Wall clock time and date at job start Tue Mar 31 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.55327 * 2 1 4 4 C 1.53292 * 109.51220 * 239.87340 * 2 1 3 5 5 N 1.47153 * 108.38572 * 187.77527 * 4 2 1 6 6 C 1.34780 * 120.98170 * 230.51656 * 5 4 2 7 7 O 1.21584 * 119.99925 * 5.45032 * 6 5 4 8 8 N 1.34775 * 119.99919 * 185.45981 * 6 5 4 9 9 C 1.39244 * 119.99728 * 184.57459 * 8 6 5 10 10 C 1.39482 * 119.83205 * 144.45835 * 9 8 6 11 11 C 1.36370 * 120.16746 * 179.75725 * 10 9 8 12 12 C 1.40864 * 119.83099 * 0.51590 * 11 10 9 13 13 C 1.41157 * 120.16725 * 179.75970 * 12 11 10 14 14 H 1.08002 * 119.99872 * 214.77921 * 13 12 11 15 15 C 1.39891 * 119.99935 * 34.78334 * 13 12 11 16 16 N 1.30876 * 119.99992 * 355.51446 * 15 13 12 17 17 Si 1.86796 * 120.00126 * 175.51117 * 15 13 12 18 18 H 1.48503 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47409 * 119.99896 * 17 15 13 20 20 H 1.48506 * 109.47099 * 240.00171 * 17 15 13 21 21 C 1.40871 * 119.67138 * 359.73723 * 12 11 10 22 22 C 1.36371 * 119.82596 * 0.02562 * 21 12 11 23 23 C 1.47155 * 118.03882 * 50.78093 * 5 4 2 24 24 C 1.53716 * 108.16108 * 309.16393 * 23 5 4 25 25 O 1.42962 * 109.51417 * 120.12638 * 2 1 3 26 26 H 1.09003 * 109.46873 * 180.13140 * 1 2 3 27 27 H 1.08990 * 109.47096 * 300.12799 * 1 2 3 28 28 H 1.08998 * 109.47070 * 60.13258 * 1 2 3 29 29 H 1.09001 * 109.68723 * 68.04553 * 4 2 1 30 30 H 1.09001 * 109.68413 * 307.48978 * 4 2 1 31 31 H 0.96998 * 120.00250 * 4.85018 * 8 6 5 32 32 H 1.08006 * 119.91673 * 359.97438 * 10 9 8 33 33 H 1.08001 * 120.08996 * 180.25745 * 11 10 9 34 34 H 0.97008 * 120.00336 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.08785 * 179.97438 * 21 12 11 36 36 H 1.08004 * 119.91663 * 180.02562 * 22 21 12 37 37 H 1.08997 * 109.67700 * 68.93805 * 23 5 4 38 38 H 1.09001 * 109.68140 * 189.49460 * 23 5 4 39 39 H 1.09004 * 109.65673 * 292.57167 * 24 23 5 40 40 H 1.08993 * 109.48446 * 172.39749 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 -1.2497 5 7 3.5012 -0.8762 -1.1336 6 6 4.3193 -0.5042 -2.1380 7 8 3.8644 0.0547 -3.1173 8 7 5.6416 -0.7518 -2.0568 9 6 6.4997 -0.2837 -3.0486 10 6 7.7822 0.1473 -2.7097 11 6 8.6299 0.6023 -3.6762 12 6 8.2036 0.6466 -5.0180 13 6 9.0734 1.1211 -6.0234 14 1 8.6783 1.6757 -6.8617 15 6 10.4472 0.8728 -5.9340 16 7 10.9372 0.2780 -4.8762 17 14 11.5823 1.3902 -7.3244 18 1 10.7866 2.0376 -8.3982 19 1 12.5915 2.3498 -6.8086 20 1 12.2712 0.1941 -7.8722 21 6 6.9049 0.2146 -5.3517 22 6 6.0702 -0.2425 -4.3750 23 6 4.0404 -1.4510 0.1092 24 6 3.4313 -0.6854 1.2948 25 8 2.0076 -0.6763 1.1655 26 1 -0.3633 -1.0277 0.0024 27 1 -0.3633 0.5158 0.8888 28 1 -0.3633 0.5118 -0.8912 29 1 1.8030 -0.1400 -2.1377 30 1 1.5759 -1.7080 -1.3207 31 1 5.9951 -1.2594 -1.3097 32 1 8.1060 0.1173 -1.6798 33 1 9.6242 0.9319 -3.4130 34 1 11.8899 0.1062 -4.8140 35 1 6.5709 0.2460 -6.3783 36 1 5.0744 -0.5745 -4.6292 37 1 3.7719 -2.5054 0.1726 38 1 5.1253 -1.3464 0.1215 39 1 3.8030 0.3393 1.2995 40 1 3.7091 -1.1777 2.2267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298487924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:35 Heat of formation + Delta-G solvation = -39.794307 kcal Electronic energy + Delta-G solvation = -22754.082945 eV Core-core repulsion = 19341.086941 eV Total energy + Delta-G solvation = -3412.996004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54343 -38.88541 -37.28468 -34.72750 -34.55140 -33.22936 -32.64540 -29.57455 -29.06066 -28.73336 -26.56959 -24.58370 -23.60120 -21.86815 -21.21248 -20.67363 -19.31531 -18.18243 -17.27167 -16.89909 -16.39105 -15.69254 -15.39447 -15.25481 -15.11252 -14.74257 -14.05852 -13.89854 -13.66440 -13.04223 -12.85745 -12.69384 -12.50623 -12.28350 -12.08043 -11.90724 -11.71445 -11.45823 -11.37480 -11.16305 -10.93901 -10.80993 -10.51303 -10.27189 -10.09706 -9.83572 -9.44130 -9.16721 -8.78814 -8.52965 -7.52848 -6.84662 -6.60521 -4.31760 2.60183 2.77355 3.09657 3.10395 3.14531 3.17502 3.46898 3.60837 3.99568 4.16386 4.48329 4.69513 4.74859 4.78998 4.86866 4.92475 5.07282 5.31972 5.38287 5.49380 5.56495 5.60607 5.67559 5.75016 5.90194 6.18452 6.33154 6.44510 6.76382 6.83923 6.90825 7.04388 7.14440 7.25944 7.37522 7.67079 7.85569 7.95277 8.10801 8.31648 8.39590 8.65829 8.90704 8.95337 9.06401 10.31089 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044296 B = 0.003064 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.965748 B = 9135.428996 C = 9561.063175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 H 0.064 0.936 4 C 0.103 3.897 5 N -0.640 5.640 6 C 0.700 3.300 7 O -0.575 6.575 8 N -0.666 5.666 9 C 0.020 3.980 10 C -0.122 4.122 11 C -0.140 4.140 12 C 0.099 3.901 13 C -0.461 4.461 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.814 5.814 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.204 4.204 22 C -0.086 4.086 23 C 0.076 3.924 24 C 0.050 3.950 25 O -0.379 6.379 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.391 0.609 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.276 0.724 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 -3.316 12.001 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.021 4.021 5 N -0.380 5.380 6 C 0.403 3.597 7 O -0.452 6.452 8 N -0.313 5.313 9 C -0.072 4.072 10 C -0.143 4.143 11 C -0.160 4.160 12 C 0.096 3.904 13 C -0.492 4.492 14 H 0.094 0.906 15 C -0.145 4.145 16 N -0.442 5.442 17 Si 0.740 3.260 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.224 4.224 22 C -0.106 4.106 23 C -0.048 4.048 24 C -0.027 4.027 25 O -0.298 6.298 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.351 -3.050 11.490 17.142 hybrid contribution 1.083 -0.121 -0.269 1.122 sum -11.268 -3.171 11.221 16.216 Atomic orbital electron populations 1.21718 0.92242 1.03157 1.02871 1.22534 0.95446 0.95586 0.85060 0.91815 1.22134 0.79008 1.01386 0.99521 1.47317 1.06402 1.68122 1.16117 1.15894 0.81545 0.79474 0.82793 1.90891 1.74974 1.47734 1.31568 1.42271 1.04893 1.57158 1.26964 1.17094 0.90942 1.11999 0.87169 1.20300 0.93473 1.02475 0.98014 1.21180 0.99826 1.03044 0.91971 1.17725 0.90967 0.89170 0.92510 1.19525 0.91241 1.31521 1.06947 0.90606 1.25862 0.98839 0.93194 0.96598 1.69775 1.14418 1.33143 1.26881 0.86158 0.79728 0.78885 0.81252 1.18612 1.20036 1.20033 1.20830 0.96476 1.07844 0.97239 1.20438 0.98701 1.00347 0.91100 1.22388 0.99313 0.98325 0.84761 1.23011 0.81418 1.00288 0.98018 1.87932 1.20743 1.77553 1.43592 0.91587 0.91532 0.90607 0.87894 0.91248 0.77394 0.89240 0.85016 0.91291 0.88610 0.87345 0.90634 0.89384 0.92501 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.57 37.16 0.36 -0.77 16 2 C 0.07 0.75 3.40 -26.58 -0.09 0.66 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.10 1.25 5.94 -3.53 -0.02 1.23 16 5 N -0.64 -8.88 3.01 -177.74 -0.54 -9.41 16 6 C 0.70 12.88 8.15 -86.92 -0.71 12.18 16 7 O -0.57 -12.80 13.22 5.29 0.07 -12.73 16 8 N -0.67 -12.12 5.17 -14.10 -0.07 -12.20 16 9 C 0.02 0.46 6.31 -83.57 -0.53 -0.06 16 10 C -0.12 -2.80 9.90 -39.79 -0.39 -3.20 16 11 C -0.14 -3.62 8.61 -39.26 -0.34 -3.96 16 12 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 13 C -0.46 -12.42 9.02 -37.86 -0.34 -12.76 16 14 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 15 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 16 N -0.81 -21.09 10.59 55.54 0.59 -20.50 16 17 Si 0.91 19.09 29.56 -169.99 -5.03 14.06 16 18 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 C -0.20 -5.24 9.74 -39.26 -0.38 -5.62 16 22 C -0.09 -2.10 8.61 -39.79 -0.34 -2.44 16 23 C 0.08 0.77 6.55 -3.31 -0.02 0.75 16 24 C 0.05 0.46 7.00 37.53 0.26 0.72 16 25 O -0.38 -4.12 10.38 -35.23 -0.37 -4.49 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.39 7.06 -51.93 -0.37 1.03 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.39 5.70 6.48 -40.82 -0.26 5.44 16 32 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 34 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 35 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 36 H 0.11 2.65 6.21 -52.48 -0.33 2.33 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.80 5.88 -51.93 -0.31 0.49 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -31.34 326.19 -9.02 -40.36 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.36 Total: 9.52 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.24 Total: -9.53 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.02 Total: -42.11 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.30 Total: -17.22 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.34 -9.02 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298487924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.564 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds