Wall clock time and date at job start Tue Mar 31 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.71058 * 2 1 4 4 C 1.53718 * 109.74747 * 120.76966 * 2 1 3 5 5 O 1.42959 * 109.14470 * 172.16386 * 4 2 1 6 6 C 1.42963 * 114.16791 * 297.28468 * 5 4 2 7 7 C 1.53301 * 109.22217 * 62.58577 * 6 5 4 8 8 N 1.47150 * 108.38343 * 307.69939 * 7 6 5 9 9 C 1.34780 * 120.98443 * 230.51369 * 8 7 6 10 10 O 1.21574 * 120.00002 * 187.27165 * 9 8 7 11 11 N 1.34774 * 119.99511 * 7.27137 * 9 8 7 12 12 C 1.39243 * 119.99908 * 180.98472 * 11 9 8 13 13 C 1.39487 * 119.83106 * 147.00387 * 12 11 9 14 14 C 1.36381 * 120.16536 * 179.97438 * 13 12 11 15 15 C 1.40869 * 119.82687 * 0.02562 * 14 13 12 16 16 C 1.41155 * 120.16221 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00038 * 335.81785 * 16 15 14 18 18 C 1.39892 * 120.00212 * 155.82122 * 16 15 14 19 19 N 1.30878 * 119.99957 * 329.65127 * 18 16 15 20 20 Si 1.86804 * 119.99912 * 149.64254 * 18 16 15 21 21 H 1.48507 * 109.46755 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46724 * 60.00507 * 20 18 16 23 23 H 1.48493 * 109.47306 * 300.00242 * 20 18 16 24 24 C 1.40864 * 119.67416 * 0.25782 * 15 14 13 25 25 C 1.36382 * 119.82948 * 359.48006 * 24 15 14 26 26 H 1.08993 * 109.47007 * 160.44198 * 1 2 3 27 27 H 1.09005 * 109.46350 * 280.43810 * 1 2 3 28 28 H 1.08996 * 109.46952 * 40.43563 * 1 2 3 29 29 H 1.08998 * 109.65440 * 52.19684 * 4 2 1 30 30 H 1.08997 * 109.48518 * 292.02410 * 4 2 1 31 31 H 1.08995 * 109.51366 * 302.66312 * 6 5 4 32 32 H 1.09004 * 109.51024 * 182.50588 * 6 5 4 33 33 H 1.08992 * 109.68157 * 187.97637 * 7 6 5 34 34 H 1.09002 * 109.67936 * 67.41661 * 7 6 5 35 35 H 0.97006 * 120.00460 * 0.98269 * 11 9 8 36 36 H 1.07999 * 119.91585 * 0.02562 * 13 12 11 37 37 H 1.07995 * 120.08288 * 180.02562 * 14 13 12 38 38 H 0.96998 * 119.99992 * 354.98486 * 19 18 16 39 39 H 1.08002 * 120.08520 * 179.72467 * 24 15 14 40 40 H 1.07997 * 119.91303 * 180.25676 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0494 -0.7402 1.2431 5 8 3.4670 -0.8929 1.1397 6 6 3.8907 -1.6868 0.0288 7 6 3.4647 -1.0002 -1.2740 8 7 2.0256 -0.7040 -1.1934 9 6 1.1869 -1.0620 -2.1859 10 8 0.0283 -0.6944 -2.1649 11 7 1.6328 -1.8275 -3.2016 12 6 0.7718 -2.1803 -4.2375 13 6 1.2690 -2.3314 -5.5319 14 6 0.4319 -2.6774 -6.5515 15 6 -0.9380 -2.8817 -6.2947 16 6 -1.8109 -3.2394 -7.3447 17 1 -1.5600 -2.9882 -8.3648 18 6 -3.0009 -3.9191 -7.0643 19 7 -3.0670 -4.7258 -6.0358 20 14 -4.4958 -3.6753 -8.1577 21 1 -5.6205 -4.5014 -7.6497 22 1 -4.1661 -4.0870 -9.5459 23 1 -4.8892 -2.2435 -8.1461 24 6 -1.4336 -2.7214 -4.9859 25 6 -0.5834 -2.3804 -3.9755 26 1 -0.3633 -0.9683 -0.3440 27 1 -0.3632 0.1862 1.0108 28 1 -0.3633 0.7822 -0.6665 29 1 1.5810 -1.7223 1.3073 30 1 1.8095 -0.1634 2.1363 31 1 3.4291 -2.6724 0.0886 32 1 4.9756 -1.7903 0.0480 33 1 3.6565 -1.6628 -2.1178 34 1 4.0238 -0.0730 -1.4000 35 1 2.5536 -2.1326 -3.2111 36 1 2.3196 -2.1748 -5.7271 37 1 0.8183 -2.7944 -7.5532 38 1 -2.2719 -4.9088 -5.5111 39 1 -2.4836 -2.8720 -4.7823 40 1 -0.9612 -2.2612 -2.9708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296370287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:48 Heat of formation + Delta-G solvation = -31.396133 kcal Electronic energy + Delta-G solvation = -23223.870310 eV Core-core repulsion = 19811.238479 eV Total energy + Delta-G solvation = -3412.631832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75957 -38.81574 -37.47155 -35.09403 -34.68489 -33.47033 -32.19772 -29.64256 -29.11418 -28.14242 -26.43776 -24.80007 -23.16948 -22.44810 -21.40492 -20.68267 -19.33122 -17.93902 -17.87573 -16.83147 -16.34315 -16.14017 -15.40453 -15.05373 -14.93255 -14.50590 -14.19730 -14.03004 -13.78851 -13.30275 -12.88751 -12.51742 -12.40416 -12.20975 -12.03339 -11.93593 -11.71626 -11.51632 -11.25042 -11.11641 -11.04736 -10.91143 -10.40596 -10.35839 -9.82542 -9.71142 -9.26804 -8.86589 -8.81322 -8.48803 -7.71512 -7.28220 -7.04474 -4.34494 2.58994 2.75926 2.94081 3.16017 3.23785 3.37923 3.54228 3.61181 4.02688 4.12193 4.47939 4.56267 4.72880 4.78531 4.86821 4.99581 5.16265 5.27915 5.43217 5.49835 5.53612 5.59800 5.74507 6.02751 6.17149 6.26600 6.31455 6.61356 6.72686 6.79391 6.83244 6.94754 7.09646 7.16327 7.42389 7.65535 7.76879 7.85594 7.86547 8.21197 8.32574 8.36548 8.76058 8.88149 9.03571 10.02072 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.003553 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.399504 B = 7877.698470 C = 8368.698328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.131 3.869 3 H 0.074 0.926 4 C 0.050 3.950 5 O -0.381 6.381 6 C 0.047 3.953 7 C 0.078 3.922 8 N -0.638 5.638 9 C 0.698 3.302 10 O -0.565 6.565 11 N -0.665 5.665 12 C -0.005 4.005 13 C -0.094 4.094 14 C -0.220 4.220 15 C 0.093 3.907 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.042 3.958 19 N -0.787 5.787 20 Si 1.062 2.938 21 H -0.274 1.274 22 H -0.276 1.276 23 H -0.274 1.274 24 C -0.212 4.212 25 C -0.066 4.066 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.387 0.613 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.299 0.701 39 H 0.104 0.896 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.919 4.615 10.901 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 H 0.092 0.908 4 C -0.028 4.028 5 O -0.299 6.299 6 C -0.030 4.030 7 C -0.046 4.046 8 N -0.378 5.378 9 C 0.401 3.599 10 O -0.442 6.442 11 N -0.312 5.312 12 C -0.098 4.098 13 C -0.115 4.115 14 C -0.240 4.240 15 C 0.090 3.910 16 C -0.551 4.551 17 H 0.094 0.906 18 C -0.181 4.181 19 N -0.409 5.409 20 Si 0.886 3.114 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.232 4.232 25 C -0.086 4.086 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.223 0.777 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.590 4.502 10.917 14.602 hybrid contribution 2.201 0.203 -0.073 2.212 sum 10.791 4.705 10.844 16.005 Atomic orbital electron populations 1.22127 0.91697 1.05881 0.99968 1.21816 0.96729 0.95267 0.83491 0.90816 1.23241 0.81178 1.00480 0.97854 1.87937 1.22268 1.72224 1.47506 1.22981 1.00675 0.93804 0.85585 1.22287 0.82229 1.01203 0.98911 1.47398 1.06851 1.63167 1.20417 1.15906 0.84737 0.79302 0.79953 1.90932 1.16381 1.59708 1.77177 1.42326 1.13893 1.52312 1.22703 1.16880 0.90488 1.16378 0.86049 1.20033 0.97639 1.02364 0.91439 1.20448 0.93416 1.13036 0.97092 1.17686 0.91332 0.89481 0.92533 1.20494 1.04560 1.34411 0.95606 0.90606 1.27017 1.02114 0.91444 0.97553 1.70484 1.35349 1.21803 1.13239 0.83685 0.74616 0.77774 0.75357 1.19865 1.20132 1.19900 1.20779 0.98499 1.10417 0.93513 1.20481 0.91941 0.97315 0.98837 0.89913 0.93752 0.90903 0.92466 0.87754 0.92502 0.87704 0.89545 0.90625 0.77736 0.89258 0.88643 0.88813 0.87748 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.80 37.16 0.29 -1.63 16 2 C 0.13 1.61 3.70 -67.20 -0.25 1.37 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.05 0.51 6.23 37.53 0.23 0.75 16 5 O -0.38 -4.13 10.74 -35.23 -0.38 -4.51 16 6 C 0.05 0.42 6.99 37.31 0.26 0.68 16 7 C 0.08 0.78 6.65 -3.53 -0.02 0.76 16 8 N -0.64 -8.78 3.01 -170.18 -0.51 -9.30 16 9 C 0.70 12.59 7.81 -86.92 -0.68 11.91 16 10 O -0.56 -12.10 9.61 5.30 0.05 -12.05 16 11 N -0.66 -11.89 5.23 -14.10 -0.07 -11.96 16 12 C -0.01 -0.12 6.33 -83.57 -0.53 -0.65 16 13 C -0.09 -2.07 9.89 -39.79 -0.39 -2.46 16 14 C -0.22 -5.36 9.74 -39.26 -0.38 -5.74 16 15 C 0.09 2.48 5.29 -106.80 -0.56 1.92 16 16 C -0.52 -14.00 8.92 -37.86 -0.34 -14.34 16 17 H 0.08 1.97 8.00 -52.48 -0.42 1.55 16 18 C 0.04 1.07 4.80 -17.34 -0.08 0.99 16 19 N -0.79 -21.00 12.37 55.54 0.69 -20.31 16 20 Si 1.06 21.74 30.02 -169.99 -5.10 16.64 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 C -0.21 -5.64 8.04 -39.26 -0.32 -5.95 16 25 C -0.07 -1.62 8.60 -39.79 -0.34 -1.97 16 26 H 0.08 1.38 6.13 -51.93 -0.32 1.06 16 27 H 0.04 0.48 8.01 -51.93 -0.42 0.06 16 28 H 0.07 1.15 7.35 -51.93 -0.38 0.77 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.76 5.64 -51.93 -0.29 0.47 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 5.51 6.33 -40.82 -0.26 5.25 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.30 8.19 7.03 -40.82 -0.29 7.90 16 39 H 0.10 2.88 6.61 -52.49 -0.35 2.53 16 40 H 0.11 2.72 6.15 -52.49 -0.32 2.40 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -30.65 319.33 -8.86 -39.51 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.22 Total: 11.54 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -3.12 Total: -14.37 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.10 Total: -41.57 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.33 Total: -16.55 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.10 Total: 16.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.65 -8.86 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296370287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.113 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds