Wall clock time and date at job start Tue Mar 31 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.54544 * 2 1 4 4 C 1.53100 * 109.50897 * 120.11110 * 2 1 3 5 5 O 1.43014 * 109.25894 * 176.78599 * 4 2 1 6 6 C 1.43019 * 113.73727 * 301.32667 * 5 4 2 7 7 C 1.53091 * 109.25830 * 58.67067 * 6 5 4 8 8 N 1.47009 * 109.26008 * 303.15238 * 7 6 5 9 9 C 1.39542 * 111.00172 * 182.39376 * 8 7 6 10 10 C 1.39122 * 119.99182 * 116.32170 * 9 8 7 11 11 C 1.37885 * 120.00441 * 179.76318 * 10 9 8 12 12 C 1.39182 * 119.99294 * 0.51387 * 11 10 9 13 13 N 1.39406 * 120.00913 * 179.76028 * 12 11 10 14 14 C 1.34773 * 120.00210 * 326.64989 * 13 12 11 15 15 O 1.21808 * 119.99698 * 354.86228 * 14 13 12 16 16 C 1.41636 * 120.00342 * 174.86554 * 14 13 12 17 17 H 1.08001 * 119.99921 * 7.51385 * 16 14 13 18 18 C 1.40150 * 120.00336 * 187.51103 * 16 14 13 19 19 N 1.30625 * 119.99372 * 7.52992 * 18 16 14 20 20 Si 1.86799 * 119.99892 * 187.52845 * 18 16 14 21 21 H 1.48503 * 109.47109 * 94.98710 * 20 18 16 22 22 H 1.48503 * 109.46651 * 214.98261 * 20 18 16 23 23 H 1.48494 * 109.47425 * 334.98479 * 20 18 16 24 24 C 1.39194 * 119.98520 * 359.74196 * 12 11 10 25 25 C 1.37874 * 119.99027 * 359.97438 * 24 12 11 26 26 H 1.09000 * 109.47519 * 302.70240 * 1 2 3 27 27 H 1.08997 * 109.47801 * 62.70391 * 1 2 3 28 28 H 1.09003 * 109.47257 * 182.70279 * 1 2 3 29 29 H 1.08994 * 109.51029 * 56.84436 * 4 2 1 30 30 H 1.09009 * 109.50035 * 296.71536 * 4 2 1 31 31 H 1.08994 * 109.50573 * 178.61097 * 6 5 4 32 32 H 1.09004 * 109.50449 * 298.69053 * 6 5 4 33 33 H 1.08999 * 109.50625 * 63.08803 * 7 6 5 34 34 H 1.09001 * 109.50587 * 183.22103 * 7 6 5 35 35 H 1.07993 * 119.99653 * 0.02562 * 10 9 8 36 36 H 1.08004 * 120.00041 * 180.27471 * 11 10 9 37 37 H 0.97004 * 120.00215 * 146.64614 * 13 12 11 38 38 H 0.97000 * 119.99458 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.00762 * 180.02562 * 24 12 11 40 40 H 1.08002 * 119.99811 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 1.2484 5 8 3.4693 -0.7867 1.2056 6 6 3.9818 -1.4578 0.0513 7 6 3.4902 -0.7414 -1.2091 8 7 2.0209 -0.6952 -1.1988 9 6 1.5312 -0.0961 -2.3600 10 6 0.7534 -0.8326 -3.2477 11 6 0.2653 -0.2395 -4.3928 12 6 0.5597 1.0931 -4.6658 13 7 0.0705 1.6916 -5.8260 14 6 -0.0737 0.9633 -6.9507 15 8 0.3101 -0.1923 -6.9813 16 6 -0.6714 1.5416 -8.0972 17 1 -0.9008 2.5969 -8.1124 18 6 -0.9652 0.7445 -9.2119 19 7 -0.8257 -0.5524 -9.1423 20 14 -1.5563 1.5368 -10.7969 21 1 -0.3996 1.7558 -11.7021 22 1 -2.5410 0.6440 -11.4592 23 1 -2.1981 2.8401 -10.4896 24 6 1.3424 1.8282 -3.7801 25 6 1.8252 1.2362 -2.6324 26 1 -0.3634 0.5552 0.8647 27 1 -0.3634 0.4712 -0.9132 28 1 -0.3634 -1.0265 0.0485 29 1 1.6331 -1.7343 1.2760 30 1 1.7273 -0.1794 2.1390 31 1 5.0714 -1.4442 0.0763 32 1 3.6308 -2.4898 0.0445 33 1 3.8862 0.2740 -1.2285 34 1 3.8311 -1.2826 -2.0918 35 1 0.5283 -1.8678 -3.0378 36 1 -0.3423 -0.8102 -5.0796 37 1 -0.1661 2.6324 -5.8237 38 1 -1.0287 -1.1041 -9.9139 39 1 1.5707 2.8625 -3.9915 40 1 2.4322 1.8066 -1.9449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292757117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:45 Heat of formation + Delta-G solvation = -67.880337 kcal Electronic energy + Delta-G solvation = -22941.774147 eV Core-core repulsion = 19527.560241 eV Total energy + Delta-G solvation = -3414.213905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55222 -40.41422 -38.82712 -36.78007 -34.97238 -34.37357 -33.51754 -31.84215 -30.59550 -28.98889 -27.91743 -26.55844 -24.08872 -23.70917 -23.07543 -21.89788 -20.73536 -19.46151 -18.36674 -17.76539 -17.58998 -17.29656 -16.47264 -16.37604 -16.00811 -15.77674 -15.68805 -15.24972 -14.96600 -14.72920 -14.48728 -14.08844 -13.82114 -13.52623 -13.25896 -13.11293 -13.04037 -12.89904 -12.81346 -12.63441 -12.36471 -12.20905 -12.09612 -12.02234 -11.49385 -11.04636 -10.72799 -10.65589 -10.01879 -9.73711 -9.49727 -8.65289 -8.44563 -7.02718 0.40163 0.51386 1.38101 1.39316 1.55953 2.19436 2.33390 2.66531 2.83393 2.94135 3.00893 3.62798 3.80443 3.91729 4.02602 4.05975 4.13683 4.19133 4.24278 4.44235 4.49746 4.57840 4.65862 4.73171 4.76456 4.82318 4.89570 4.93197 5.04833 5.11730 5.19657 5.20847 5.31239 5.51111 5.54438 5.81111 5.88339 5.92330 6.16687 6.17131 6.28138 6.53304 6.71958 7.37805 8.36127 8.53786 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042584 B = 0.003156 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.367458 B = 8869.372544 C = 8985.313548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.049 3.951 3 H 0.049 0.951 4 C 0.070 3.930 5 O -0.400 6.400 6 C 0.067 3.933 7 C 0.020 3.980 8 N -0.498 5.498 9 C 0.056 3.944 10 C -0.075 4.075 11 C -0.146 4.146 12 C 0.162 3.838 13 N -0.696 5.696 14 C 0.532 3.468 15 O -0.616 6.616 16 C -0.569 4.569 17 H 0.091 0.909 18 C 0.034 3.966 19 N -0.802 5.802 20 Si 1.002 2.998 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.246 1.246 24 C -0.156 4.156 25 C -0.118 4.118 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.406 0.594 38 H 0.280 0.720 39 H 0.140 0.860 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 3.309 17.441 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.058 4.058 3 H 0.067 0.933 4 C -0.006 4.006 5 O -0.318 6.318 6 C -0.009 4.009 7 C -0.106 4.106 8 N -0.221 5.221 9 C -0.039 4.039 10 C -0.095 4.095 11 C -0.168 4.168 12 C 0.065 3.935 13 N -0.340 5.340 14 C 0.342 3.658 15 O -0.503 6.503 16 C -0.604 4.604 17 H 0.109 0.891 18 C -0.185 4.185 19 N -0.430 5.430 20 Si 0.820 3.180 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.169 1.169 24 C -0.178 4.178 25 C -0.138 4.138 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.720 1.921 17.447 18.176 hybrid contribution -0.343 1.107 -1.423 1.835 sum 4.377 3.028 16.024 16.885 Atomic orbital electron populations 1.21732 0.92909 1.02790 1.02298 1.22443 0.96951 0.96284 0.90119 0.93270 1.22848 0.80166 1.00749 0.96873 1.87952 1.21527 1.78710 1.43633 1.22762 1.00025 0.95399 0.82744 1.22902 0.86480 1.00777 1.00468 1.59769 1.08989 1.53120 1.00218 1.18460 1.00719 0.91654 0.93034 1.20825 0.96710 0.99651 0.92270 1.21077 1.02891 0.95516 0.97333 1.18267 0.94282 0.93434 0.87549 1.43740 1.67379 1.13944 1.08970 1.17366 0.79841 0.85604 0.83018 1.90616 1.55371 1.19849 1.84511 1.20558 1.42205 0.97864 0.99735 0.89104 1.27017 0.92708 0.94688 1.04050 1.70109 1.34124 1.07024 1.31750 0.84947 0.78552 0.79211 0.75253 1.18881 1.19416 1.16896 1.20946 0.99589 1.01180 0.96107 1.21427 1.00149 0.95220 0.97052 0.89749 0.93845 0.91896 0.91935 0.86305 0.86355 0.91928 0.93695 0.89963 0.85663 0.88533 0.75899 0.90955 0.84189 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.09 71.98 0.65 -2.19 16 2 C 0.05 1.04 2.32 44.92 0.10 1.14 16 3 H 0.05 1.07 7.22 -2.39 -0.02 1.05 16 4 C 0.07 1.25 6.29 72.02 0.45 1.70 16 5 O -0.40 -8.29 10.83 -148.98 -1.61 -9.90 16 6 C 0.07 1.24 7.01 72.01 0.50 1.75 16 7 C 0.02 0.46 5.40 86.31 0.47 0.93 16 8 N -0.50 -12.73 4.52 -670.23 -3.03 -15.76 16 9 C 0.06 1.73 3.18 38.34 0.12 1.86 16 10 C -0.08 -2.78 9.96 22.40 0.22 -2.56 16 11 C -0.15 -6.62 8.64 22.41 0.19 -6.42 16 12 C 0.16 6.95 6.28 38.39 0.24 7.20 16 13 N -0.70 -32.19 5.31 -311.37 -1.65 -33.84 16 14 C 0.53 30.59 7.27 85.08 0.62 31.21 16 15 O -0.62 -40.48 12.65 -4.70 -0.06 -40.54 16 16 C -0.57 -31.38 9.30 23.57 0.22 -31.16 16 17 H 0.09 4.45 7.86 -2.91 -0.02 4.42 16 18 C 0.03 1.82 5.47 85.34 0.47 2.29 16 19 N -0.80 -47.55 11.83 21.85 0.26 -47.29 16 20 Si 1.00 39.39 29.57 68.60 2.03 41.42 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 24 C -0.16 -5.26 9.96 22.41 0.22 -5.04 16 25 C -0.12 -3.50 8.61 22.40 0.19 -3.30 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.09 7.07 -2.39 -0.02 1.08 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.04 1.01 7.39 -2.39 -0.02 0.99 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.10 5.22 6.40 -2.91 -0.02 5.20 16 37 H 0.41 15.73 8.77 -92.71 -0.81 14.91 16 38 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 39 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 40 H 0.14 3.33 7.03 -2.91 -0.02 3.31 16 Total: -1.00 -73.11 327.92 0.86 -72.26 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.24 Total: 36.24 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 4.68 Total: -2.60 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -4.42 Total: -96.89 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -1.67 Total: -50.44 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -73.11 0.86 -72.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292757117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.375 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds