Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.66395 * 2 1 4 4 O 1.43762 * 110.74200 * 236.58746 * 2 1 3 5 5 C 1.36133 * 109.28770 * 269.21966 * 4 2 1 6 6 C 1.39290 * 129.87501 * 161.45730 * 5 4 2 7 7 C 1.37936 * 120.24055 * 179.54878 * 6 5 4 8 8 C 1.38279 * 120.35034 * 0.06604 * 7 6 5 9 9 C 1.38348 * 119.76910 * 0.15446 * 8 7 6 10 10 C 1.37682 * 119.99844 * 359.93352 * 9 8 7 11 11 C 1.51645 * 132.22666 * 179.59264 * 10 9 8 12 12 H 1.09002 * 110.94318 * 313.97468 * 11 10 9 13 13 N 1.46497 * 110.94067 * 77.63438 * 11 10 9 14 14 C 1.34782 * 119.99884 * 270.57346 * 13 11 10 15 15 O 1.21587 * 119.99795 * 0.02562 * 14 13 11 16 16 N 1.34769 * 120.00245 * 180.02562 * 14 13 11 17 17 C 1.46503 * 120.00263 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47281 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47010 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99926 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00118 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99614 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00288 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46804 * 60.00082 * 23 21 19 25 25 H 1.48501 * 109.47197 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47190 * 299.99943 * 23 21 19 27 27 H 1.08998 * 109.47173 * 296.78560 * 1 2 3 28 28 H 1.08998 * 109.47346 * 56.78909 * 1 2 3 29 29 H 1.08997 * 109.47598 * 176.78974 * 1 2 3 30 30 H 1.08003 * 119.88142 * 359.57535 * 6 5 4 31 31 H 1.08002 * 119.81607 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.11311 * 180.12919 * 8 7 6 33 33 H 1.07998 * 120.00883 * 179.97438 * 9 8 7 34 34 H 0.96995 * 120.00746 * 90.58225 * 13 11 10 35 35 H 0.97004 * 120.00347 * 0.02562 * 16 14 13 36 36 H 1.08995 * 109.46850 * 300.00161 * 17 16 14 37 37 H 1.09002 * 109.47059 * 60.00037 * 17 16 14 38 38 H 1.08996 * 109.46994 * 300.00155 * 18 17 16 39 39 H 1.09002 * 109.46860 * 60.00140 * 18 17 16 40 40 H 0.97003 * 119.99746 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 8 2.0391 -0.7403 -1.1222 5 6 2.2148 -2.0409 -0.7606 6 6 2.3466 -3.1784 -1.5537 7 6 2.5277 -4.4150 -0.9701 8 6 2.5788 -4.5374 0.4063 9 6 2.4441 -3.4131 1.2013 10 6 2.2614 -2.1778 0.6214 11 6 2.0780 -0.7925 1.2104 12 1 1.3546 -0.8084 2.0256 13 7 3.3585 -0.2414 1.6608 14 6 3.7846 -0.4684 2.9191 15 8 3.1065 -1.1309 3.6804 16 7 4.9623 0.0391 3.3336 17 6 5.4257 -0.2081 4.7013 18 6 6.7795 0.4730 4.9120 19 6 7.2565 0.2182 6.3186 20 1 6.6541 -0.3703 6.9948 21 6 8.4614 0.7372 6.7426 22 7 9.1946 1.4543 5.9193 23 14 9.0523 0.4220 8.4864 24 1 9.1950 -1.0401 8.7039 25 1 10.3663 1.0829 8.6909 26 1 8.0657 0.9719 9.4504 27 1 -0.3633 0.4631 0.9174 28 1 -0.3634 0.5629 -0.8598 29 1 -0.3634 -1.0260 -0.0575 30 1 2.3073 -3.0917 -2.6295 31 1 2.6296 -5.2924 -1.5917 32 1 2.7228 -5.5072 0.8591 33 1 2.4829 -3.5043 2.2767 34 1 3.8996 0.2870 1.0535 35 1 5.5032 0.5680 2.7265 36 1 4.7015 0.1955 5.4088 37 1 5.5306 -1.2812 4.8610 38 1 7.5035 0.0690 4.2044 39 1 6.6751 1.5462 4.7521 40 1 10.0425 1.8191 6.2175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288444516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -64.713054 kcal Electronic energy + Delta-G solvation = -22461.770632 eV Core-core repulsion = 19047.694070 eV Total energy + Delta-G solvation = -3414.076562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.54021 -40.74292 -38.50439 -36.76947 -35.78719 -34.83431 -33.00750 -31.80712 -31.31417 -30.76552 -27.53705 -26.31559 -23.75368 -23.20962 -22.78348 -22.50452 -21.83861 -19.53466 -18.46076 -18.40229 -17.78889 -17.27527 -16.84540 -16.54657 -16.41729 -16.37701 -15.54961 -15.18751 -15.09493 -14.88904 -14.50535 -14.28384 -14.18092 -13.72555 -13.43429 -13.23036 -13.04009 -12.94034 -12.81251 -12.53988 -12.24794 -12.19768 -12.08406 -11.90924 -11.69286 -11.52621 -11.25489 -10.60575 -10.42328 -9.96913 -9.81032 -9.21970 -8.24185 -6.34761 0.22841 0.38276 1.41822 1.44443 1.52101 1.67726 2.09483 2.17685 2.41003 2.76353 3.10638 3.23846 3.37149 3.46884 3.82414 3.96044 4.17407 4.19442 4.22056 4.43364 4.46258 4.50980 4.56207 4.63306 4.78504 4.83868 4.85324 5.05523 5.15060 5.28595 5.33727 5.35625 5.45061 5.49378 5.54036 5.58417 5.62719 5.77430 5.95213 6.16355 6.17835 6.78246 7.04637 7.34588 7.53293 8.87589 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025228 B = 0.002999 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.623476 B = 9334.401599 C = 9804.061504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.076 3.924 3 H 0.144 0.856 4 O -0.304 6.304 5 C 0.100 3.900 6 C -0.149 4.149 7 C -0.075 4.075 8 C -0.157 4.157 9 C -0.072 4.072 10 C -0.205 4.205 11 C 0.176 3.824 12 H 0.100 0.900 13 N -0.723 5.723 14 C 0.702 3.298 15 O -0.631 6.631 16 N -0.732 5.732 17 C 0.162 3.838 18 C 0.025 3.975 19 C -0.548 4.548 20 H 0.059 0.941 21 C 0.007 3.993 22 N -0.927 5.927 23 Si 0.965 3.035 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.268 1.268 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.410 0.590 35 H 0.406 0.594 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.007 0.993 39 H 0.009 0.991 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 -5.869 -17.837 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 H 0.162 0.838 4 O -0.218 6.218 5 C 0.055 3.945 6 C -0.167 4.167 7 C -0.093 4.093 8 C -0.175 4.175 9 C -0.091 4.091 10 C -0.207 4.207 11 C 0.070 3.930 12 H 0.118 0.882 13 N -0.379 5.379 14 C 0.402 3.598 15 O -0.512 6.512 16 N -0.387 5.387 17 C 0.038 3.962 18 C -0.013 4.013 19 C -0.587 4.587 20 H 0.078 0.922 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.790 3.210 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.193 1.193 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.165 0.835 31 H 0.181 0.819 32 H 0.162 0.838 33 H 0.125 0.875 34 H 0.247 0.753 35 H 0.241 0.759 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.028 0.972 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.058 -6.224 -17.341 25.108 hybrid contribution 1.135 0.437 0.767 1.437 sum -15.923 -5.787 -16.575 23.701 Atomic orbital electron populations 1.22162 0.91413 1.03475 1.04891 1.23815 0.96526 0.96729 0.80905 0.83848 1.86878 1.80277 1.16617 1.38077 1.19792 0.96604 0.85618 0.92502 1.20619 1.06139 0.89268 1.00710 1.21284 0.95939 0.97333 0.94695 1.21365 1.03157 0.98662 0.94332 1.20538 0.96757 0.91784 0.99978 1.21176 1.09068 0.95967 0.94504 1.20955 0.85546 0.88965 0.97544 0.88168 1.44941 1.23333 1.57969 1.11635 1.16097 0.81530 0.79745 0.82411 1.90854 1.58141 1.46325 1.55879 1.45236 1.20747 1.57065 1.15637 1.21077 0.95894 0.98904 0.80371 1.19118 0.90686 0.95202 0.96298 1.21442 1.05220 1.33533 0.98456 0.92231 1.25874 0.96653 0.94524 1.02091 1.70056 1.13594 1.35498 1.37485 0.85495 0.77534 0.78726 0.79282 1.19353 1.20578 1.19253 0.89167 0.89169 0.92468 0.83454 0.81861 0.83785 0.87548 0.75324 0.75856 0.93578 0.93974 0.97502 0.97234 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.51 71.98 0.68 -1.46 16 2 C 0.08 1.30 3.93 31.18 0.12 1.43 16 3 H 0.14 1.81 8.08 -2.39 -0.02 1.79 16 4 O -0.30 -6.38 10.81 -95.07 -1.03 -7.41 16 5 C 0.10 2.29 6.92 22.69 0.16 2.45 16 6 C -0.15 -2.81 10.06 22.45 0.23 -2.58 16 7 C -0.07 -1.26 10.02 22.21 0.22 -1.04 16 8 C -0.16 -3.26 10.07 22.31 0.22 -3.04 16 9 C -0.07 -1.92 10.03 22.16 0.22 -1.70 16 10 C -0.20 -5.27 5.93 -19.52 -0.12 -5.39 16 11 C 0.18 4.20 2.98 45.13 0.13 4.33 16 12 H 0.10 2.66 7.41 -2.39 -0.02 2.64 16 13 N -0.72 -18.74 5.16 -457.15 -2.36 -21.10 16 14 C 0.70 24.69 8.57 179.06 1.53 26.22 16 15 O -0.63 -26.99 16.03 -3.99 -0.06 -27.06 16 16 N -0.73 -26.24 5.56 -478.53 -2.66 -28.90 16 17 C 0.16 7.11 5.61 86.38 0.48 7.60 16 18 C 0.02 1.25 5.09 29.85 0.15 1.40 16 19 C -0.55 -30.85 9.11 25.60 0.23 -30.62 16 20 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 21 C 0.01 0.42 5.46 84.65 0.46 0.88 16 22 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 23 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.88 8.08 -2.39 -0.02 0.86 16 30 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 32 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.11 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.41 8.39 8.64 -92.71 -0.80 7.59 16 35 H 0.41 12.45 8.49 -92.71 -0.79 11.66 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -70.96 342.81 0.42 -70.55 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -0.53 Total: 23.97 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 4.74 Total: -1.53 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.74 Total: -104.30 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.09 Total: -34.46 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -70.96 0.42 -70.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288444516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.835 kcal (2) G-P(sol) polarization free energy of solvation -70.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds