Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.55327 * 2 1 4 4 C 1.53292 * 109.51220 * 239.87340 * 2 1 3 5 5 N 1.47153 * 108.38572 * 187.77527 * 4 2 1 6 6 C 1.34780 * 120.98170 * 230.51656 * 5 4 2 7 7 O 1.21584 * 119.99925 * 5.45032 * 6 5 4 8 8 N 1.34775 * 119.99919 * 185.45981 * 6 5 4 9 9 C 1.39244 * 119.99728 * 184.57459 * 8 6 5 10 10 C 1.39482 * 119.83205 * 144.45835 * 9 8 6 11 11 C 1.36370 * 120.16746 * 179.75725 * 10 9 8 12 12 C 1.40864 * 119.83099 * 0.51590 * 11 10 9 13 13 C 1.41157 * 120.16725 * 179.75970 * 12 11 10 14 14 H 1.08002 * 119.99872 * 214.77921 * 13 12 11 15 15 C 1.39891 * 119.99935 * 34.78334 * 13 12 11 16 16 N 1.30876 * 119.99992 * 355.51446 * 15 13 12 17 17 Si 1.86796 * 120.00126 * 175.51117 * 15 13 12 18 18 H 1.48503 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47409 * 119.99896 * 17 15 13 20 20 H 1.48506 * 109.47099 * 240.00171 * 17 15 13 21 21 C 1.40871 * 119.67138 * 359.73723 * 12 11 10 22 22 C 1.36371 * 119.82596 * 0.02562 * 21 12 11 23 23 C 1.47155 * 118.03882 * 50.78093 * 5 4 2 24 24 C 1.53716 * 108.16108 * 309.16393 * 23 5 4 25 25 O 1.42962 * 109.51417 * 120.12638 * 2 1 3 26 26 H 1.09003 * 109.46873 * 180.13140 * 1 2 3 27 27 H 1.08990 * 109.47096 * 300.12799 * 1 2 3 28 28 H 1.08998 * 109.47070 * 60.13258 * 1 2 3 29 29 H 1.09001 * 109.68723 * 68.04553 * 4 2 1 30 30 H 1.09001 * 109.68413 * 307.48978 * 4 2 1 31 31 H 0.96998 * 120.00250 * 4.85018 * 8 6 5 32 32 H 1.08006 * 119.91673 * 359.97438 * 10 9 8 33 33 H 1.08001 * 120.08996 * 180.25745 * 11 10 9 34 34 H 0.97008 * 120.00336 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.08785 * 179.97438 * 21 12 11 36 36 H 1.08004 * 119.91663 * 180.02562 * 22 21 12 37 37 H 1.08997 * 109.67700 * 68.93805 * 23 5 4 38 38 H 1.09001 * 109.68140 * 189.49460 * 23 5 4 39 39 H 1.09004 * 109.65673 * 292.57167 * 24 23 5 40 40 H 1.08993 * 109.48446 * 172.39749 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 -1.2497 5 7 3.5012 -0.8762 -1.1336 6 6 4.3193 -0.5042 -2.1380 7 8 3.8644 0.0547 -3.1173 8 7 5.6416 -0.7518 -2.0568 9 6 6.4997 -0.2837 -3.0486 10 6 7.7822 0.1473 -2.7097 11 6 8.6299 0.6023 -3.6762 12 6 8.2036 0.6466 -5.0180 13 6 9.0734 1.1211 -6.0234 14 1 8.6783 1.6757 -6.8617 15 6 10.4472 0.8728 -5.9340 16 7 10.9372 0.2780 -4.8762 17 14 11.5823 1.3902 -7.3244 18 1 10.7866 2.0376 -8.3982 19 1 12.5915 2.3498 -6.8086 20 1 12.2712 0.1941 -7.8722 21 6 6.9049 0.2146 -5.3517 22 6 6.0702 -0.2425 -4.3750 23 6 4.0404 -1.4510 0.1092 24 6 3.4313 -0.6854 1.2948 25 8 2.0076 -0.6763 1.1655 26 1 -0.3633 -1.0277 0.0024 27 1 -0.3633 0.5158 0.8888 28 1 -0.3633 0.5118 -0.8912 29 1 1.8030 -0.1400 -2.1377 30 1 1.5759 -1.7080 -1.3207 31 1 5.9951 -1.2594 -1.3097 32 1 8.1060 0.1173 -1.6798 33 1 9.6242 0.9319 -3.4130 34 1 11.8899 0.1062 -4.8140 35 1 6.5709 0.2460 -6.3783 36 1 5.0744 -0.5745 -4.6292 37 1 3.7719 -2.5054 0.1726 38 1 5.1253 -1.3464 0.1215 39 1 3.8030 0.3393 1.2995 40 1 3.7091 -1.1777 2.2267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298487924.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = -59.130930 kcal Electronic energy + Delta-G solvation = -22754.921444 eV Core-core repulsion = 19341.086941 eV Total energy + Delta-G solvation = -3413.834503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83384 -40.11365 -38.97072 -36.25391 -35.92186 -34.68208 -33.79650 -31.48568 -30.77862 -29.71090 -27.81165 -26.25047 -24.47644 -23.42028 -22.79647 -22.12890 -20.70991 -19.53480 -19.18596 -18.18801 -17.45883 -17.05192 -16.81179 -16.57191 -16.21371 -15.74918 -15.71235 -15.33378 -15.04231 -14.54401 -14.40098 -14.03547 -13.74254 -13.63239 -13.31312 -13.16681 -13.00034 -12.84622 -12.73311 -12.59689 -12.36017 -12.20020 -11.92711 -11.70836 -11.61584 -11.24107 -11.13916 -10.98105 -10.56190 -9.64358 -9.46988 -8.71421 -8.50349 -6.31654 0.82408 1.14021 1.40531 1.44942 1.52988 1.55699 2.09250 2.25452 2.72226 2.80922 2.90520 3.64758 3.68336 3.89425 3.98780 4.02516 4.15495 4.32413 4.38286 4.47041 4.53705 4.66904 4.71126 4.81735 4.88904 4.92217 4.99454 5.09984 5.14109 5.24742 5.28818 5.41653 5.43211 5.65814 5.75751 6.01521 6.06445 6.12137 6.17672 6.39380 6.68487 6.91650 6.97926 7.01196 7.53304 8.43418 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044296 B = 0.003064 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.965748 B = 9135.428996 C = 9561.063175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.077 3.923 3 H 0.052 0.948 4 C 0.099 3.901 5 N -0.633 5.633 6 C 0.697 3.303 7 O -0.620 6.620 8 N -0.658 5.658 9 C 0.037 3.963 10 C -0.118 4.118 11 C -0.157 4.157 12 C 0.068 3.932 13 C -0.499 4.499 14 H 0.069 0.931 15 C 0.030 3.970 16 N -0.839 5.839 17 Si 0.988 3.012 18 H -0.263 1.263 19 H -0.263 1.263 20 H -0.267 1.267 21 C -0.220 4.220 22 C -0.097 4.097 23 C 0.070 3.930 24 C 0.050 3.950 25 O -0.386 6.386 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.285 0.715 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 -4.116 13.867 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.070 0.930 4 C -0.024 4.024 5 N -0.371 5.371 6 C 0.399 3.601 7 O -0.500 6.500 8 N -0.307 5.307 9 C -0.057 4.057 10 C -0.138 4.138 11 C -0.177 4.177 12 C 0.065 3.935 13 C -0.530 4.530 14 H 0.087 0.913 15 C -0.182 4.182 16 N -0.467 5.467 17 Si 0.809 3.191 18 H -0.187 1.187 19 H -0.188 1.188 20 H -0.192 1.192 21 C -0.240 4.240 22 C -0.117 4.117 23 C -0.053 4.053 24 C -0.028 4.028 25 O -0.305 6.305 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.250 0.750 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.544 -3.886 13.440 18.791 hybrid contribution 0.996 0.066 -0.701 1.219 sum -11.548 -3.821 12.739 17.614 Atomic orbital electron populations 1.21721 0.90283 1.03877 1.03668 1.22513 0.96941 0.94552 0.84158 0.93002 1.22307 0.78043 1.02205 0.99828 1.47376 1.06696 1.66885 1.16137 1.16064 0.81633 0.79254 0.83151 1.90865 1.75733 1.49649 1.33738 1.42038 1.04626 1.57376 1.26670 1.17112 0.91281 1.09901 0.87413 1.20538 0.93033 1.01059 0.99172 1.21168 0.99974 1.04326 0.92242 1.18026 0.91631 0.90363 0.93445 1.19718 0.92642 1.33242 1.07377 0.91263 1.26691 0.99676 0.92723 0.99134 1.69821 1.15272 1.33340 1.28309 0.85069 0.77456 0.78761 0.77813 1.18706 1.18800 1.19187 1.20941 0.96650 1.08634 0.97740 1.20528 0.98400 1.00751 0.92059 1.22728 1.00126 0.99312 0.83105 1.23179 0.80515 1.00227 0.98834 1.87939 1.21722 1.77435 1.43394 0.90884 0.90776 0.89816 0.89798 0.89694 0.74995 0.85697 0.86157 0.90436 0.88704 0.87641 0.88723 0.88165 0.93131 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.57 71.98 0.69 -1.22 16 2 C 0.08 1.48 3.40 30.69 0.10 1.58 16 3 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.10 2.28 5.94 86.35 0.51 2.80 16 5 N -0.63 -16.45 3.01 -834.52 -2.52 -18.96 16 6 C 0.70 24.99 8.15 179.05 1.46 26.45 16 7 O -0.62 -27.87 13.22 -3.98 -0.05 -27.93 16 8 N -0.66 -22.89 5.17 -316.78 -1.64 -24.53 16 9 C 0.04 1.64 6.31 38.56 0.24 1.89 16 10 C -0.12 -5.31 9.90 22.13 0.22 -5.09 16 11 C -0.16 -8.25 8.61 22.48 0.19 -8.05 16 12 C 0.07 3.79 5.55 -21.28 -0.12 3.67 16 13 C -0.50 -27.80 9.02 23.39 0.21 -27.59 16 14 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16 15 C 0.03 1.52 5.42 85.24 0.46 1.99 16 16 N -0.84 -43.88 10.59 21.82 0.23 -43.65 16 17 Si 0.99 39.30 29.56 68.60 2.03 41.33 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 21 C -0.22 -11.72 9.74 22.48 0.22 -11.50 16 22 C -0.10 -4.84 8.61 22.13 0.19 -4.65 16 23 C 0.07 1.19 6.55 86.50 0.57 1.75 16 24 C 0.05 0.75 7.00 72.22 0.51 1.26 16 25 O -0.39 -7.31 10.38 -148.98 -1.55 -8.86 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 2.28 7.06 -2.39 -0.02 2.26 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.41 10.83 6.48 -92.71 -0.60 10.23 16 32 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.12 6.54 6.13 -2.91 -0.02 6.53 16 34 H 0.28 13.43 8.30 -92.70 -0.77 12.66 16 35 H 0.09 4.89 8.06 -2.91 -0.02 4.86 16 36 H 0.11 5.29 6.21 -2.91 -0.02 5.28 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.46 5.88 -2.39 -0.01 1.44 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.55 326.19 2.42 -67.13 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.46 Total: 32.19 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 5.46 Total: -16.72 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.92 Total: -87.14 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -1.60 Total: -36.78 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.55 2.42 -67.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298487924.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.997 kcal (2) G-P(sol) polarization free energy of solvation -69.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds