 0.4057 -4.7514 8 1 2.3650 1.4380 -4.6356 9 6 3.0956 -0.0536 -5.9764 10 7 3.4547 -1.3109 -6.1175 11 14 3.1769 1.1104 -7.4351 12 1 2.7225 2.4609 -7.0168 13 1 4.5753 1.1891 -7.9284 14 1 2.2969 0.6065 -8.5199 15 6 2.0323 -0.7104 1.2306 16 6 2.0656 -2.0924 1.2625 17 6 2.5257 -2.7512 2.3879 18 6 2.9546 -2.0229 3.4851 19 6 2.9211 -0.6297 3.4528 20 6 2.4637 0.0227 2.3213 21 8 3.3431 0.0749 4.5367 22 6 3.1180 -0.5198 5.8175 23 6 3.5363 -1.9679 5.7841 24 8 3.9699 -2.4997 6.7844 25 7 3.4258 -2.6708 4.6359 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 3.5905 -0.9272 -3.3690 33 1 1.9185 -1.3566 -3.8029 34 1 3.7613 -1.6338 -6.9792 35 1 1.7311 -2.6589 0.4060 36 1 2.5506 -3.8307 2.4112 37 1 2.4401 1.1020 2.2913 38 1 3.7018 0.0092 6.5708 39 1 2.0590 -0.4542 6.0669 40 1 3.6685 -3.6096 4.6079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286107076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:42 Heat of formation + Delta-G solvation = -73.733840 kcal Electronic energy + Delta-G solvation = -22114.436289 eV Core-core repulsion = 18699.968557 eV Total energy + Delta-G solvation = -3414.467732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.48203 -40.25772 -39.09153 -37.64425 -36.19505 -35.04828 -32.89404 -31.71747 -30.30654 -29.44359 -28.61358 -26.19340 -24.94363 -24.05462 -22.36935 -22.13287 -20.61745 -19.61813 -18.93494 -18.46529 -17.92755 -17.26257 -16.79818 -16.42712 -16.28802 -16.20584 -15.63234 -15.45022 -15.18019 -14.88489 -14.49490 -14.39330 -14.17846 -13.81995 -13.65511 -13.33888 -12.90395 -12.89831 -12.73163 -12.62225 -12.36085 -12.24704 -12.10201 -11.67023 -11.61951 -11.34138 -11.22123 -11.17013 -10.54222 -9.68885 -9.26397 -8.95257 -8.18125 -6.28734 -0.03500 0.26472 1.16879 1.42052 1.42476 1.55443 1.67866 2.22853 2.42353 2.63498 2.92355 3.15777 3.38170 3.60754 3.73080 3.99525 4.15007 4.16896 4.24390 4.40372 4.49537 4.56943 4.60769 4.71092 4.76882 4.93499 4.97366 5.05238 5.12992 5.17734 5.42181 5.43720 5.47738 5.54403 5.61995 5.73246 5.74536 5.83988 6.18372 6.22916 6.33337 6.57860 6.65509 6.89408 7.40481 8.94068 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033936 B = 0.002627 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.884780 B =10654.531925 C =10843.010190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.124 3.876 3 H 0.052 0.948 4 N -0.685 5.685 5 C 0.085 3.915 6 C 0.032 3.968 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.279 1.279 15 C -0.075 4.075 16 C -0.093 4.093 17 C -0.114 4.114 18 C 0.082 3.918 19 C 0.067 3.933 20 C -0.104 4.104 21 O -0.311 6.311 22 C 0.051 3.949 23 C 0.488 3.512 24 O -0.551 6.551 25 N -0.653 5.653 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.339 0.661 30 H 0.061 0.939 31 H 0.018 0.982 32 H -0.010 1.010 33 H -0.003 1.003 34 H 0.263 0.737 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.123 0.877 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 0.798 23.037 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.014 3.986 3 H 0.070 0.930 4 N -0.317 5.317 5 C -0.044 4.044 6 C -0.006 4.006 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.789 3.211 12 H -0.185 1.185 13 H -0.205 1.205 14 H -0.204 1.204 15 C -0.076 4.076 16 C -0.112 4.112 17 C -0.134 4.134 18 C -0.014 4.014 19 C 0.021 3.979 20 C -0.123 4.123 21 O -0.226 6.226 22 C -0.027 4.027 23 C 0.277 3.723 24 O -0.429 6.429 25 N -0.300 5.300 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.009 0.991 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.183 0.817 39 H 0.141 0.859 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -4.416 0.512 23.374 23.793 hybrid contribution 1.104 0.037 -0.778 1.351 sum -3.312 0.549 22.596 22.844 Atomic orbital electron populations 1.21750 0.92845 1.02516 1.01674 1.20470 0.96692 0.95220 0.86191 0.93015 1.60674 1.33438 1.33557 1.04011 1.21813 0.99286 0.93174 0.90119 1.18916 0.94402 0.95083 0.92154 1.21660 1.43660 0.97000 0.95677 0.92171 1.25949 0.94930 0.96775 1.02110 1.70108 1.45441 1.16322 1.25317 0.85410 0.77781 0.79202 0.78710 1.18548 1.20505 1.20436 1.19763 0.99124 0.94053 0.94703 1.21044 0.98421 0.93726 0.98056 1.20863 0.99966 1.01100 0.91466 1.18104 1.03151 0.90944 0.89168 1.18583 1.01605 0.88021 0.89695 1.20461 0.99313 1.01193 0.91377 1.86244 1.78089 1.45415 1.12839 1.23430 1.06233 0.87932 0.85081 1.22018 0.77059 0.91017 0.82250 1.90803 1.45384 1.72555 1.34164 1.43712 1.63460 1.14934 1.07885 0.92134 0.93210 0.90799 0.84279 0.92037 0.96396 0.99149 0.98503 0.92821 0.84125 0.82596 0.83490 0.81682 0.85915 0.73754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.39 71.98 0.68 -2.29 16 2 C 0.12 3.09 2.81 44.17 0.12 3.21 16 3 H 0.05 1.30 7.65 -2.39 -0.02 1.28 16 4 N -0.69 -22.08 5.68 -495.44 -2.82 -24.89 16 5 C 0.08 3.39 5.42 86.30 0.47 3.85 16 6 C 0.03 1.66 5.23 29.85 0.16 1.81 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.00 0.01 5.46 84.65 0.46 0.47 16 10 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 11 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 12 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 15 C -0.08 -1.61 4.72 -19.83 -0.09 -1.70 16 16 C -0.09 -1.88 8.99 22.29 0.20 -1.68 16 17 C -0.11 -1.92 9.95 22.34 0.22 -1.69 16 18 C 0.08 1.48 6.54 38.14 0.25 1.73 16 19 C 0.07 1.32 6.44 22.59 0.15 1.46 16 20 C -0.10 -2.06 9.62 22.32 0.21 -1.85 16 21 O -0.31 -5.65 10.45 -93.43 -0.98 -6.63 16 22 C 0.05 0.66 7.17 71.26 0.51 1.17 16 23 C 0.49 9.08 7.94 87.63 0.70 9.77 16 24 O -0.55 -13.74 17.95 -3.10 -0.06 -13.80 16 25 N -0.65 -10.90 5.47 -302.69 -1.66 -12.56 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.25 7.45 -2.39 -0.02 1.23 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.34 10.90 7.99 -89.70 -0.72 10.18 16 30 H 0.06 2.43 7.44 -2.39 -0.02 2.42 16 31 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.14 2.98 7.70 -2.91 -0.02 2.96 16 36 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.15 2.56 8.03 -2.91 -0.02 2.54 16 38 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 5.69 8.89 -92.71 -0.82 4.87 16 Total: -1.00 -68.89 338.68 0.60 -68.29 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.47 Total: 15.71 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 4.27 Total: -15.93 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -4.19 Total: -93.53 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.03 Total: -20.42 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.89 0.60 -68.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286107076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.444 kcal (2) G-P(sol) polarization free energy of solvation -68.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds