Wall clock time and date at job start Tue Mar 31 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50706 * 109.47202 * 239.99682 * 2 1 3 5 5 H 1.07998 * 119.99680 * 240.00417 * 4 2 1 6 6 C 1.37872 * 119.99887 * 59.99841 * 4 2 1 7 7 N 1.31516 * 120.00322 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99724 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46784 * 90.00485 * 8 6 4 10 10 H 1.48497 * 109.47152 * 210.00011 * 8 6 4 11 11 H 1.48495 * 109.47375 * 330.00744 * 8 6 4 12 12 N 1.46906 * 109.46745 * 119.99756 * 2 1 3 13 13 C 1.46894 * 110.99936 * 58.95612 * 12 2 1 14 14 C 1.46893 * 110.99743 * 294.99736 * 12 2 1 15 15 C 1.50706 * 109.47004 * 189.99951 * 14 12 2 16 16 C 1.38283 * 119.89555 * 90.00417 * 15 14 12 17 17 C 1.38313 * 120.25586 * 180.30175 * 16 15 14 18 18 C 1.38399 * 119.87324 * 359.44171 * 17 16 15 19 19 C 1.39395 * 119.86537 * 0.55790 * 18 17 16 20 20 C 1.38286 * 119.90243 * 270.02533 * 15 14 12 21 21 N 1.40223 * 119.26931 * 179.70245 * 19 18 17 22 22 C 1.35079 * 118.98852 * 15.42112 * 21 19 18 23 23 O 1.21297 * 120.13257 * 181.72174 * 22 21 19 24 24 C 1.50753 * 119.74049 * 1.70559 * 22 21 19 25 25 O 1.35979 * 120.65809 * 180.31952 * 18 17 16 26 26 H 1.08999 * 109.47273 * 300.00268 * 1 2 3 27 27 H 1.09004 * 109.47019 * 60.00721 * 1 2 3 28 28 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 29 29 H 0.96993 * 120.00276 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47483 * 296.04200 * 13 12 2 31 31 H 1.09006 * 109.47462 * 56.04461 * 13 12 2 32 32 H 1.09004 * 109.46898 * 176.04666 * 13 12 2 33 33 H 1.08998 * 109.47402 * 70.00555 * 14 12 2 34 34 H 1.08995 * 109.47547 * 310.00303 * 14 12 2 35 35 H 1.08002 * 119.86961 * 0.02562 * 16 15 14 36 36 H 1.07995 * 120.06232 * 179.71076 * 17 16 15 37 37 H 1.07996 * 120.09175 * 0.02562 * 20 15 14 38 38 H 0.97002 * 120.49914 * 195.44817 * 21 19 18 39 39 H 1.08996 * 109.44548 * 88.73911 * 24 22 21 40 40 H 1.09000 * 109.44607 * 208.67422 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3226 -1.1198 -4.0079 9 1 1.3448 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3678 -0.5570 3.6006 16 6 3.6110 -0.0744 3.9663 17 6 4.2803 -0.6203 5.0466 18 6 3.6986 -1.6458 5.7714 19 6 2.4454 -2.1323 5.4027 20 6 1.7826 -1.5853 4.3165 21 7 1.8704 -3.1759 6.1420 22 6 2.3768 -3.4726 7.3586 23 8 1.9157 -4.3914 8.0025 24 6 3.5177 -2.6578 7.9128 25 8 4.3395 -2.1898 6.8402 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7095 1.1616 -3.4844 30 1 0.4419 -2.0731 1.3348 31 1 1.8167 -2.5950 0.3319 32 1 1.9616 -2.5867 2.1060 33 1 0.5722 -0.0344 2.5726 34 1 1.9297 1.0871 2.3124 35 1 4.0629 0.7290 3.4035 36 1 5.2531 -0.2441 5.3266 37 1 0.8120 -1.9614 4.0288 38 1 1.1206 -3.6772 5.7850 39 1 3.1206 -1.8055 8.4641 40 1 4.1142 -3.2772 8.5826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295333824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:36 Heat of formation + Delta-G solvation = -31.647815 kcal Electronic energy + Delta-G solvation = -22898.174390 eV Core-core repulsion = 19485.531644 eV Total energy + Delta-G solvation = -3412.642745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55883 -39.17912 -38.14076 -36.76405 -35.27132 -32.93542 -31.13784 -29.99029 -28.79274 -28.06332 -26.41707 -25.20804 -24.08827 -22.93294 -22.37636 -19.76366 -19.24783 -18.85464 -17.86225 -17.10614 -16.30016 -16.13690 -15.35404 -15.33745 -14.97478 -14.76445 -14.37380 -14.31605 -14.01228 -13.47267 -13.26942 -13.15595 -12.86662 -12.53674 -11.90288 -11.59983 -11.44590 -11.32952 -11.09151 -11.08246 -10.86429 -10.70697 -10.67383 -10.48190 -10.26386 -10.06149 -9.86622 -8.93375 -8.66037 -8.42666 -7.98531 -7.21882 -6.04742 -4.08564 0.99428 1.22398 2.09781 2.53687 3.10727 3.28723 3.35817 3.39884 3.63059 3.77937 4.39299 4.51931 4.62573 4.80416 4.90915 5.15454 5.19384 5.27156 5.28424 5.44475 5.59040 5.84442 5.95614 6.02831 6.13414 6.20816 6.31134 6.32296 6.58856 6.61250 6.64692 6.71008 6.78535 6.84638 7.05981 7.15484 7.41905 7.52855 7.66455 7.78607 8.05451 8.32277 8.53324 8.97319 9.56772 11.02322 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.003310 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.138159 B = 8458.011722 C = 8603.238817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.527 5.527 13 C 0.031 3.969 14 C 0.088 3.912 15 C -0.048 4.048 16 C -0.087 4.087 17 C -0.107 4.107 18 C 0.065 3.935 19 C 0.086 3.914 20 C -0.115 4.115 21 N -0.657 5.657 22 C 0.490 3.510 23 O -0.521 6.521 24 C 0.052 3.948 25 O -0.304 6.304 26 H 0.007 0.993 27 H 0.088 0.912 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.415 0.585 39 H 0.097 0.903 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 -2.233 17.563 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.040 4.040 15 C -0.049 4.049 16 C -0.107 4.107 17 C -0.126 4.126 18 C 0.019 3.981 19 C -0.009 4.009 20 C -0.136 4.136 21 N -0.304 5.304 22 C 0.277 3.723 23 O -0.396 6.396 24 C -0.027 4.027 25 O -0.218 6.218 26 H 0.026 0.974 27 H 0.107 0.893 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.254 0.746 39 H 0.115 0.885 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.634 -2.600 17.882 18.431 hybrid contribution -1.303 -0.731 -1.046 1.824 sum 2.331 -3.331 16.835 17.319 Atomic orbital electron populations 1.22418 1.00868 0.99371 1.00584 1.19344 0.89737 0.94621 0.85815 0.94136 1.21110 1.30638 1.12515 0.89610 0.91893 1.24917 0.95214 0.95100 0.99002 1.69876 1.37078 1.22990 1.23452 0.86531 0.79285 0.79280 0.82524 1.20856 1.21284 1.19805 1.62398 1.59403 1.01928 1.01331 1.22302 0.96582 0.91272 1.01563 1.21047 0.96194 0.98182 0.88611 1.19873 0.94789 0.94686 0.95557 1.20974 0.93923 1.00308 0.95470 1.20509 1.01186 0.94071 0.96787 1.18525 0.91284 0.96956 0.91369 1.17948 0.93987 0.92801 0.96189 1.20564 1.00460 0.97662 0.94911 1.43716 1.35428 1.33849 1.17373 1.21563 0.84598 0.84927 0.81170 1.90804 1.61227 1.29460 1.58122 1.23129 0.91333 0.98846 0.89364 1.86237 1.33255 1.75941 1.26412 0.97362 0.89301 0.95127 0.92981 0.96631 0.90671 0.93765 0.94493 0.90197 0.84465 0.84489 0.85266 0.74560 0.88489 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.27 37.16 0.31 -3.67 16 2 C 0.21 5.00 2.34 -68.86 -0.16 4.84 16 3 H 0.04 1.05 8.03 -51.93 -0.42 0.64 16 4 C -0.50 -13.18 7.88 -34.44 -0.27 -13.45 16 5 H 0.06 1.67 6.77 -52.49 -0.36 1.32 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.53 -10.49 4.73 -237.73 -1.13 -11.61 16 13 C 0.03 0.58 8.37 60.06 0.50 1.08 16 14 C 0.09 1.42 4.55 -4.98 -0.02 1.40 16 15 C -0.05 -0.66 4.89 -104.58 -0.51 -1.17 16 16 C -0.09 -1.09 9.69 -39.54 -0.38 -1.47 16 17 C -0.11 -1.21 10.00 -39.49 -0.39 -1.61 16 18 C 0.06 0.78 6.44 -39.09 -0.25 0.53 16 19 C 0.09 1.03 6.55 -83.49 -0.55 0.48 16 20 C -0.11 -1.44 7.86 -39.47 -0.31 -1.75 16 21 N -0.66 -7.30 5.47 -9.67 -0.05 -7.35 16 22 C 0.49 5.63 7.94 -10.82 -0.09 5.55 16 23 O -0.52 -7.42 17.95 5.54 0.10 -7.32 16 24 C 0.05 0.45 7.17 36.03 0.26 0.71 16 25 O -0.30 -3.37 10.45 -19.67 -0.21 -3.58 16 26 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 27 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 28 H 0.03 0.68 6.48 -51.93 -0.34 0.35 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.02 0.28 6.51 -51.93 -0.34 -0.06 16 31 H 0.07 1.53 6.42 -51.93 -0.33 1.20 16 32 H 0.04 0.73 6.16 -51.93 -0.32 0.41 16 33 H 0.04 0.60 6.88 -51.93 -0.36 0.24 16 34 H 0.08 1.28 7.94 -51.93 -0.41 0.86 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.50 8.03 -52.49 -0.42 1.08 16 38 H 0.42 4.05 8.89 -40.82 -0.36 3.69 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.14 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -29.93 323.67 -7.91 -37.84 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.15 Total: 2.45 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.97 Total: -7.05 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.55 Total: -43.09 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.11 Total: -10.90 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.93 -7.91 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295333824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.195 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds