Wall clock time and date at job start Tue Mar 31 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50706 * 109.47202 * 239.99682 * 2 1 3 5 5 H 1.07998 * 119.99680 * 240.00417 * 4 2 1 6 6 C 1.37872 * 119.99887 * 59.99841 * 4 2 1 7 7 N 1.31516 * 120.00322 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99724 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46784 * 90.00485 * 8 6 4 10 10 H 1.48497 * 109.47152 * 210.00011 * 8 6 4 11 11 H 1.48495 * 109.47375 * 330.00744 * 8 6 4 12 12 N 1.46906 * 109.46745 * 119.99756 * 2 1 3 13 13 C 1.46894 * 110.99936 * 58.95612 * 12 2 1 14 14 C 1.46893 * 110.99743 * 294.99736 * 12 2 1 15 15 C 1.50706 * 109.47004 * 189.99951 * 14 12 2 16 16 C 1.38283 * 119.89555 * 90.00417 * 15 14 12 17 17 C 1.38313 * 120.25586 * 180.30175 * 16 15 14 18 18 C 1.38399 * 119.87324 * 359.44171 * 17 16 15 19 19 C 1.39395 * 119.86537 * 0.55790 * 18 17 16 20 20 C 1.38286 * 119.90243 * 270.02533 * 15 14 12 21 21 N 1.40223 * 119.26931 * 179.70245 * 19 18 17 22 22 C 1.35079 * 118.98852 * 15.42112 * 21 19 18 23 23 O 1.21297 * 120.13257 * 181.72174 * 22 21 19 24 24 C 1.50753 * 119.74049 * 1.70559 * 22 21 19 25 25 O 1.35979 * 120.65809 * 180.31952 * 18 17 16 26 26 H 1.08999 * 109.47273 * 300.00268 * 1 2 3 27 27 H 1.09004 * 109.47019 * 60.00721 * 1 2 3 28 28 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 29 29 H 0.96993 * 120.00276 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47483 * 296.04200 * 13 12 2 31 31 H 1.09006 * 109.47462 * 56.04461 * 13 12 2 32 32 H 1.09004 * 109.46898 * 176.04666 * 13 12 2 33 33 H 1.08998 * 109.47402 * 70.00555 * 14 12 2 34 34 H 1.08995 * 109.47547 * 310.00303 * 14 12 2 35 35 H 1.08002 * 119.86961 * 0.02562 * 16 15 14 36 36 H 1.07995 * 120.06232 * 179.71076 * 17 16 15 37 37 H 1.07996 * 120.09175 * 0.02562 * 20 15 14 38 38 H 0.97002 * 120.49914 * 195.44817 * 21 19 18 39 39 H 1.08996 * 109.44548 * 88.73911 * 24 22 21 40 40 H 1.09000 * 109.44607 * 208.67422 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3226 -1.1198 -4.0079 9 1 1.3448 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3678 -0.5570 3.6006 16 6 3.6110 -0.0744 3.9663 17 6 4.2803 -0.6203 5.0466 18 6 3.6986 -1.6458 5.7714 19 6 2.4454 -2.1323 5.4027 20 6 1.7826 -1.5853 4.3165 21 7 1.8704 -3.1759 6.1420 22 6 2.3768 -3.4726 7.3586 23 8 1.9157 -4.3914 8.0025 24 6 3.5177 -2.6578 7.9128 25 8 4.3395 -2.1898 6.8402 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7095 1.1616 -3.4844 30 1 0.4419 -2.0731 1.3348 31 1 1.8167 -2.5950 0.3319 32 1 1.9616 -2.5867 2.1060 33 1 0.5722 -0.0344 2.5726 34 1 1.9297 1.0871 2.3124 35 1 4.0629 0.7290 3.4035 36 1 5.2531 -0.2441 5.3266 37 1 0.8120 -1.9614 4.0288 38 1 1.1206 -3.6772 5.7850 39 1 3.1206 -1.8055 8.4641 40 1 4.1142 -3.2772 8.5826 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295333824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:35 Heat of formation + Delta-G solvation = -52.162447 kcal Electronic energy + Delta-G solvation = -22899.063971 eV Core-core repulsion = 19485.531644 eV Total energy + Delta-G solvation = -3413.532327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44385 -40.20816 -39.26990 -38.06533 -36.25118 -34.75179 -32.40075 -30.92236 -30.26571 -29.19220 -27.72622 -27.11576 -25.40109 -23.92062 -23.54117 -21.21608 -20.37934 -19.79032 -18.80560 -18.22015 -17.90193 -17.13830 -17.02367 -16.32077 -16.09286 -16.00044 -15.68572 -15.45859 -15.04261 -14.84431 -14.66572 -14.33573 -14.00851 -13.81940 -13.48648 -13.06631 -12.88196 -12.69464 -12.61269 -12.52716 -12.31403 -12.22933 -12.08722 -11.91409 -11.77348 -11.59634 -11.18183 -10.87071 -10.46811 -9.61707 -8.95786 -8.77919 -8.08253 -6.18317 0.05486 0.27331 1.21371 1.43485 1.45487 1.55275 1.69544 2.29158 2.44701 2.67153 2.95356 3.21410 3.53895 3.68658 3.89278 4.02984 4.17636 4.18988 4.31886 4.51637 4.58267 4.60871 4.71183 4.80151 4.84247 4.91693 4.92712 5.02152 5.15739 5.19369 5.22482 5.42917 5.58225 5.65949 5.69584 5.73830 5.76674 5.83216 6.22598 6.27531 6.50712 6.66304 6.76861 6.95597 7.50904 8.97513 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030456 B = 0.003310 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.138159 B = 8458.011722 C = 8603.238817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.012 0.988 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.536 5.536 13 C 0.039 3.961 14 C 0.093 3.907 15 C -0.064 4.064 16 C -0.090 4.090 17 C -0.103 4.103 18 C 0.064 3.936 19 C 0.083 3.917 20 C -0.114 4.114 21 N -0.655 5.655 22 C 0.488 3.512 23 O -0.553 6.553 24 C 0.052 3.948 25 O -0.308 6.308 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.018 0.982 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.136 0.864 38 H 0.419 0.581 39 H 0.124 0.876 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -2.779 18.976 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.108 3.892 3 H 0.030 0.970 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.259 5.259 13 C -0.109 4.109 14 C -0.035 4.035 15 C -0.065 4.065 16 C -0.109 4.109 17 C -0.121 4.121 18 C 0.018 3.982 19 C -0.012 4.012 20 C -0.135 4.135 21 N -0.302 5.302 22 C 0.277 3.723 23 O -0.431 6.431 24 C -0.026 4.026 25 O -0.223 6.223 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.259 0.741 39 H 0.141 0.859 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.520 -3.147 19.305 20.076 hybrid contribution -1.554 -0.566 -1.378 2.153 sum 2.967 -3.713 17.927 18.546 Atomic orbital electron populations 1.22215 1.00380 0.99123 1.00160 1.19082 0.89952 0.93171 0.86969 0.96993 1.21394 1.30425 1.12360 0.90959 0.92609 1.25626 0.95490 0.95782 1.01658 1.69998 1.38002 1.24108 1.23917 0.85611 0.78802 0.78248 0.79284 1.20412 1.21078 1.19487 1.62257 1.59686 1.02507 1.01490 1.22221 0.96827 0.90488 1.01375 1.21000 0.96654 0.97898 0.87953 1.19647 0.95566 0.95920 0.95359 1.21084 0.93516 1.00449 0.95829 1.20703 1.01877 0.93604 0.95961 1.18711 0.91098 0.96777 0.91655 1.17949 0.94149 0.92957 0.96128 1.20570 1.00733 0.97290 0.94945 1.43751 1.35477 1.33561 1.17394 1.22083 0.84852 0.84597 0.80815 1.90794 1.62481 1.30933 1.58873 1.23420 0.90662 0.99709 0.88764 1.86235 1.33706 1.75733 1.26620 0.95244 0.92155 0.95127 0.93047 0.96337 0.92924 0.91454 0.94352 0.90442 0.83949 0.82239 0.84610 0.74117 0.85882 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.36 8.27 71.98 0.60 -6.77 16 2 C 0.22 10.36 2.34 44.17 0.10 10.47 16 3 H 0.01 0.65 8.03 -2.39 -0.02 0.63 16 4 C -0.51 -27.34 7.88 25.60 0.20 -27.14 16 5 H 0.06 2.99 6.77 -2.91 -0.02 2.97 16 6 C 0.01 0.70 5.30 84.65 0.45 1.14 16 7 N -0.92 -51.69 11.32 21.45 0.24 -51.45 16 8 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 N -0.54 -21.19 4.73 -906.03 -4.29 -25.48 16 13 C 0.04 1.43 8.37 127.69 1.07 2.50 16 14 C 0.09 2.94 4.55 85.56 0.39 3.33 16 15 C -0.06 -1.66 4.89 -19.84 -0.10 -1.76 16 16 C -0.09 -2.07 9.69 22.30 0.22 -1.86 16 17 C -0.10 -2.07 10.00 22.33 0.22 -1.85 16 18 C 0.06 1.37 6.44 22.59 0.15 1.51 16 19 C 0.08 1.83 6.55 38.14 0.25 2.08 16 20 C -0.11 -2.67 7.86 22.34 0.18 -2.50 16 21 N -0.66 -13.39 5.47 -302.71 -1.66 -15.04 16 22 C 0.49 10.25 7.94 87.63 0.70 10.95 16 23 O -0.55 -15.03 17.95 -3.08 -0.06 -15.09 16 24 C 0.05 0.74 7.17 71.25 0.51 1.26 16 25 O -0.31 -5.89 10.45 -93.31 -0.98 -6.87 16 26 H 0.03 1.18 6.75 -2.39 -0.02 1.17 16 27 H 0.06 3.15 6.07 -2.38 -0.01 3.13 16 28 H 0.03 1.36 6.48 -2.39 -0.02 1.35 16 29 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.02 0.65 6.51 -2.39 -0.02 0.63 16 31 H 0.05 2.14 6.42 -2.38 -0.02 2.12 16 32 H 0.07 2.12 6.16 -2.38 -0.01 2.10 16 33 H 0.04 1.20 6.88 -2.39 -0.02 1.18 16 34 H 0.08 2.46 7.94 -2.39 -0.02 2.44 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.14 2.92 8.03 -2.91 -0.02 2.90 16 38 H 0.42 7.61 8.89 -92.71 -0.82 6.79 16 39 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -63.89 323.67 0.47 -63.42 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.25 Total: 14.11 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.93 Total: -8.64 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -5.70 Total: -91.97 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.03 Total: -21.96 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -63.89 0.47 -63.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295333824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.255 kcal (2) G-P(sol) polarization free energy of solvation -63.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds