Wall clock time and date at job start Tue Mar 31 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50640 * 2 1 4 4 C 1.53097 * 109.50176 * 120.12723 * 2 1 3 5 5 N 1.47018 * 109.25685 * 176.78339 * 4 2 1 6 6 C 1.39539 * 111.00166 * 177.60874 * 5 4 2 7 7 C 1.39123 * 119.99127 * 179.68141 * 6 5 4 8 8 C 1.37879 * 120.00964 * 179.97438 * 7 6 5 9 9 C 1.39197 * 119.98888 * 359.97438 * 8 7 6 10 10 N 1.39399 * 120.00586 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99475 * 144.89783 * 10 9 8 12 12 O 1.21804 * 120.00297 * 4.61465 * 11 10 9 13 13 C 1.41646 * 119.99785 * 184.61552 * 11 10 9 14 14 H 1.08001 * 119.99966 * 359.97438 * 13 11 10 15 15 C 1.40142 * 119.99973 * 180.02562 * 13 11 10 16 16 N 1.30625 * 119.99924 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00059 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46995 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47247 * 119.99693 * 17 15 13 20 20 H 1.48504 * 109.47089 * 239.99784 * 17 15 13 21 21 C 1.39191 * 119.98007 * 0.27910 * 9 8 7 22 22 C 1.37871 * 119.99414 * 359.46450 * 21 9 8 23 23 C 1.47019 * 110.75250 * 301.38787 * 5 4 2 24 24 C 1.53096 * 109.25590 * 58.61417 * 23 5 4 25 25 O 1.43013 * 109.26178 * 303.14814 * 24 23 5 26 26 H 1.09002 * 109.47188 * 180.08600 * 1 2 3 27 27 H 1.08998 * 109.47397 * 300.09023 * 1 2 3 28 28 H 1.09006 * 109.46802 * 60.08872 * 1 2 3 29 29 H 1.09000 * 109.50999 * 56.85339 * 4 2 1 30 30 H 1.08991 * 109.51036 * 296.71874 * 4 2 1 31 31 H 1.08000 * 119.99721 * 359.97438 * 7 6 5 32 32 H 1.07992 * 120.00372 * 180.02562 * 8 7 6 33 33 H 0.97003 * 120.00277 * 325.17262 * 10 9 8 34 34 H 0.97002 * 119.99856 * 180.02562 * 16 15 13 35 35 H 1.08006 * 120.00235 * 179.69915 * 21 9 8 36 36 H 1.08001 * 119.99552 * 180.23541 * 22 21 9 37 37 H 1.09004 * 109.50178 * 178.54755 * 23 5 4 38 38 H 1.09000 * 109.50599 * 298.67795 * 23 5 4 39 39 H 1.09000 * 109.50848 * 63.08864 * 24 23 5 40 40 H 1.09008 * 109.50417 * 183.21709 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0411 -0.7243 1.2482 5 7 3.5092 -0.7889 1.2043 6 6 4.0177 -1.3958 2.3533 7 6 5.3910 -1.5597 2.5036 8 6 5.8939 -2.1588 3.6390 9 6 5.0273 -2.5991 4.6354 10 7 5.5352 -3.2054 5.7832 11 6 4.9326 -3.0079 6.9725 12 8 3.8971 -2.3693 7.0319 13 6 5.5035 -3.5429 8.1532 14 1 6.4215 -4.1094 8.1004 15 6 4.8766 -3.3380 9.3898 16 7 3.7661 -2.6532 9.4535 17 14 5.6292 -4.0442 10.9468 18 1 6.8771 -4.7738 10.6067 19 1 5.9419 -2.9406 11.8901 20 1 4.6665 -4.9800 11.5815 21 6 3.6530 -2.4397 4.4822 22 6 3.1513 -1.8357 3.3489 23 6 3.9639 -1.4884 -0.0062 24 6 3.4334 -0.7563 -1.2417 25 8 2.0076 -0.6758 -1.1664 26 1 -0.3634 -1.0277 0.0015 27 1 -0.3634 0.5152 0.8891 28 1 -0.3633 0.5125 -0.8908 29 1 1.6331 -1.7347 1.2754 30 1 1.7272 -0.1803 2.1389 31 1 6.0634 -1.2176 1.7307 32 1 6.9600 -2.2856 3.7557 33 1 6.3248 -3.7661 5.7267 34 1 3.3324 -2.5111 10.3094 35 1 2.9800 -2.7856 5.2529 36 1 2.0852 -1.7086 3.2318 37 1 5.0536 -1.5020 -0.0310 38 1 3.5866 -2.5110 0.0009 39 1 3.8534 0.2489 -1.2775 40 1 3.7201 -1.3034 -2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292809834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:33 Heat of formation + Delta-G solvation = -43.576147 kcal Electronic energy + Delta-G solvation = -22694.910535 eV Core-core repulsion = 19281.750539 eV Total energy + Delta-G solvation = -3413.159997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37938 -38.88919 -37.35075 -35.31459 -33.09056 -33.03448 -32.30251 -30.48069 -29.27558 -27.82794 -26.57517 -25.17690 -23.41170 -21.82904 -21.46874 -20.45098 -19.61893 -17.55764 -17.22861 -16.51908 -16.08971 -15.66112 -15.47121 -15.25751 -14.86598 -14.49066 -14.17324 -13.75968 -13.55673 -13.18825 -12.80761 -12.65141 -12.56769 -12.50108 -12.01127 -11.87630 -11.78517 -11.57039 -11.32364 -11.25483 -11.15706 -10.69861 -10.64617 -10.57886 -10.31756 -9.91922 -9.43335 -9.00523 -8.45131 -8.40422 -7.68268 -6.73900 -6.38055 -4.90872 1.92290 2.02339 3.02921 3.11791 3.16283 3.54975 3.75581 3.97197 4.25112 4.50207 4.64489 4.73860 4.83282 4.86310 4.97751 5.07798 5.22825 5.34666 5.41019 5.44042 5.48358 5.56411 5.67300 5.70156 5.72717 5.84789 5.93321 5.94611 6.05426 6.17024 6.58324 6.61269 6.65619 7.00387 7.15448 7.18575 7.22975 7.28922 7.57998 7.88156 8.04739 8.24920 8.79694 9.30455 10.37829 10.59067 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.003126 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.342233 B = 8953.562853 C = 9599.222812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.067 0.933 4 C 0.021 3.979 5 N -0.484 5.484 6 C 0.052 3.948 7 C -0.115 4.115 8 C -0.156 4.156 9 C 0.175 3.825 10 N -0.703 5.703 11 C 0.544 3.456 12 O -0.568 6.568 13 C -0.539 4.539 14 H 0.070 0.930 15 C 0.088 3.912 16 N -0.747 5.747 17 Si 0.912 3.088 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.105 4.105 22 C -0.144 4.144 23 C 0.020 3.980 24 C 0.064 3.936 25 O -0.384 6.384 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.391 0.609 34 H 0.272 0.728 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.059 0.941 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 2.218 -16.895 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.085 0.915 4 C -0.107 4.107 5 N -0.201 5.201 6 C -0.044 4.044 7 C -0.136 4.136 8 C -0.178 4.178 9 C 0.075 3.925 10 N -0.346 5.346 11 C 0.353 3.647 12 O -0.452 6.452 13 C -0.574 4.574 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.375 5.375 17 Si 0.736 3.264 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.127 4.127 22 C -0.166 4.166 23 C -0.107 4.107 24 C -0.013 4.013 25 O -0.304 6.304 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.224 0.776 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.537 3.152 -16.830 17.191 hybrid contribution 0.830 -1.159 1.111 1.808 sum -0.707 1.993 -15.719 15.860 Atomic orbital electron populations 1.21753 0.92659 1.03101 1.02721 1.22206 0.94951 0.95616 0.84182 0.91517 1.22956 0.87298 1.00909 0.99514 1.59429 1.09128 1.50100 1.01434 1.18672 0.93505 1.00033 0.92240 1.20327 0.92903 1.02039 0.98319 1.20775 0.98717 1.02787 0.95508 1.17996 0.92242 0.94718 0.87495 1.44085 1.32732 1.51381 1.06420 1.17032 0.84743 0.81425 0.81478 1.90640 1.24734 1.44620 1.85201 1.20058 1.10592 1.35604 0.91156 0.91176 1.25766 0.93960 0.93375 1.00411 1.70020 1.13568 1.27738 1.26174 0.86237 0.79886 0.79273 0.80962 1.18572 1.19929 1.19933 1.21404 0.94851 0.99651 0.96785 1.21148 0.98770 1.01303 0.95335 1.22922 1.01547 0.96468 0.89740 1.22670 0.81074 1.00332 0.97189 1.87969 1.21015 1.78505 1.42866 0.91759 0.90702 0.91596 0.92930 0.88938 0.86658 0.86405 0.77625 0.91722 0.83891 0.86402 0.89197 0.93336 0.92300 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.57 37.16 0.36 -0.93 16 2 C 0.09 0.97 3.43 -26.68 -0.09 0.88 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.02 0.26 3.61 -3.71 -0.01 0.25 16 5 N -0.48 -6.77 4.77 -170.71 -0.81 -7.58 16 6 C 0.05 0.86 5.65 -83.70 -0.47 0.39 16 7 C -0.12 -1.85 9.19 -39.38 -0.36 -2.21 16 8 C -0.16 -2.74 9.96 -39.36 -0.39 -3.14 16 9 C 0.17 3.70 6.30 -83.71 -0.53 3.18 16 10 N -0.70 -15.92 5.30 -12.41 -0.07 -15.98 16 11 C 0.54 15.10 7.41 -14.96 -0.11 14.99 16 12 O -0.57 -17.68 12.31 5.10 0.06 -17.62 16 13 C -0.54 -14.65 9.31 -37.57 -0.35 -15.00 16 14 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 15 C 0.09 2.35 5.50 -17.35 -0.10 2.26 16 16 N -0.75 -21.51 11.73 55.56 0.65 -20.86 16 17 Si 0.91 19.29 29.56 -169.99 -5.02 14.27 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.11 -2.28 8.68 -39.36 -0.34 -2.63 16 22 C -0.14 -2.64 8.81 -39.39 -0.35 -2.99 16 23 C 0.02 0.23 5.40 -3.71 -0.02 0.21 16 24 C 0.06 0.64 7.01 37.21 0.26 0.90 16 25 O -0.38 -4.57 10.47 -35.23 -0.37 -4.94 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.69 7.55 -51.93 -0.39 0.30 16 30 H 0.09 1.18 7.20 -51.93 -0.37 0.81 16 31 H 0.12 1.55 7.17 -52.49 -0.38 1.18 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.39 7.56 8.78 -40.82 -0.36 7.21 16 34 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 35 H 0.14 3.53 6.23 -52.48 -0.33 3.21 16 36 H 0.12 1.93 5.80 -52.49 -0.30 1.63 16 37 H 0.09 0.94 6.83 -51.93 -0.35 0.58 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -32.90 326.03 -8.57 -41.47 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -5.42 Total: 10.18 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.51 Total: -3.84 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.23 Total: -44.42 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.31 Total: -22.56 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.90 -8.57 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292809834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.106 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds