Wall clock time and date at job start Tue Mar 31 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.54544 * 2 1 4 4 C 1.53100 * 109.50897 * 120.11110 * 2 1 3 5 5 O 1.43014 * 109.25894 * 176.78599 * 4 2 1 6 6 C 1.43019 * 113.73727 * 301.32667 * 5 4 2 7 7 C 1.53091 * 109.25830 * 58.67067 * 6 5 4 8 8 N 1.47009 * 109.26008 * 303.15238 * 7 6 5 9 9 C 1.39542 * 111.00172 * 182.39376 * 8 7 6 10 10 C 1.39122 * 119.99182 * 116.32170 * 9 8 7 11 11 C 1.37885 * 120.00441 * 179.76318 * 10 9 8 12 12 C 1.39182 * 119.99294 * 0.51387 * 11 10 9 13 13 N 1.39406 * 120.00913 * 179.76028 * 12 11 10 14 14 C 1.34773 * 120.00210 * 326.64989 * 13 12 11 15 15 O 1.21808 * 119.99698 * 354.86228 * 14 13 12 16 16 C 1.41636 * 120.00342 * 174.86554 * 14 13 12 17 17 H 1.08001 * 119.99921 * 7.51385 * 16 14 13 18 18 C 1.40150 * 120.00336 * 187.51103 * 16 14 13 19 19 N 1.30625 * 119.99372 * 7.52992 * 18 16 14 20 20 Si 1.86799 * 119.99892 * 187.52845 * 18 16 14 21 21 H 1.48503 * 109.47109 * 94.98710 * 20 18 16 22 22 H 1.48503 * 109.46651 * 214.98261 * 20 18 16 23 23 H 1.48494 * 109.47425 * 334.98479 * 20 18 16 24 24 C 1.39194 * 119.98520 * 359.74196 * 12 11 10 25 25 C 1.37874 * 119.99027 * 359.97438 * 24 12 11 26 26 H 1.09000 * 109.47519 * 302.70240 * 1 2 3 27 27 H 1.08997 * 109.47801 * 62.70391 * 1 2 3 28 28 H 1.09003 * 109.47257 * 182.70279 * 1 2 3 29 29 H 1.08994 * 109.51029 * 56.84436 * 4 2 1 30 30 H 1.09009 * 109.50035 * 296.71536 * 4 2 1 31 31 H 1.08994 * 109.50573 * 178.61097 * 6 5 4 32 32 H 1.09004 * 109.50449 * 298.69053 * 6 5 4 33 33 H 1.08999 * 109.50625 * 63.08803 * 7 6 5 34 34 H 1.09001 * 109.50587 * 183.22103 * 7 6 5 35 35 H 1.07993 * 119.99653 * 0.02562 * 10 9 8 36 36 H 1.08004 * 120.00041 * 180.27471 * 11 10 9 37 37 H 0.97004 * 120.00215 * 146.64614 * 13 12 11 38 38 H 0.97000 * 119.99458 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.00762 * 180.02562 * 24 12 11 40 40 H 1.08002 * 119.99811 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 1.2484 5 8 3.4693 -0.7867 1.2056 6 6 3.9818 -1.4578 0.0513 7 6 3.4902 -0.7414 -1.2091 8 7 2.0209 -0.6952 -1.1988 9 6 1.5312 -0.0961 -2.3600 10 6 0.7534 -0.8326 -3.2477 11 6 0.2653 -0.2395 -4.3928 12 6 0.5597 1.0931 -4.6658 13 7 0.0705 1.6916 -5.8260 14 6 -0.0737 0.9633 -6.9507 15 8 0.3101 -0.1923 -6.9813 16 6 -0.6714 1.5416 -8.0972 17 1 -0.9008 2.5969 -8.1124 18 6 -0.9652 0.7445 -9.2119 19 7 -0.8257 -0.5524 -9.1423 20 14 -1.5563 1.5368 -10.7969 21 1 -0.3996 1.7558 -11.7021 22 1 -2.5410 0.6440 -11.4592 23 1 -2.1981 2.8401 -10.4896 24 6 1.3424 1.8282 -3.7801 25 6 1.8252 1.2362 -2.6324 26 1 -0.3634 0.5552 0.8647 27 1 -0.3634 0.4712 -0.9132 28 1 -0.3634 -1.0265 0.0485 29 1 1.6331 -1.7343 1.2760 30 1 1.7273 -0.1794 2.1390 31 1 5.0714 -1.4442 0.0763 32 1 3.6308 -2.4898 0.0445 33 1 3.8862 0.2740 -1.2285 34 1 3.8311 -1.2826 -2.0918 35 1 0.5283 -1.8678 -3.0378 36 1 -0.3423 -0.8102 -5.0796 37 1 -0.1661 2.6324 -5.8237 38 1 -1.0287 -1.1041 -9.9139 39 1 1.5707 2.8625 -3.9915 40 1 2.4322 1.8066 -1.9449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292757117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:45 Heat of formation + Delta-G solvation = -45.262102 kcal Electronic energy + Delta-G solvation = -22940.793346 eV Core-core repulsion = 19527.560241 eV Total energy + Delta-G solvation = -3413.233105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37140 -38.88488 -37.30604 -35.43184 -33.23896 -32.62838 -32.31236 -30.36676 -29.22255 -27.50983 -26.60022 -25.28144 -22.78800 -22.60077 -21.56944 -20.36879 -19.41561 -17.56823 -17.13184 -16.40051 -16.23462 -15.60860 -15.48849 -15.02844 -14.89357 -14.75216 -14.07461 -13.85837 -13.55287 -13.04967 -12.88028 -12.68092 -12.52722 -12.17458 -12.02656 -11.86977 -11.81503 -11.39656 -11.29674 -11.18712 -11.12615 -10.80741 -10.64520 -10.57986 -10.37162 -9.73216 -9.21956 -8.88396 -8.43345 -8.40038 -7.74632 -6.99071 -6.45695 -4.93103 1.87774 1.98155 3.02601 3.10613 3.13839 3.67776 3.82734 3.95174 4.16827 4.48400 4.66608 4.71104 4.88299 5.00862 5.07579 5.14032 5.32468 5.37756 5.45312 5.49187 5.53030 5.67889 5.69819 5.72774 5.78762 5.93723 5.95840 6.10774 6.21346 6.35575 6.57479 6.62834 6.89698 6.92002 7.03267 7.10324 7.19983 7.35978 7.67134 7.84667 8.01423 8.18949 8.76690 9.24707 10.33921 10.53775 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042584 B = 0.003156 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.367458 B = 8869.372544 C = 8985.313548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 H 0.050 0.950 4 C 0.069 3.931 5 O -0.389 6.389 6 C 0.064 3.936 7 C 0.022 3.978 8 N -0.488 5.488 9 C 0.032 3.968 10 C -0.070 4.070 11 C -0.125 4.125 12 C 0.198 3.802 13 N -0.702 5.702 14 C 0.546 3.454 15 O -0.568 6.568 16 C -0.542 4.542 17 H 0.070 0.930 18 C 0.090 3.910 19 N -0.749 5.749 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.171 4.171 25 C -0.125 4.125 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.391 0.609 38 H 0.274 0.726 39 H 0.114 0.886 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 1.549 15.863 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.058 4.058 3 H 0.068 0.932 4 C -0.008 4.008 5 O -0.307 6.307 6 C -0.013 4.013 7 C -0.105 4.105 8 N -0.211 5.211 9 C -0.063 4.063 10 C -0.090 4.090 11 C -0.146 4.146 12 C 0.098 3.902 13 N -0.345 5.345 14 C 0.355 3.645 15 O -0.452 6.452 16 C -0.577 4.577 17 H 0.089 0.911 18 C -0.133 4.133 19 N -0.376 5.376 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.194 4.194 25 C -0.146 4.146 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.160 0.840 37 H 0.225 0.775 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.982 0.128 15.801 16.296 hybrid contribution -0.177 1.703 -1.146 2.060 sum 3.805 1.831 14.655 15.252 Atomic orbital electron populations 1.21748 0.93262 1.02666 1.02361 1.22339 0.96686 0.96312 0.90480 0.93235 1.22745 0.80765 1.00382 0.96929 1.87955 1.20843 1.78575 1.43341 1.22693 0.98778 0.95736 0.84102 1.22833 0.87688 1.00470 0.99474 1.59745 1.07900 1.52904 1.00532 1.18398 1.02983 0.91816 0.93055 1.20816 0.96261 0.99192 0.92742 1.21351 1.01732 0.94981 0.96569 1.18062 0.92034 0.93129 0.86990 1.44221 1.67172 1.13627 1.09440 1.17017 0.80081 0.85881 0.81514 1.90659 1.53409 1.17848 1.83291 1.20024 1.41884 0.96668 0.99097 0.91142 1.25744 0.93301 0.94352 0.99891 1.69959 1.32683 1.04862 1.30102 0.86269 0.79010 0.79879 0.81159 1.19527 1.20208 1.18678 1.20732 1.01383 1.00363 0.96900 1.21129 1.00792 0.95245 0.97390 0.92307 0.91463 0.91786 0.92232 0.88673 0.88545 0.92222 0.93800 0.89367 0.86184 0.84023 0.77541 0.91524 0.86758 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.09 37.15 0.34 -1.26 16 2 C 0.05 0.59 2.32 -67.60 -0.16 0.43 16 3 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 4 C 0.07 0.72 6.29 37.21 0.23 0.96 16 5 O -0.39 -4.66 10.83 -35.23 -0.38 -5.04 16 6 C 0.06 0.68 7.01 37.20 0.26 0.94 16 7 C 0.02 0.28 5.40 -3.72 -0.02 0.26 16 8 N -0.49 -6.69 4.52 -163.19 -0.74 -7.43 16 9 C 0.03 0.51 3.18 -83.69 -0.27 0.25 16 10 C -0.07 -1.27 9.96 -39.38 -0.39 -1.66 16 11 C -0.12 -2.65 8.64 -39.36 -0.34 -2.99 16 12 C 0.20 4.10 6.28 -83.71 -0.53 3.58 16 13 N -0.70 -15.68 5.31 -12.42 -0.07 -15.75 16 14 C 0.55 14.96 7.27 -14.97 -0.11 14.86 16 15 O -0.57 -17.52 12.65 5.09 0.06 -17.46 16 16 C -0.54 -14.58 9.30 -37.57 -0.35 -14.93 16 17 H 0.07 1.72 7.86 -52.49 -0.41 1.31 16 18 C 0.09 2.40 5.47 -17.35 -0.09 2.30 16 19 N -0.75 -21.30 11.83 55.56 0.66 -20.64 16 20 Si 0.91 19.15 29.57 -169.99 -5.03 14.12 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.17 -2.99 9.96 -39.36 -0.39 -3.38 16 25 C -0.12 -1.98 8.61 -39.39 -0.34 -2.32 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.89 7.07 -51.93 -0.37 0.52 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.56 7.39 -51.93 -0.38 0.17 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.14 3.46 6.40 -52.48 -0.34 3.13 16 37 H 0.39 7.49 8.77 -40.82 -0.36 7.13 16 38 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 39 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.11 1.52 7.03 -52.49 -0.37 1.15 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -31.85 327.92 -8.24 -40.09 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.54 Total: 10.14 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.15 Total: -2.98 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.15 Total: -43.81 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.32 Total: -22.49 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.85 -8.24 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292757117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.176 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds