Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.66395 * 2 1 4 4 O 1.43762 * 110.74200 * 236.58746 * 2 1 3 5 5 C 1.36133 * 109.28770 * 269.21966 * 4 2 1 6 6 C 1.39290 * 129.87501 * 161.45730 * 5 4 2 7 7 C 1.37936 * 120.24055 * 179.54878 * 6 5 4 8 8 C 1.38279 * 120.35034 * 0.06604 * 7 6 5 9 9 C 1.38348 * 119.76910 * 0.15446 * 8 7 6 10 10 C 1.37682 * 119.99844 * 359.93352 * 9 8 7 11 11 C 1.51645 * 132.22666 * 179.59264 * 10 9 8 12 12 H 1.09002 * 110.94318 * 313.97468 * 11 10 9 13 13 N 1.46497 * 110.94067 * 77.63438 * 11 10 9 14 14 C 1.34782 * 119.99884 * 270.57346 * 13 11 10 15 15 O 1.21587 * 119.99795 * 0.02562 * 14 13 11 16 16 N 1.34769 * 120.00245 * 180.02562 * 14 13 11 17 17 C 1.46503 * 120.00263 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47281 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47010 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99926 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00118 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99614 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00288 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46804 * 60.00082 * 23 21 19 25 25 H 1.48501 * 109.47197 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47190 * 299.99943 * 23 21 19 27 27 H 1.08998 * 109.47173 * 296.78560 * 1 2 3 28 28 H 1.08998 * 109.47346 * 56.78909 * 1 2 3 29 29 H 1.08997 * 109.47598 * 176.78974 * 1 2 3 30 30 H 1.08003 * 119.88142 * 359.57535 * 6 5 4 31 31 H 1.08002 * 119.81607 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.11311 * 180.12919 * 8 7 6 33 33 H 1.07998 * 120.00883 * 179.97438 * 9 8 7 34 34 H 0.96995 * 120.00746 * 90.58225 * 13 11 10 35 35 H 0.97004 * 120.00347 * 0.02562 * 16 14 13 36 36 H 1.08995 * 109.46850 * 300.00161 * 17 16 14 37 37 H 1.09002 * 109.47059 * 60.00037 * 17 16 14 38 38 H 1.08996 * 109.46994 * 300.00155 * 18 17 16 39 39 H 1.09002 * 109.46860 * 60.00140 * 18 17 16 40 40 H 0.97003 * 119.99746 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 8 2.0391 -0.7403 -1.1222 5 6 2.2148 -2.0409 -0.7606 6 6 2.3466 -3.1784 -1.5537 7 6 2.5277 -4.4150 -0.9701 8 6 2.5788 -4.5374 0.4063 9 6 2.4441 -3.4131 1.2013 10 6 2.2614 -2.1778 0.6214 11 6 2.0780 -0.7925 1.2104 12 1 1.3546 -0.8084 2.0256 13 7 3.3585 -0.2414 1.6608 14 6 3.7846 -0.4684 2.9191 15 8 3.1065 -1.1309 3.6804 16 7 4.9623 0.0391 3.3336 17 6 5.4257 -0.2081 4.7013 18 6 6.7795 0.4730 4.9120 19 6 7.2565 0.2182 6.3186 20 1 6.6541 -0.3703 6.9948 21 6 8.4614 0.7372 6.7426 22 7 9.1946 1.4543 5.9193 23 14 9.0523 0.4220 8.4864 24 1 9.1950 -1.0401 8.7039 25 1 10.3663 1.0829 8.6909 26 1 8.0657 0.9719 9.4504 27 1 -0.3633 0.4631 0.9174 28 1 -0.3634 0.5629 -0.8598 29 1 -0.3634 -1.0260 -0.0575 30 1 2.3073 -3.0917 -2.6295 31 1 2.6296 -5.2924 -1.5917 32 1 2.7228 -5.5072 0.8591 33 1 2.4829 -3.5043 2.2767 34 1 3.8996 0.2870 1.0535 35 1 5.5032 0.5680 2.7265 36 1 4.7015 0.1955 5.4088 37 1 5.5306 -1.2812 4.8610 38 1 7.5035 0.0690 4.2044 39 1 6.6751 1.5462 4.7521 40 1 10.0425 1.8191 6.2175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288444516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -42.654648 kcal Electronic energy + Delta-G solvation = -22460.814108 eV Core-core repulsion = 19047.694070 eV Total energy + Delta-G solvation = -3413.120037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.64680 -39.35404 -37.67450 -35.22101 -34.44391 -32.89390 -31.96857 -30.95076 -30.11189 -29.33721 -26.43651 -24.53375 -22.92773 -21.98938 -21.79481 -20.97324 -20.50957 -18.19869 -17.40808 -16.97979 -16.45241 -16.10965 -15.89999 -15.40883 -15.04698 -14.51572 -14.30207 -14.02259 -13.76128 -13.61180 -13.52373 -13.12452 -12.90306 -12.64507 -12.31961 -12.27942 -11.97772 -11.39702 -11.31217 -11.19869 -11.05787 -10.99037 -10.65083 -10.32037 -10.01431 -9.58012 -9.29731 -9.17128 -9.03012 -8.49595 -8.35758 -8.28588 -6.09019 -4.11873 1.10259 1.26137 2.89326 2.98803 3.31547 3.35321 3.38797 3.48634 3.67617 4.12962 4.34235 4.38897 4.56038 4.64630 4.78907 4.85802 4.92997 5.04088 5.22936 5.28010 5.32178 5.41134 5.54318 5.57494 5.73951 5.89601 6.17126 6.26537 6.31255 6.38540 6.40047 6.45222 6.47040 6.76304 6.96946 7.01980 7.16909 7.55853 7.62984 7.89815 8.24724 8.38907 8.90785 8.96044 9.52841 11.02620 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002999 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.623476 B = 9334.401599 C = 9804.061504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 H 0.123 0.877 4 O -0.299 6.299 5 C 0.110 3.890 6 C -0.146 4.146 7 C -0.082 4.082 8 C -0.153 4.153 9 C -0.047 4.047 10 C -0.184 4.184 11 C 0.182 3.818 12 H 0.114 0.886 13 N -0.741 5.741 14 C 0.702 3.298 15 O -0.595 6.595 16 N -0.737 5.737 17 C 0.140 3.860 18 C 0.013 3.987 19 C -0.522 4.522 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.396 0.604 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.210 -5.582 -16.627 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 H 0.140 0.860 4 O -0.213 6.213 5 C 0.064 3.936 6 C -0.165 4.165 7 C -0.100 4.100 8 C -0.172 4.172 9 C -0.065 4.065 10 C -0.186 4.186 11 C 0.075 3.925 12 H 0.132 0.868 13 N -0.397 5.397 14 C 0.402 3.598 15 O -0.473 6.473 16 N -0.390 5.390 17 C 0.018 3.982 18 C -0.024 4.024 19 C -0.561 4.561 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.231 0.769 35 H 0.227 0.773 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.603 -5.953 -16.073 23.863 hybrid contribution 1.035 0.384 0.469 1.200 sum -15.567 -5.569 -15.604 22.734 Atomic orbital electron populations 1.22162 0.92957 1.03647 1.03602 1.23652 0.95421 0.96557 0.83018 0.85982 1.86892 1.80057 1.16808 1.37528 1.19593 0.96257 0.84939 0.92801 1.20218 1.07193 0.89498 0.99560 1.20887 0.97747 0.96362 0.95026 1.21100 1.03783 0.98660 0.93612 1.20512 0.94799 0.90456 1.00749 1.21092 1.07930 0.95936 0.93675 1.20773 0.86656 0.88236 0.96818 0.86819 1.45103 1.22834 1.58685 1.13093 1.16030 0.82134 0.80252 0.81427 1.90876 1.57209 1.44814 1.54448 1.45545 1.20169 1.56543 1.16714 1.21606 0.97828 1.00303 0.78482 1.19320 0.89467 0.95952 0.97688 1.21012 1.04653 1.33292 0.97101 0.92265 1.24995 0.96575 0.94936 0.97767 1.69949 1.13165 1.34738 1.35496 0.86564 0.77878 0.78566 0.84482 1.20095 1.21254 1.20095 0.90173 0.90836 0.91502 0.85640 0.85280 0.85486 0.85196 0.76933 0.77338 0.92725 0.92775 0.95982 0.95975 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 9.51 37.16 0.35 -0.88 16 2 C 0.07 0.65 3.93 -25.83 -0.10 0.55 16 3 H 0.12 0.92 8.08 -51.93 -0.42 0.50 16 4 O -0.30 -3.39 10.81 -20.16 -0.22 -3.61 16 5 C 0.11 1.32 6.92 -38.93 -0.27 1.05 16 6 C -0.15 -1.54 10.06 -39.30 -0.40 -1.94 16 7 C -0.08 -0.79 10.02 -39.68 -0.40 -1.19 16 8 C -0.15 -1.66 10.07 -39.53 -0.40 -2.06 16 9 C -0.05 -0.61 10.03 -39.74 -0.40 -1.01 16 10 C -0.18 -2.37 5.93 -104.09 -0.62 -2.98 16 11 C 0.18 2.18 2.98 -67.72 -0.20 1.98 16 12 H 0.11 1.46 7.41 -51.93 -0.38 1.08 16 13 N -0.74 -9.73 5.16 -58.47 -0.30 -10.03 16 14 C 0.70 12.19 8.57 -86.92 -0.74 11.45 16 15 O -0.59 -12.37 16.03 5.29 0.08 -12.28 16 16 N -0.74 -13.07 5.56 -65.22 -0.36 -13.44 16 17 C 0.14 3.02 5.61 -4.04 -0.02 3.00 16 18 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 19 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 23 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.40 4.28 8.64 -40.82 -0.35 3.93 16 35 H 0.39 6.06 8.49 -40.82 -0.35 5.71 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -32.78 342.81 -9.35 -42.14 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.69 Total: 6.24 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.75 Total: -5.11 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.07 Total: -48.94 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.13 Total: -15.89 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.78 -9.35 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288444516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.517 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds