Wall clock time and date at job start Tue Mar 31 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50640 * 2 1 4 4 C 1.53097 * 109.50176 * 120.12723 * 2 1 3 5 5 N 1.47018 * 109.25685 * 176.78339 * 4 2 1 6 6 C 1.39539 * 111.00166 * 177.60874 * 5 4 2 7 7 C 1.39123 * 119.99127 * 179.68141 * 6 5 4 8 8 C 1.37879 * 120.00964 * 179.97438 * 7 6 5 9 9 C 1.39197 * 119.98888 * 359.97438 * 8 7 6 10 10 N 1.39399 * 120.00586 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99475 * 144.89783 * 10 9 8 12 12 O 1.21804 * 120.00297 * 4.61465 * 11 10 9 13 13 C 1.41646 * 119.99785 * 184.61552 * 11 10 9 14 14 H 1.08001 * 119.99966 * 359.97438 * 13 11 10 15 15 C 1.40142 * 119.99973 * 180.02562 * 13 11 10 16 16 N 1.30625 * 119.99924 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00059 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46995 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47247 * 119.99693 * 17 15 13 20 20 H 1.48504 * 109.47089 * 239.99784 * 17 15 13 21 21 C 1.39191 * 119.98007 * 0.27910 * 9 8 7 22 22 C 1.37871 * 119.99414 * 359.46450 * 21 9 8 23 23 C 1.47019 * 110.75250 * 301.38787 * 5 4 2 24 24 C 1.53096 * 109.25590 * 58.61417 * 23 5 4 25 25 O 1.43013 * 109.26178 * 303.14814 * 24 23 5 26 26 H 1.09002 * 109.47188 * 180.08600 * 1 2 3 27 27 H 1.08998 * 109.47397 * 300.09023 * 1 2 3 28 28 H 1.09006 * 109.46802 * 60.08872 * 1 2 3 29 29 H 1.09000 * 109.50999 * 56.85339 * 4 2 1 30 30 H 1.08991 * 109.51036 * 296.71874 * 4 2 1 31 31 H 1.08000 * 119.99721 * 359.97438 * 7 6 5 32 32 H 1.07992 * 120.00372 * 180.02562 * 8 7 6 33 33 H 0.97003 * 120.00277 * 325.17262 * 10 9 8 34 34 H 0.97002 * 119.99856 * 180.02562 * 16 15 13 35 35 H 1.08006 * 120.00235 * 179.69915 * 21 9 8 36 36 H 1.08001 * 119.99552 * 180.23541 * 22 21 9 37 37 H 1.09004 * 109.50178 * 178.54755 * 23 5 4 38 38 H 1.09000 * 109.50599 * 298.67795 * 23 5 4 39 39 H 1.09000 * 109.50848 * 63.08864 * 24 23 5 40 40 H 1.09008 * 109.50417 * 183.21709 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0411 -0.7243 1.2482 5 7 3.5092 -0.7889 1.2043 6 6 4.0177 -1.3958 2.3533 7 6 5.3910 -1.5597 2.5036 8 6 5.8939 -2.1588 3.6390 9 6 5.0273 -2.5991 4.6354 10 7 5.5352 -3.2054 5.7832 11 6 4.9326 -3.0079 6.9725 12 8 3.8971 -2.3693 7.0319 13 6 5.5035 -3.5429 8.1532 14 1 6.4215 -4.1094 8.1004 15 6 4.8766 -3.3380 9.3898 16 7 3.7661 -2.6532 9.4535 17 14 5.6292 -4.0442 10.9468 18 1 6.8771 -4.7738 10.6067 19 1 5.9419 -2.9406 11.8901 20 1 4.6665 -4.9800 11.5815 21 6 3.6530 -2.4397 4.4822 22 6 3.1513 -1.8357 3.3489 23 6 3.9639 -1.4884 -0.0062 24 6 3.4334 -0.7563 -1.2417 25 8 2.0076 -0.6758 -1.1664 26 1 -0.3634 -1.0277 0.0015 27 1 -0.3634 0.5152 0.8891 28 1 -0.3633 0.5125 -0.8908 29 1 1.6331 -1.7347 1.2754 30 1 1.7272 -0.1803 2.1389 31 1 6.0634 -1.2176 1.7307 32 1 6.9600 -2.2856 3.7557 33 1 6.3248 -3.7661 5.7267 34 1 3.3324 -2.5111 10.3094 35 1 2.9800 -2.7856 5.2529 36 1 2.0852 -1.7086 3.2318 37 1 5.0536 -1.5020 -0.0310 38 1 3.5866 -2.5110 0.0009 39 1 3.8534 0.2489 -1.2775 40 1 3.7201 -1.3034 -2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292809834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:32 Heat of formation + Delta-G solvation = -67.220872 kcal Electronic energy + Delta-G solvation = -22695.935848 eV Core-core repulsion = 19281.750539 eV Total energy + Delta-G solvation = -3414.185309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55490 -40.40274 -38.89601 -36.73298 -34.88762 -34.23795 -33.92713 -31.89034 -30.57892 -29.20348 -28.14040 -26.45262 -24.53648 -23.11779 -22.95646 -21.70637 -21.13708 -19.43198 -18.51306 -17.69616 -17.55444 -17.36152 -16.62777 -16.43542 -15.92689 -15.87486 -15.45552 -15.21068 -15.00556 -14.66908 -14.57155 -14.14877 -13.67352 -13.52077 -13.31842 -13.19636 -13.04705 -12.85105 -12.81410 -12.69973 -12.57188 -12.20106 -12.00276 -11.95533 -11.55265 -11.20823 -10.96501 -10.57875 -9.99750 -9.91754 -9.70092 -8.39361 -8.29876 -7.01817 0.45744 0.54716 1.37880 1.38897 1.57277 2.20307 2.34712 2.58318 2.79854 2.91514 3.06805 3.63963 3.74086 3.84823 3.93968 4.02982 4.09154 4.17172 4.22946 4.44277 4.50581 4.51312 4.59266 4.64823 4.68739 4.78151 4.83625 4.92850 5.03546 5.12742 5.18723 5.21664 5.27126 5.31843 5.59873 5.72223 5.89204 5.98322 6.16830 6.18453 6.20641 6.51934 6.73157 7.42445 8.38978 8.57151 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.003126 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.342233 B = 8953.562853 C = 9599.222812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.092 3.908 3 H 0.071 0.929 4 C 0.018 3.982 5 N -0.486 5.486 6 C 0.068 3.932 7 C -0.109 4.109 8 C -0.140 4.140 9 C 0.136 3.864 10 N -0.696 5.696 11 C 0.529 3.471 12 O -0.616 6.616 13 C -0.565 4.565 14 H 0.091 0.909 15 C 0.030 3.970 16 N -0.802 5.802 17 Si 1.003 2.997 18 H -0.245 1.245 19 H -0.267 1.267 20 H -0.267 1.267 21 C -0.131 4.131 22 C -0.153 4.153 23 C 0.018 3.982 24 C 0.064 3.936 25 O -0.398 6.398 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.405 0.595 34 H 0.278 0.722 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 2.399 -18.643 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.109 4.109 5 N -0.203 5.203 6 C -0.030 4.030 7 C -0.129 4.129 8 C -0.162 4.162 9 C 0.038 3.962 10 N -0.341 5.341 11 C 0.338 3.662 12 O -0.503 6.503 13 C -0.601 4.601 14 H 0.109 0.891 15 C -0.188 4.188 16 N -0.431 5.431 17 Si 0.821 3.179 18 H -0.168 1.168 19 H -0.192 1.192 20 H -0.192 1.192 21 C -0.153 4.153 22 C -0.174 4.174 23 C -0.108 4.108 24 C -0.013 4.013 25 O -0.317 6.317 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.172 0.828 32 H 0.165 0.835 33 H 0.240 0.760 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.145 0.855 37 H 0.127 0.873 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.454 3.326 -18.658 18.958 hybrid contribution 0.180 -1.144 1.428 1.839 sum 0.634 2.182 -17.230 17.379 Atomic orbital electron populations 1.21766 0.91306 1.03162 1.03766 1.22240 0.96059 0.95292 0.83025 0.91094 1.23016 0.86649 1.00719 1.00520 1.59462 1.09857 1.49600 1.01357 1.18890 0.93758 0.97903 0.92453 1.20738 0.93120 1.00616 0.98439 1.21040 0.99616 1.01129 0.94382 1.18249 0.92588 0.97082 0.88289 1.43609 1.32860 1.51792 1.05824 1.17414 0.84442 0.81105 0.83247 1.90603 1.26674 1.46624 1.86421 1.20592 1.11548 1.36149 0.91762 0.89119 1.27054 0.94048 0.93113 1.04545 1.70177 1.15632 1.29551 1.27690 0.84901 0.79297 0.78492 0.75184 1.16787 1.19196 1.19192 1.21144 0.95008 1.01942 0.97227 1.21207 0.99773 1.01402 0.94993 1.23071 1.02740 0.95971 0.89012 1.22852 0.80097 1.01028 0.97275 1.87968 1.22215 1.78612 1.42907 0.92198 0.89711 0.90527 0.93724 0.89563 0.82759 0.83536 0.75968 0.91137 0.88408 0.85525 0.87319 0.94182 0.91420 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.57 71.98 0.69 -1.64 16 2 C 0.09 1.85 3.43 30.63 0.10 1.96 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.02 0.45 3.61 86.31 0.31 0.76 16 5 N -0.49 -12.58 4.77 -694.01 -3.31 -15.89 16 6 C 0.07 2.14 5.65 38.34 0.22 2.35 16 7 C -0.11 -3.18 9.19 22.40 0.21 -2.97 16 8 C -0.14 -4.70 9.96 22.42 0.22 -4.48 16 9 C 0.14 5.90 6.30 38.40 0.24 6.14 16 10 N -0.70 -32.59 5.30 -311.36 -1.65 -34.24 16 11 C 0.53 30.78 7.41 85.08 0.63 31.41 16 12 O -0.62 -40.96 12.31 -4.68 -0.06 -41.01 16 13 C -0.57 -31.50 9.31 23.57 0.22 -31.28 16 14 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 15 C 0.03 1.66 5.50 85.33 0.47 2.13 16 16 N -0.80 -48.13 11.73 21.85 0.26 -47.87 16 17 Si 1.00 39.72 29.56 68.60 2.03 41.75 16 18 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 21 C -0.13 -6.07 8.68 22.41 0.19 -5.87 16 22 C -0.15 -5.75 8.81 22.39 0.20 -5.55 16 23 C 0.02 0.35 5.40 86.31 0.47 0.82 16 24 C 0.06 1.07 7.01 72.01 0.50 1.57 16 25 O -0.40 -8.49 10.47 -148.98 -1.56 -10.05 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.04 1.17 7.55 -2.39 -0.02 1.15 16 30 H 0.09 2.20 7.20 -2.39 -0.02 2.18 16 31 H 0.15 3.36 7.17 -2.91 -0.02 3.34 16 32 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.41 15.87 8.78 -92.71 -0.81 15.05 16 34 H 0.28 15.00 8.29 -92.71 -0.77 14.23 16 35 H 0.10 5.36 6.23 -2.91 -0.02 5.34 16 36 H 0.13 4.37 5.80 -2.91 -0.02 4.35 16 37 H 0.11 1.78 6.83 -2.38 -0.02 1.77 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -75.98 326.03 0.63 -75.35 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.25 Total: 36.61 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.67 Total: -4.65 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -4.71 Total: -98.00 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.62 Total: -51.06 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -75.98 0.63 -75.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292809834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.132 kcal (2) G-P(sol) polarization free energy of solvation -75.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds