Wall clock time and date at job start Tue Mar 31 2020 06:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46637 * 2 1 4 4 N 1.46900 * 109.47073 * 119.99707 * 2 1 3 5 5 C 1.46894 * 111.00559 * 275.00312 * 4 2 1 6 6 C 1.52997 * 109.47515 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 C 1.50691 * 109.47160 * 240.00067 * 2 1 3 16 16 C 1.38284 * 119.87330 * 279.72341 * 15 2 1 17 17 C 1.38284 * 120.20060 * 179.74514 * 16 15 2 18 18 C 1.38501 * 119.81532 * 0.50382 * 17 16 15 19 19 C 1.39398 * 119.98757 * 359.78324 * 18 17 16 20 20 C 1.38319 * 119.86971 * 99.99921 * 15 2 1 21 21 O 1.35983 * 119.46488 * 179.91047 * 19 18 17 22 22 C 1.42997 * 116.71943 * 327.23126 * 21 19 18 23 23 C 1.50754 * 109.63936 * 46.38189 * 22 21 19 24 24 O 1.21292 * 120.13406 * 148.68794 * 23 22 21 25 25 N 1.35089 * 119.72829 * 328.67255 * 23 22 21 26 26 H 1.08994 * 109.47007 * 299.99951 * 1 2 3 27 27 H 1.08999 * 109.46772 * 60.00023 * 1 2 3 28 28 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.00899 * 110.99900 * 151.04363 * 4 2 1 30 30 H 1.09002 * 109.47104 * 59.99767 * 5 4 2 31 31 H 1.08998 * 109.46828 * 300.00600 * 5 4 2 32 32 H 1.09002 * 109.47153 * 59.99762 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99953 * 6 5 4 34 34 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 35 35 H 1.07997 * 119.89337 * 0.02562 * 16 15 2 36 36 H 1.08003 * 120.09033 * 180.27005 * 17 16 15 37 37 H 1.07994 * 120.06708 * 0.02562 * 20 15 2 38 38 H 1.08999 * 109.43907 * 166.43686 * 22 21 19 39 39 H 1.09003 * 109.44476 * 286.36551 * 22 21 19 40 40 H 0.97003 * 120.50559 * 181.68288 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5329 3.5742 7 6 2.6612 0.4060 4.7512 8 1 2.3652 1.4382 4.6356 9 6 3.0975 -0.0530 5.9759 10 7 3.1537 0.7663 7.0032 11 14 3.6088 -1.8385 6.1761 12 1 5.0592 -1.9733 5.8875 13 1 3.3383 -2.2776 7.5686 14 1 2.8353 -2.6837 5.2314 15 6 2.0324 -0.7103 -1.2304 16 6 2.0710 -2.0923 -1.2603 17 6 2.5258 -2.7512 -2.3878 18 6 2.9532 -2.0229 -3.4856 19 6 2.9199 -0.6297 -3.4533 20 6 2.4584 0.0226 -2.3233 21 8 3.3438 0.0748 -4.5365 22 6 4.4045 -0.5013 -5.3032 23 6 4.1152 -1.9597 -5.5526 24 8 4.5039 -2.4921 -6.5707 25 7 3.4217 -2.6711 -4.6373 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9173 -1.1205 1.0288 30 1 1.0871 0.6163 2.5525 31 1 2.7588 1.0462 2.1182 32 1 3.5917 -0.9262 3.3683 33 1 1.9202 -1.3567 3.8030 34 1 3.4610 0.4435 7.8647 35 1 1.7408 -2.6587 -0.4021 36 1 2.5511 -3.8307 -2.4109 37 1 2.4314 1.1018 -2.2948 38 1 4.4876 0.0204 -6.2566 39 1 5.3417 -0.4064 -4.7548 40 1 3.2503 -3.6159 -4.7748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286107080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:45 Heat of formation + Delta-G solvation = -48.141348 kcal Electronic energy + Delta-G solvation = -22191.381727 eV Core-core repulsion = 18778.023768 eV Total energy + Delta-G solvation = -3413.357959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76436 -39.44752 -38.27336 -36.68685 -35.18420 -33.20897 -31.57754 -30.99149 -29.40716 -28.38323 -27.90638 -24.60040 -24.05290 -22.97590 -21.30775 -20.43075 -19.86441 -18.83670 -18.20401 -17.21483 -16.79825 -16.41733 -15.79045 -15.56475 -15.27743 -14.81638 -14.65244 -14.30746 -14.18827 -13.72764 -13.47777 -13.41491 -13.00951 -12.85879 -12.51827 -12.19508 -11.87249 -11.71365 -11.56787 -11.38092 -11.17279 -10.90450 -10.81030 -10.47662 -10.07506 -9.88762 -9.76829 -9.24836 -8.96009 -8.55538 -8.19478 -8.04598 -6.06128 -4.04655 0.72706 0.99129 1.89422 2.35380 2.89338 3.30403 3.38250 3.39888 3.43198 3.58852 4.28899 4.44458 4.46199 4.49618 4.60700 4.72656 4.87051 4.99657 5.18671 5.28507 5.39899 5.46392 5.52056 5.68416 5.78457 5.90691 6.02381 6.11354 6.15346 6.21120 6.29428 6.32424 6.44644 6.45578 6.75211 6.93737 7.09964 7.34065 7.34962 7.55635 7.70682 7.85796 8.51043 8.98050 9.56177 11.07221 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.002904 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.984047 B = 9639.007641 C = 9978.685589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.122 3.878 3 H 0.053 0.947 4 N -0.687 5.687 5 C 0.073 3.927 6 C -0.009 4.009 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.067 3.933 10 N -0.904 5.904 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.263 1.263 15 C -0.070 4.070 16 C -0.088 4.088 17 C -0.121 4.121 18 C 0.083 3.917 19 C 0.074 3.926 20 C -0.101 4.101 21 O -0.302 6.302 22 C 0.051 3.949 23 C 0.491 3.509 24 O -0.517 6.517 25 N -0.658 5.658 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.337 0.663 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.008 0.992 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -4.944 -23.658 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.013 3.987 3 H 0.071 0.929 4 N -0.319 5.319 5 C -0.055 4.055 6 C -0.047 4.047 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.543 5.543 11 Si 0.709 3.291 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.187 1.187 15 C -0.071 4.071 16 C -0.107 4.107 17 C -0.142 4.142 18 C -0.012 4.012 19 C 0.028 3.972 20 C -0.120 4.120 21 O -0.217 6.217 22 C -0.028 4.028 23 C 0.278 3.722 24 O -0.392 6.392 25 N -0.305 5.305 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.118 0.882 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.292 -5.101 -23.962 24.533 hybrid contribution 1.177 -0.994 -0.023 1.540 sum -0.115 -6.094 -23.985 24.748 Atomic orbital electron populations 1.21778 0.93518 1.02532 1.01392 1.20444 0.96197 0.95388 0.86721 0.92940 1.60768 1.33181 1.34181 1.03752 1.22020 1.00343 0.93338 0.89780 1.19541 0.95579 0.96741 0.92854 1.21067 1.44321 0.97713 0.92915 0.91110 1.25013 0.95046 0.97593 0.95797 1.69915 1.47694 1.35383 1.01274 0.86748 0.79200 0.85837 0.77338 1.20432 1.21468 1.18736 1.19938 0.98186 0.93811 0.95176 1.21016 0.98115 0.93886 0.97691 1.20674 1.01884 0.99937 0.91697 1.18035 1.03535 0.91004 0.88596 1.18484 1.02355 0.87651 0.88683 1.20432 1.01302 1.00736 0.89547 1.86250 1.51246 1.46405 1.37784 1.23177 0.91338 0.89422 0.98821 1.21579 0.77441 0.90346 0.82850 1.90814 1.50462 1.72140 1.25785 1.43718 1.53582 1.13722 1.19496 0.91859 0.92892 0.91923 0.84468 0.91495 0.95862 0.97342 0.95629 0.92719 0.83713 0.84894 0.84327 0.83757 0.88231 0.74555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.39 37.16 0.35 -1.21 16 2 C 0.12 1.50 2.81 -68.87 -0.19 1.31 16 3 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 4 N -0.69 -10.28 5.68 -107.96 -0.61 -10.90 16 5 C 0.07 1.38 5.42 -3.83 -0.02 1.36 16 6 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 11 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 15 C -0.07 -0.75 4.72 -104.58 -0.49 -1.24 16 16 C -0.09 -0.87 8.99 -39.55 -0.36 -1.23 16 17 C -0.12 -1.06 9.95 -39.47 -0.39 -1.45 16 18 C 0.08 0.79 6.54 -83.49 -0.55 0.24 16 19 C 0.07 0.76 6.44 -39.09 -0.25 0.51 16 20 C -0.10 -1.03 9.62 -39.49 -0.38 -1.41 16 21 O -0.30 -2.95 10.45 -19.69 -0.21 -3.16 16 22 C 0.05 0.38 7.17 36.03 0.26 0.64 16 23 C 0.49 4.81 7.94 -10.82 -0.09 4.73 16 24 O -0.52 -6.55 17.95 5.55 0.10 -6.46 16 25 N -0.66 -5.75 5.47 -9.67 -0.05 -5.80 16 26 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.34 4.85 7.98 -39.29 -0.31 4.54 16 30 H 0.07 1.28 7.44 -51.93 -0.39 0.90 16 31 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 32 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 33 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.15 1.44 7.69 -52.49 -0.40 1.04 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 37 H 0.14 1.27 8.03 -52.49 -0.42 0.85 16 38 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.42 2.89 8.89 -40.82 -0.36 2.53 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -32.50 335.05 -7.84 -40.34 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.56 Total: 2.20 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.66 Total: -11.20 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.11 Total: -43.57 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.11 Total: -9.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.50 -7.84 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286107080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.805 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds