Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.71058 * 2 1 4 4 C 1.53718 * 109.74747 * 120.76966 * 2 1 3 5 5 O 1.42959 * 109.14470 * 172.16386 * 4 2 1 6 6 C 1.42963 * 114.16791 * 297.28468 * 5 4 2 7 7 C 1.53301 * 109.22217 * 62.58577 * 6 5 4 8 8 N 1.47150 * 108.38343 * 307.69939 * 7 6 5 9 9 C 1.34780 * 120.98443 * 230.51369 * 8 7 6 10 10 O 1.21574 * 120.00002 * 187.27165 * 9 8 7 11 11 N 1.34774 * 119.99511 * 7.27137 * 9 8 7 12 12 C 1.39243 * 119.99908 * 180.98472 * 11 9 8 13 13 C 1.39487 * 119.83106 * 147.00387 * 12 11 9 14 14 C 1.36381 * 120.16536 * 179.97438 * 13 12 11 15 15 C 1.40869 * 119.82687 * 0.02562 * 14 13 12 16 16 C 1.41155 * 120.16221 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00038 * 335.81785 * 16 15 14 18 18 C 1.39892 * 120.00212 * 155.82122 * 16 15 14 19 19 N 1.30878 * 119.99957 * 329.65127 * 18 16 15 20 20 Si 1.86804 * 119.99912 * 149.64254 * 18 16 15 21 21 H 1.48507 * 109.46755 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46724 * 60.00507 * 20 18 16 23 23 H 1.48493 * 109.47306 * 300.00242 * 20 18 16 24 24 C 1.40864 * 119.67416 * 0.25782 * 15 14 13 25 25 C 1.36382 * 119.82948 * 359.48006 * 24 15 14 26 26 H 1.08993 * 109.47007 * 160.44198 * 1 2 3 27 27 H 1.09005 * 109.46350 * 280.43810 * 1 2 3 28 28 H 1.08996 * 109.46952 * 40.43563 * 1 2 3 29 29 H 1.08998 * 109.65440 * 52.19684 * 4 2 1 30 30 H 1.08997 * 109.48518 * 292.02410 * 4 2 1 31 31 H 1.08995 * 109.51366 * 302.66312 * 6 5 4 32 32 H 1.09004 * 109.51024 * 182.50588 * 6 5 4 33 33 H 1.08992 * 109.68157 * 187.97637 * 7 6 5 34 34 H 1.09002 * 109.67936 * 67.41661 * 7 6 5 35 35 H 0.97006 * 120.00460 * 0.98269 * 11 9 8 36 36 H 1.07999 * 119.91585 * 0.02562 * 13 12 11 37 37 H 1.07995 * 120.08288 * 180.02562 * 14 13 12 38 38 H 0.96998 * 119.99992 * 354.98486 * 19 18 16 39 39 H 1.08002 * 120.08520 * 179.72467 * 24 15 14 40 40 H 1.07997 * 119.91303 * 180.25676 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0494 -0.7402 1.2431 5 8 3.4670 -0.8929 1.1397 6 6 3.8907 -1.6868 0.0288 7 6 3.4647 -1.0002 -1.2740 8 7 2.0256 -0.7040 -1.1934 9 6 1.1869 -1.0620 -2.1859 10 8 0.0283 -0.6944 -2.1649 11 7 1.6328 -1.8275 -3.2016 12 6 0.7718 -2.1803 -4.2375 13 6 1.2690 -2.3314 -5.5319 14 6 0.4319 -2.6774 -6.5515 15 6 -0.9380 -2.8817 -6.2947 16 6 -1.8109 -3.2394 -7.3447 17 1 -1.5600 -2.9882 -8.3648 18 6 -3.0009 -3.9191 -7.0643 19 7 -3.0670 -4.7258 -6.0358 20 14 -4.4958 -3.6753 -8.1577 21 1 -5.6205 -4.5014 -7.6497 22 1 -4.1661 -4.0870 -9.5459 23 1 -4.8892 -2.2435 -8.1461 24 6 -1.4336 -2.7214 -4.9859 25 6 -0.5834 -2.3804 -3.9755 26 1 -0.3633 -0.9683 -0.3440 27 1 -0.3632 0.1862 1.0108 28 1 -0.3633 0.7822 -0.6665 29 1 1.5810 -1.7223 1.3073 30 1 1.8095 -0.1634 2.1363 31 1 3.4291 -2.6724 0.0886 32 1 4.9756 -1.7903 0.0480 33 1 3.6565 -1.6628 -2.1178 34 1 4.0238 -0.0730 -1.4000 35 1 2.5536 -2.1326 -3.2111 36 1 2.3196 -2.1748 -5.7271 37 1 0.8183 -2.7944 -7.5532 38 1 -2.2719 -4.9088 -5.5111 39 1 -2.4836 -2.8720 -4.7823 40 1 -0.9612 -2.2612 -2.9708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296370287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -50.711825 kcal Electronic energy + Delta-G solvation = -23224.707901 eV Core-core repulsion = 19811.238479 eV Total energy + Delta-G solvation = -3413.469423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02788 -40.12416 -39.05370 -36.67438 -35.89577 -35.07642 -33.42113 -31.56252 -30.67173 -29.43738 -27.41413 -26.59842 -24.10410 -23.84699 -23.17983 -22.29582 -20.72357 -19.87486 -19.12250 -18.21948 -17.34064 -17.20841 -16.68281 -16.36050 -16.10493 -15.86398 -15.76651 -15.45159 -15.25362 -14.76310 -14.39214 -14.23608 -13.81648 -13.75549 -13.51415 -13.32981 -12.99090 -12.87111 -12.71480 -12.57841 -12.20852 -11.99296 -11.89428 -11.65024 -11.56710 -11.26412 -11.00788 -10.70495 -10.35063 -9.65298 -9.59804 -9.25827 -8.89383 -6.35378 0.79646 0.97575 1.49099 1.50376 1.61820 1.79649 2.11621 2.32332 2.67805 2.80783 2.88004 3.55738 3.63153 3.86040 3.96619 4.03131 4.16343 4.24899 4.28842 4.37477 4.50049 4.58900 4.71408 4.76121 4.80527 4.81308 4.96680 5.06054 5.07508 5.26516 5.28360 5.42733 5.54604 5.61789 5.75586 5.82845 5.97913 6.01685 6.05182 6.25290 6.39445 6.79130 6.94258 6.94928 7.58651 7.99973 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032385 B = 0.003553 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.399504 B = 7877.698470 C = 8368.698328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.126 3.874 3 H 0.085 0.915 4 C 0.058 3.942 5 O -0.389 6.389 6 C 0.047 3.953 7 C 0.071 3.929 8 N -0.632 5.632 9 C 0.692 3.308 10 O -0.605 6.605 11 N -0.658 5.658 12 C 0.016 3.984 13 C -0.089 4.089 14 C -0.227 4.227 15 C 0.064 3.936 16 C -0.559 4.559 17 H 0.076 0.924 18 C 0.006 3.994 19 N -0.809 5.809 20 Si 1.113 2.887 21 H -0.272 1.272 22 H -0.252 1.252 23 H -0.268 1.268 24 C -0.231 4.231 25 C -0.080 4.080 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.053 0.947 32 H 0.137 0.863 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.409 0.591 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.282 0.718 39 H 0.080 0.920 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.508 5.391 11.568 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.023 3.977 3 H 0.103 0.897 4 C -0.020 4.020 5 O -0.307 6.307 6 C -0.030 4.030 7 C -0.051 4.051 8 N -0.371 5.371 9 C 0.395 3.605 10 O -0.485 6.485 11 N -0.308 5.308 12 C -0.078 4.078 13 C -0.109 4.109 14 C -0.247 4.247 15 C 0.061 3.939 16 C -0.587 4.587 17 H 0.094 0.906 18 C -0.211 4.211 19 N -0.431 5.431 20 Si 0.930 3.070 21 H -0.196 1.196 22 H -0.176 1.176 23 H -0.193 1.193 24 C -0.251 4.251 25 C -0.100 4.100 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.248 0.752 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.273 5.281 11.624 17.032 hybrid contribution 1.601 0.061 -0.101 1.605 sum 12.874 5.341 11.523 18.084 Atomic orbital electron populations 1.21934 0.93142 1.02879 1.00864 1.22007 0.95609 0.96191 0.83885 0.89664 1.23224 0.81072 1.00241 0.97439 1.87941 1.22128 1.72478 1.48155 1.23150 1.02512 0.93079 0.84258 1.22621 0.79636 1.02533 1.00327 1.47469 1.08143 1.62092 1.19417 1.16131 0.84671 0.79192 0.80487 1.90935 1.18474 1.60977 1.78101 1.42118 1.14327 1.52563 1.21807 1.16954 0.89991 1.13370 0.87499 1.20389 0.99595 1.00610 0.90287 1.20724 0.92758 1.12643 0.98566 1.17991 0.92838 0.90481 0.92555 1.20694 1.06127 1.36188 0.95670 0.90601 1.28429 1.04668 0.90085 0.97935 1.70599 1.34399 1.23626 1.14527 0.83067 0.71239 0.77942 0.74721 1.19614 1.17602 1.19291 1.20656 0.97746 1.12183 0.94487 1.20520 0.93437 0.98061 0.98003 0.93260 0.90728 0.93592 0.93083 0.85238 0.92857 0.84533 0.88174 0.89056 0.75210 0.84690 0.87320 0.90663 0.90220 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 7.80 71.98 0.56 -3.02 16 2 C 0.13 2.88 3.70 45.11 0.17 3.05 16 3 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.06 1.03 6.23 72.22 0.45 1.48 16 5 O -0.39 -7.04 10.74 -148.98 -1.60 -8.64 16 6 C 0.05 0.67 6.99 72.08 0.50 1.17 16 7 C 0.07 1.17 6.65 86.36 0.57 1.75 16 8 N -0.63 -16.14 3.01 -810.60 -2.44 -18.59 16 9 C 0.69 24.38 7.81 179.05 1.40 25.78 16 10 O -0.61 -26.49 9.61 -3.95 -0.04 -26.53 16 11 N -0.66 -22.30 5.23 -316.79 -1.66 -23.96 16 12 C 0.02 0.69 6.33 38.56 0.24 0.93 16 13 C -0.09 -3.70 9.89 22.14 0.22 -3.48 16 14 C -0.23 -10.96 9.74 22.48 0.22 -10.74 16 15 C 0.06 3.55 5.29 -21.28 -0.11 3.43 16 16 C -0.56 -30.90 8.92 23.39 0.21 -30.69 16 17 H 0.08 4.04 8.00 -2.91 -0.02 4.02 16 18 C 0.01 0.32 4.80 85.24 0.41 0.73 16 19 N -0.81 -45.25 12.37 21.82 0.27 -44.98 16 20 Si 1.11 44.48 30.02 68.60 2.06 46.54 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 22 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 24 C -0.23 -12.88 8.04 22.48 0.18 -12.70 16 25 C -0.08 -4.08 8.60 22.13 0.19 -3.89 16 26 H 0.05 1.69 6.13 -2.39 -0.01 1.68 16 27 H 0.07 1.53 8.01 -2.38 -0.02 1.51 16 28 H 0.04 1.48 7.35 -2.39 -0.02 1.46 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.10 1.35 5.64 -2.39 -0.01 1.34 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.41 10.25 6.33 -92.70 -0.59 9.67 16 36 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.28 16.43 7.03 -92.71 -0.65 15.77 16 39 H 0.08 4.73 6.61 -2.91 -0.02 4.71 16 40 H 0.10 5.27 6.15 -2.91 -0.02 5.25 16 Total: -1.00 -70.51 319.33 2.40 -68.12 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.59 Total: 34.24 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 5.21 Total: -26.21 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -3.83 Total: -87.52 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.64 Total: -35.17 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.06 Total: 46.54 kcal Total: -70.51 2.40 -68.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296370287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.405 kcal (2) G-P(sol) polarization free energy of solvation -70.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds