Wall clock time and date at job start Tue Mar 31 2020 06:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46637 * 2 1 4 4 N 1.46900 * 109.47073 * 119.99707 * 2 1 3 5 5 C 1.46894 * 111.00559 * 275.00312 * 4 2 1 6 6 C 1.52997 * 109.47515 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99594 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99875 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47061 * 90.00257 * 11 9 7 13 13 H 1.48497 * 109.46906 * 209.99430 * 11 9 7 14 14 H 1.48498 * 109.47403 * 329.99876 * 11 9 7 15 15 C 1.50691 * 109.47160 * 240.00067 * 2 1 3 16 16 C 1.38284 * 119.87330 * 279.72341 * 15 2 1 17 17 C 1.38284 * 120.20060 * 179.74514 * 16 15 2 18 18 C 1.38501 * 119.81532 * 0.50382 * 17 16 15 19 19 C 1.39398 * 119.98757 * 359.78324 * 18 17 16 20 20 C 1.38319 * 119.86971 * 99.99921 * 15 2 1 21 21 O 1.35983 * 119.46488 * 179.91047 * 19 18 17 22 22 C 1.42997 * 116.71943 * 327.23126 * 21 19 18 23 23 C 1.50754 * 109.63936 * 46.38189 * 22 21 19 24 24 O 1.21292 * 120.13406 * 148.68794 * 23 22 21 25 25 N 1.35089 * 119.72829 * 328.67255 * 23 22 21 26 26 H 1.08994 * 109.47007 * 299.99951 * 1 2 3 27 27 H 1.08999 * 109.46772 * 60.00023 * 1 2 3 28 28 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.00899 * 110.99900 * 151.04363 * 4 2 1 30 30 H 1.09002 * 109.47104 * 59.99767 * 5 4 2 31 31 H 1.08998 * 109.46828 * 300.00600 * 5 4 2 32 32 H 1.09002 * 109.47153 * 59.99762 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99953 * 6 5 4 34 34 H 0.97002 * 119.99739 * 180.02562 * 10 9 7 35 35 H 1.07997 * 119.89337 * 0.02562 * 16 15 2 36 36 H 1.08003 * 120.09033 * 180.27005 * 17 16 15 37 37 H 1.07994 * 120.06708 * 0.02562 * 20 15 2 38 38 H 1.08999 * 109.43907 * 166.43686 * 22 21 19 39 39 H 1.09003 * 109.44476 * 286.36551 * 22 21 19 40 40 H 0.97003 * 120.50559 * 181.68288 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5329 3.5742 7 6 2.6612 0.4060 4.7512 8 1 2.3652 1.4382 4.6356 9 6 3.0975 -0.0530 5.9759 10 7 3.1537 0.7663 7.0032 11 14 3.6088 -1.8385 6.1761 12 1 5.0592 -1.9733 5.8875 13 1 3.3383 -2.2776 7.5686 14 1 2.8353 -2.6837 5.2314 15 6 2.0324 -0.7103 -1.2304 16 6 2.0710 -2.0923 -1.2603 17 6 2.5258 -2.7512 -2.3878 18 6 2.9532 -2.0229 -3.4856 19 6 2.9199 -0.6297 -3.4533 20 6 2.4584 0.0226 -2.3233 21 8 3.3438 0.0748 -4.5365 22 6 4.4045 -0.5013 -5.3032 23 6 4.1152 -1.9597 -5.5526 24 8 4.5039 -2.4921 -6.5707 25 7 3.4217 -2.6711 -4.6373 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.9173 -1.1205 1.0288 30 1 1.0871 0.6163 2.5525 31 1 2.7588 1.0462 2.1182 32 1 3.5917 -0.9262 3.3683 33 1 1.9202 -1.3567 3.8030 34 1 3.4610 0.4435 7.8647 35 1 1.7408 -2.6587 -0.4021 36 1 2.5511 -3.8307 -2.4109 37 1 2.4314 1.1018 -2.2948 38 1 4.4876 0.0204 -6.2566 39 1 5.3417 -0.4064 -4.7548 40 1 3.2503 -3.6159 -4.7748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286107080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:44 Heat of formation + Delta-G solvation = -71.471178 kcal Electronic energy + Delta-G solvation = -22192.393384 eV Core-core repulsion = 18778.023768 eV Total energy + Delta-G solvation = -3414.369616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.48523 -40.26648 -39.10503 -37.67011 -36.20757 -35.00721 -33.11636 -31.72588 -30.54531 -29.58678 -28.62198 -26.12424 -24.92503 -23.96610 -22.22371 -22.12495 -20.62922 -19.62502 -18.96368 -18.87099 -17.93850 -17.28810 -16.77472 -16.36566 -16.26227 -16.18891 -15.64603 -15.55126 -14.93046 -14.85842 -14.82977 -14.57576 -14.24170 -13.98060 -13.67910 -13.42044 -12.99197 -12.90689 -12.71921 -12.59736 -12.30415 -12.08139 -11.78890 -11.72663 -11.63911 -11.44679 -11.37284 -11.20949 -10.73906 -9.68927 -9.30647 -8.95125 -8.27001 -6.31344 -0.03461 0.26440 1.15948 1.39478 1.42144 1.54885 1.67970 2.21422 2.39680 2.65324 2.91398 3.09103 3.31796 3.60093 3.72650 3.98289 4.15379 4.16549 4.24180 4.39783 4.45661 4.53635 4.57666 4.68156 4.76205 4.89602 4.97149 5.01082 5.05814 5.17145 5.34420 5.42767 5.43172 5.52351 5.56394 5.62404 5.68491 5.73958 6.18710 6.23185 6.29621 6.57676 6.65394 6.78206 7.33644 8.89743 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.002904 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.984047 B = 9639.007641 C = 9978.685589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.124 3.876 3 H 0.050 0.950 4 N -0.682 5.682 5 C 0.087 3.913 6 C -0.004 4.004 7 C -0.532 4.532 8 H 0.031 0.969 9 C 0.003 3.997 10 N -0.953 5.953 11 Si 0.954 3.046 12 H -0.267 1.267 13 H -0.287 1.287 14 H -0.243 1.243 15 C -0.075 4.075 16 C -0.092 4.092 17 C -0.113 4.113 18 C 0.081 3.919 19 C 0.065 3.935 20 C -0.105 4.105 21 O -0.311 6.311 22 C 0.049 3.951 23 C 0.489 3.511 24 O -0.551 6.551 25 N -0.652 5.652 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.343 0.657 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.018 0.982 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.166 0.834 39 H 0.119 0.881 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 -6.854 -25.200 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 H 0.068 0.932 4 N -0.313 5.313 5 C -0.041 4.041 6 C -0.042 4.042 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.194 4.194 10 N -0.594 5.594 11 Si 0.778 3.222 12 H -0.192 1.192 13 H -0.213 1.213 14 H -0.167 1.167 15 C -0.076 4.076 16 C -0.110 4.110 17 C -0.133 4.133 18 C -0.014 4.014 19 C 0.019 3.981 20 C -0.124 4.124 21 O -0.226 6.226 22 C -0.028 4.028 23 C 0.277 3.723 24 O -0.429 6.429 25 N -0.300 5.300 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.183 0.817 39 H 0.137 0.863 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.940 -7.015 -25.522 26.485 hybrid contribution 1.031 -0.313 0.411 1.153 sum 0.091 -7.328 -25.112 26.159 Atomic orbital electron populations 1.21757 0.93011 1.02656 1.01521 1.20431 0.96549 0.95242 0.86290 0.93193 1.60660 1.33570 1.33329 1.03783 1.21661 0.99383 0.93178 0.89926 1.19430 0.96203 0.95873 0.92663 1.21444 1.43593 0.97021 0.95037 0.95056 1.26027 0.95139 1.02852 0.95350 1.70075 1.49294 1.37973 1.02046 0.85595 0.79407 0.79613 0.77628 1.19236 1.21324 1.16656 1.19741 0.99147 0.94154 0.94586 1.21063 0.98265 0.93524 0.98191 1.20881 1.00515 1.01156 0.90743 1.18125 1.03465 0.90894 0.88911 1.18603 1.02511 0.88100 0.88863 1.20472 1.01289 1.01123 0.89546 1.86239 1.51970 1.46690 1.37699 1.23416 0.91420 0.88116 0.99844 1.21966 0.76828 0.91168 0.82318 1.90801 1.51972 1.72985 1.27091 1.43700 1.53002 1.14169 1.19079 0.93330 0.91175 0.91771 0.83798 0.92343 0.96554 0.96360 0.95651 0.92542 0.83610 0.82428 0.83761 0.81655 0.86331 0.73672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.39 71.98 0.68 -2.20 16 2 C 0.12 2.87 2.81 44.17 0.12 2.99 16 3 H 0.05 1.20 7.66 -2.39 -0.02 1.18 16 4 N -0.68 -19.33 5.68 -495.48 -2.81 -22.14 16 5 C 0.09 3.25 5.42 86.30 0.47 3.72 16 6 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 7 C -0.53 -30.32 9.66 25.60 0.25 -30.08 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.00 0.17 5.47 84.66 0.46 0.63 16 10 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 11 Si 0.95 43.72 27.47 68.60 1.88 45.60 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 15 C -0.07 -1.46 4.72 -19.84 -0.09 -1.55 16 16 C -0.09 -1.59 8.99 22.29 0.20 -1.39 16 17 C -0.11 -1.64 9.95 22.34 0.22 -1.41 16 18 C 0.08 1.34 6.54 38.14 0.25 1.59 16 19 C 0.07 1.21 6.44 22.59 0.15 1.35 16 20 C -0.10 -1.95 9.62 22.33 0.21 -1.74 16 21 O -0.31 -5.46 10.45 -93.36 -0.98 -6.44 16 22 C 0.05 0.64 7.17 71.25 0.51 1.15 16 23 C 0.49 8.77 7.94 87.62 0.70 9.46 16 24 O -0.55 -13.37 17.95 -3.07 -0.06 -13.43 16 25 N -0.65 -10.05 5.47 -302.70 -1.66 -11.71 16 26 H 0.05 1.19 7.45 -2.39 -0.02 1.17 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.34 9.13 7.98 -89.70 -0.72 8.42 16 30 H 0.06 2.26 7.44 -2.39 -0.02 2.24 16 31 H 0.02 0.62 8.05 -2.39 -0.02 0.60 16 32 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 33 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.15 2.52 7.69 -2.91 -0.02 2.49 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.14 2.44 8.03 -2.91 -0.02 2.41 16 38 H 0.17 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 5.02 8.89 -92.71 -0.82 4.19 16 Total: -1.00 -70.50 335.05 0.41 -70.09 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -0.52 Total: 14.86 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.25 Total: -17.50 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -4.17 Total: -93.18 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.03 Total: -19.86 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -70.50 0.41 -70.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286107080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.383 kcal (2) G-P(sol) polarization free energy of solvation -70.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds