Wall clock time and date at job start Tue Mar 31 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91060 * 2 1 4 4 C 1.55163 * 111.00345 * 123.89353 * 2 1 3 5 5 C 1.54322 * 102.94022 * 153.57839 * 4 2 1 6 6 N 1.47029 * 107.26994 * 337.81098 * 5 4 2 7 7 C 1.34782 * 125.64478 * 178.91680 * 6 5 4 8 8 O 1.21588 * 119.99529 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00033 * 0.02970 * 7 6 5 10 10 C 1.39945 * 119.99585 * 174.73447 * 9 7 6 11 11 C 1.38958 * 120.03104 * 146.44258 * 10 9 7 12 12 C 1.38164 * 120.06633 * 179.97438 * 11 10 9 13 13 C 1.38171 * 120.13775 * 359.97438 * 12 11 10 14 14 C 1.38916 * 120.06759 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.03073 * 180.02562 * 14 13 12 16 16 C 1.34833 * 117.00112 * 5.90973 * 15 14 13 17 17 H 1.08003 * 120.00104 * 5.40010 * 16 15 14 18 18 C 1.38653 * 119.99883 * 185.39805 * 16 15 14 19 19 N 1.31558 * 120.00049 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99773 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47437 * 60.00245 * 20 18 16 22 22 H 1.48500 * 109.47148 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46925 * 299.99734 * 20 18 16 24 24 C 1.38702 * 120.03860 * 326.16329 * 10 9 7 25 25 C 1.47414 * 108.70581 * 358.93826 * 6 5 4 26 26 H 1.09003 * 109.47071 * 296.09623 * 1 2 3 27 27 H 1.08992 * 109.47146 * 56.10492 * 1 2 3 28 28 H 1.09007 * 109.46717 * 176.10375 * 1 2 3 29 29 H 1.08992 * 110.72139 * 271.94140 * 4 2 1 30 30 H 1.09002 * 110.71890 * 35.04520 * 4 2 1 31 31 H 1.08995 * 109.88572 * 97.22341 * 5 4 2 32 32 H 1.09003 * 109.88732 * 218.39587 * 5 4 2 33 33 H 0.96996 * 120.00244 * 354.72971 * 9 7 6 34 34 H 1.07998 * 119.97300 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.93238 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.96469 * 179.97438 * 13 12 11 37 37 H 0.96998 * 119.99529 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.06733 * 0.02930 * 24 10 9 39 39 H 1.09001 * 110.37101 * 265.28944 * 25 6 5 40 40 H 1.09002 * 110.37132 * 142.96799 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0862 -0.8078 1.2024 5 6 3.4675 -1.2740 0.6962 6 7 3.4272 -1.2430 -0.7732 7 6 4.4481 -1.5605 -1.5938 8 8 4.3012 -1.4980 -2.7991 9 7 5.6318 -1.9472 -1.0783 10 6 6.6560 -2.3822 -1.9271 11 6 7.9830 -2.1267 -1.6035 12 6 8.9947 -2.5563 -2.4407 13 6 8.6906 -3.2414 -3.6014 14 6 7.3660 -3.4998 -3.9304 15 8 7.0682 -4.1734 -5.0708 16 6 8.1040 -4.6701 -5.7766 17 1 9.1078 -4.6004 -5.3842 18 6 7.8806 -5.2705 -7.0063 19 7 6.6580 -5.3550 -7.4846 20 14 9.3157 -5.9593 -7.9838 21 1 9.9961 -7.0128 -7.1887 22 1 8.8146 -6.5432 -9.2539 23 1 10.2773 -4.8688 -8.2864 24 6 6.3478 -3.0738 -3.0892 25 6 2.0854 -0.8067 -1.2002 26 1 -0.3633 0.4521 0.9229 27 1 -0.3633 0.5731 -0.8530 28 1 -0.3633 -1.0254 -0.0698 29 1 2.1922 -0.1697 2.0797 30 1 1.4452 -1.6613 1.4231 31 1 4.2426 -0.5996 1.0600 32 1 3.6651 -2.2893 1.0403 33 1 5.7739 -1.9240 -0.1191 34 1 8.2239 -1.5919 -0.6967 35 1 10.0253 -2.3569 -2.1868 36 1 9.4837 -3.5755 -4.2540 37 1 6.5018 -5.7747 -8.3450 38 1 5.3174 -3.2771 -3.3408 39 1 1.4520 -1.6705 -1.4023 40 1 2.1560 -0.1721 -2.0836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299628760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:19 Heat of formation + Delta-G solvation = -23.675985 kcal Electronic energy + Delta-G solvation = -22461.328252 eV Core-core repulsion = 19049.031191 eV Total energy + Delta-G solvation = -3412.297061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52092 -38.98593 -37.93078 -36.34502 -34.08918 -32.94942 -32.17982 -29.90833 -29.39143 -28.44800 -26.41121 -25.20434 -23.50056 -22.05033 -21.34490 -20.60385 -19.77558 -18.36209 -17.91019 -17.00110 -16.53459 -15.59774 -15.12947 -15.00397 -14.81445 -14.25005 -14.13646 -13.91680 -13.71847 -13.46266 -13.14544 -13.02295 -12.81311 -12.49450 -12.43897 -12.13591 -11.68116 -11.44798 -11.41042 -11.12083 -11.03988 -10.97426 -10.92297 -10.72316 -10.44088 -9.93944 -9.67930 -9.22116 -8.75687 -8.69167 -7.58386 -7.11024 -6.36136 -3.95432 2.14093 2.41625 2.61977 3.18033 3.19142 3.22307 3.39131 3.90617 4.04788 4.26057 4.29064 4.50029 4.67005 4.87864 5.06415 5.09629 5.19192 5.28860 5.32321 5.40477 5.41631 5.53472 5.65371 5.68111 5.74075 5.80042 5.89130 5.97900 6.09863 6.17256 6.30082 6.46464 6.66598 6.93356 7.09073 7.13710 7.29321 7.40308 7.54762 7.88478 8.04117 8.08792 8.73236 9.08529 9.81000 10.81867 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.003277 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.024160 B = 8541.632690 C = 9446.685490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.097 3.903 6 N -0.639 5.639 7 C 0.716 3.284 8 O -0.557 6.557 9 N -0.680 5.680 10 C 0.196 3.804 11 C -0.238 4.238 12 C -0.057 4.057 13 C -0.247 4.247 14 C 0.169 3.831 15 O -0.174 6.174 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.187 4.187 25 C 0.128 3.872 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.067 0.933 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 8.981 18.822 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.027 4.027 6 N -0.379 5.379 7 C 0.419 3.581 8 O -0.432 6.432 9 N -0.327 5.327 10 C 0.102 3.898 11 C -0.259 4.259 12 C -0.076 4.076 13 C -0.267 4.267 14 C 0.114 3.886 15 O -0.077 6.077 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.209 4.209 25 C 0.005 3.995 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.145 0.855 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.085 0.915 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.708 8.842 17.535 21.097 hybrid contribution 0.895 -0.260 0.109 0.939 sum -6.813 8.582 17.644 20.770 Atomic orbital electron populations 1.21691 0.93566 1.02413 1.02174 1.22389 0.96294 0.99443 0.94528 0.89709 1.22682 0.95210 1.00382 0.98036 1.22013 0.98607 1.01205 0.80831 1.47573 1.12175 1.72266 1.05865 1.15467 0.79602 0.78321 0.84734 1.91038 1.81660 1.58412 1.12048 1.42497 1.12014 1.68555 1.09616 1.16946 0.86079 0.95380 0.91391 1.20217 0.90896 1.11396 1.03421 1.20482 0.97546 0.96125 0.93479 1.21168 0.96630 1.08516 1.00350 1.19113 0.92038 0.89898 0.87505 1.84011 1.34935 1.59738 1.29020 1.21290 0.87495 1.36876 1.01124 0.89090 1.25299 0.98012 0.97187 0.96082 1.70051 1.19649 1.40917 1.18992 0.85785 0.79699 0.79173 0.78758 1.19528 1.20335 1.19525 1.20041 0.99344 1.05575 0.95956 1.22160 0.81660 0.98132 0.97537 0.92130 0.92104 0.92173 0.90040 0.90307 0.91696 0.91496 0.76502 0.87491 0.87043 0.85468 0.92018 0.85285 0.91452 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.31 37.16 0.35 -0.48 16 2 C -0.11 -0.79 3.64 -88.47 -0.32 -1.11 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -0.78 6.42 -24.89 -0.16 -0.94 16 5 C 0.10 0.81 6.16 -3.06 -0.02 0.79 16 6 N -0.64 -8.25 3.33 -176.24 -0.59 -8.83 16 7 C 0.72 12.62 8.22 -86.92 -0.71 11.91 16 8 O -0.56 -12.69 14.32 5.29 0.08 -12.62 16 9 N -0.68 -10.95 5.30 -14.24 -0.08 -11.02 16 10 C 0.20 3.90 6.27 -83.72 -0.52 3.37 16 11 C -0.24 -4.27 9.96 -39.34 -0.39 -4.66 16 12 C -0.06 -1.08 10.03 -39.63 -0.40 -1.48 16 13 C -0.25 -5.61 9.13 -39.35 -0.36 -5.97 16 14 C 0.17 4.42 6.64 -39.13 -0.26 4.16 16 15 O -0.17 -5.29 9.76 0.04 0.00 -5.29 16 16 C -0.39 -11.39 9.44 30.89 0.29 -11.10 16 17 H 0.09 2.42 5.29 -52.48 -0.28 2.14 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -26.32 13.67 55.48 0.76 -25.57 16 20 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.19 -4.54 8.60 -39.21 -0.34 -4.88 16 25 C 0.13 1.43 6.38 -2.54 -0.02 1.41 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.45 8.04 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 4.78 7.80 -40.82 -0.32 4.46 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.13 2.85 5.71 -52.49 -0.30 2.55 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.13 3.38 6.45 -52.49 -0.34 3.04 16 39 H 0.07 0.75 7.98 -51.93 -0.41 0.33 16 40 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -35.75 333.57 -8.20 -43.96 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.42 Total: 6.22 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.96 Total: -7.98 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.10 Total: -45.42 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.08 Total: -17.91 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.75 -8.20 -43.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299628760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.281 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds