Wall clock time and date at job start Tue Mar 31 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91060 * 2 1 4 4 C 1.55163 * 111.00345 * 123.89353 * 2 1 3 5 5 C 1.54322 * 102.94022 * 153.57839 * 4 2 1 6 6 N 1.47029 * 107.26994 * 337.81098 * 5 4 2 7 7 C 1.34782 * 125.64478 * 178.91680 * 6 5 4 8 8 O 1.21588 * 119.99529 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00033 * 0.02970 * 7 6 5 10 10 C 1.39945 * 119.99585 * 174.73447 * 9 7 6 11 11 C 1.38958 * 120.03104 * 146.44258 * 10 9 7 12 12 C 1.38164 * 120.06633 * 179.97438 * 11 10 9 13 13 C 1.38171 * 120.13775 * 359.97438 * 12 11 10 14 14 C 1.38916 * 120.06759 * 0.02562 * 13 12 11 15 15 O 1.35750 * 120.03073 * 180.02562 * 14 13 12 16 16 C 1.34833 * 117.00112 * 5.90973 * 15 14 13 17 17 H 1.08003 * 120.00104 * 5.40010 * 16 15 14 18 18 C 1.38653 * 119.99883 * 185.39805 * 16 15 14 19 19 N 1.31558 * 120.00049 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99773 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47437 * 60.00245 * 20 18 16 22 22 H 1.48500 * 109.47148 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46925 * 299.99734 * 20 18 16 24 24 C 1.38702 * 120.03860 * 326.16329 * 10 9 7 25 25 C 1.47414 * 108.70581 * 358.93826 * 6 5 4 26 26 H 1.09003 * 109.47071 * 296.09623 * 1 2 3 27 27 H 1.08992 * 109.47146 * 56.10492 * 1 2 3 28 28 H 1.09007 * 109.46717 * 176.10375 * 1 2 3 29 29 H 1.08992 * 110.72139 * 271.94140 * 4 2 1 30 30 H 1.09002 * 110.71890 * 35.04520 * 4 2 1 31 31 H 1.08995 * 109.88572 * 97.22341 * 5 4 2 32 32 H 1.09003 * 109.88732 * 218.39587 * 5 4 2 33 33 H 0.96996 * 120.00244 * 354.72971 * 9 7 6 34 34 H 1.07998 * 119.97300 * 359.97438 * 11 10 9 35 35 H 1.08003 * 119.93238 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.96469 * 179.97438 * 13 12 11 37 37 H 0.96998 * 119.99529 * 179.97438 * 19 18 16 38 38 H 1.08000 * 120.06733 * 0.02930 * 24 10 9 39 39 H 1.09001 * 110.37101 * 265.28944 * 25 6 5 40 40 H 1.09002 * 110.37132 * 142.96799 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0862 -0.8078 1.2024 5 6 3.4675 -1.2740 0.6962 6 7 3.4272 -1.2430 -0.7732 7 6 4.4481 -1.5605 -1.5938 8 8 4.3012 -1.4980 -2.7991 9 7 5.6318 -1.9472 -1.0783 10 6 6.6560 -2.3822 -1.9271 11 6 7.9830 -2.1267 -1.6035 12 6 8.9947 -2.5563 -2.4407 13 6 8.6906 -3.2414 -3.6014 14 6 7.3660 -3.4998 -3.9304 15 8 7.0682 -4.1734 -5.0708 16 6 8.1040 -4.6701 -5.7766 17 1 9.1078 -4.6004 -5.3842 18 6 7.8806 -5.2705 -7.0063 19 7 6.6580 -5.3550 -7.4846 20 14 9.3157 -5.9593 -7.9838 21 1 9.9961 -7.0128 -7.1887 22 1 8.8146 -6.5432 -9.2539 23 1 10.2773 -4.8688 -8.2864 24 6 6.3478 -3.0738 -3.0892 25 6 2.0854 -0.8067 -1.2002 26 1 -0.3633 0.4521 0.9229 27 1 -0.3633 0.5731 -0.8530 28 1 -0.3633 -1.0254 -0.0698 29 1 2.1922 -0.1697 2.0797 30 1 1.4452 -1.6613 1.4231 31 1 4.2426 -0.5996 1.0600 32 1 3.6651 -2.2893 1.0403 33 1 5.7739 -1.9240 -0.1191 34 1 8.2239 -1.5919 -0.6967 35 1 10.0253 -2.3569 -2.1868 36 1 9.4837 -3.5755 -4.2540 37 1 6.5018 -5.7747 -8.3450 38 1 5.3174 -3.2771 -3.3408 39 1 1.4520 -1.6705 -1.4023 40 1 2.1560 -0.1721 -2.0836 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299628760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:18 Heat of formation + Delta-G solvation = -48.895829 kcal Electronic energy + Delta-G solvation = -22462.421866 eV Core-core repulsion = 19049.031191 eV Total energy + Delta-G solvation = -3413.390675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.85166 -40.60622 -39.21644 -38.02789 -35.63601 -34.28582 -33.86446 -31.16627 -30.59240 -30.03028 -27.49305 -27.13417 -24.51323 -23.52483 -23.02698 -21.32510 -21.10917 -20.00269 -19.41073 -18.75338 -17.59378 -17.07406 -16.74854 -16.49535 -16.25461 -15.83985 -15.62954 -15.51180 -14.83044 -14.52835 -14.42213 -14.27096 -14.08881 -13.71010 -13.56698 -13.31958 -13.17556 -12.93523 -12.69405 -12.62970 -12.37443 -12.15848 -12.03540 -11.62891 -11.60154 -11.55169 -11.36447 -11.04726 -10.75706 -9.81338 -9.30491 -8.84484 -8.46227 -6.16306 0.44997 0.70662 1.34015 1.39925 1.47046 1.52500 1.97488 2.18513 2.81895 2.84629 3.18123 3.47121 3.60449 3.63360 3.92242 4.13840 4.25591 4.36968 4.38815 4.42057 4.52493 4.58691 4.68337 4.70233 4.74831 4.84808 4.91699 4.99318 5.02793 5.10336 5.15449 5.21948 5.30394 5.40892 5.45887 5.47720 5.63403 5.74127 5.95588 6.03149 6.20962 6.79931 6.97017 7.39210 7.80265 8.77780 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.003277 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.024160 B = 8541.632690 C = 9446.685490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.089 0.911 4 C -0.115 4.115 5 C 0.086 3.914 6 N -0.634 5.634 7 C 0.707 3.293 8 O -0.622 6.622 9 N -0.663 5.663 10 C 0.203 3.797 11 C -0.205 4.205 12 C -0.045 4.045 13 C -0.256 4.256 14 C 0.129 3.871 15 O -0.237 6.237 16 C -0.415 4.415 17 H 0.108 0.892 18 C -0.029 4.029 19 N -0.926 5.926 20 Si 1.025 2.975 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.255 1.255 24 C -0.215 4.215 25 C 0.116 3.884 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.425 0.575 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.126 0.874 37 H 0.272 0.728 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 10.524 23.050 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.036 4.036 6 N -0.371 5.371 7 C 0.409 3.591 8 O -0.501 6.501 9 N -0.312 5.312 10 C 0.107 3.893 11 C -0.226 4.226 12 C -0.063 4.063 13 C -0.276 4.276 14 C 0.078 3.922 15 O -0.143 6.143 16 C -0.490 4.490 17 H 0.125 0.875 18 C -0.225 4.225 19 N -0.565 5.565 20 Si 0.843 3.157 21 H -0.177 1.177 22 H -0.198 1.198 23 H -0.179 1.179 24 C -0.237 4.237 25 C -0.007 4.007 26 H 0.099 0.901 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.264 0.736 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.143 0.857 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.667 10.428 21.918 24.925 hybrid contribution 0.155 -0.542 -0.859 1.027 sum -5.512 9.886 21.059 23.908 Atomic orbital electron populations 1.21688 0.92285 1.02537 1.03065 1.22347 0.97163 0.99028 0.92920 0.89261 1.22720 0.93586 1.00875 0.98076 1.22430 1.00983 1.02696 0.77469 1.47662 1.11280 1.70337 1.07837 1.15771 0.80639 0.78281 0.84393 1.91007 1.82832 1.61016 1.15251 1.42249 1.10918 1.67677 1.10372 1.17108 0.88207 0.93751 0.90199 1.20848 0.89023 1.08441 1.04297 1.21049 1.00435 0.93523 0.91294 1.21333 0.94783 1.09314 1.02123 1.19637 0.94256 0.91214 0.87106 1.83973 1.36392 1.62596 1.31375 1.21894 0.88084 1.37356 1.01710 0.87513 1.26758 1.01503 0.97270 0.96997 1.70233 1.22773 1.43517 1.19929 0.84569 0.75448 0.78866 0.76769 1.17710 1.19799 1.17883 1.20033 0.97378 1.08028 0.98308 1.22385 0.81169 0.98243 0.98862 0.90068 0.92564 0.92295 0.87059 0.89526 0.89475 0.90408 0.73558 0.81794 0.81889 0.85675 0.91894 0.89089 0.91956 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.31 71.98 0.67 -0.67 16 2 C -0.10 -1.21 3.64 -9.40 -0.03 -1.24 16 3 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.11 -0.99 6.42 31.78 0.20 -0.79 16 5 C 0.09 1.16 6.16 86.73 0.53 1.69 16 6 N -0.63 -15.98 3.33 -829.76 -2.76 -18.74 16 7 C 0.71 25.37 8.22 179.05 1.47 26.84 16 8 O -0.62 -30.43 14.32 -3.99 -0.06 -30.49 16 9 N -0.66 -20.31 5.30 -317.23 -1.68 -21.99 16 10 C 0.20 7.85 6.27 38.13 0.24 8.09 16 11 C -0.21 -6.41 9.96 22.42 0.22 -6.19 16 12 C -0.04 -1.51 10.03 22.24 0.22 -1.28 16 13 C -0.26 -11.60 9.13 22.42 0.20 -11.40 16 14 C 0.13 7.13 6.64 22.56 0.15 7.28 16 15 O -0.24 -15.65 9.76 -22.77 -0.22 -15.87 16 16 C -0.41 -25.56 9.44 67.92 0.64 -24.92 16 17 H 0.11 5.90 5.29 -2.91 -0.02 5.88 16 18 C -0.03 -1.71 5.49 84.83 0.47 -1.25 16 19 N -0.93 -60.63 13.67 21.61 0.30 -60.33 16 20 Si 1.03 44.65 29.55 68.60 2.03 46.68 16 21 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 24 C -0.22 -11.07 8.60 22.51 0.19 -10.88 16 25 C 0.12 2.65 6.38 86.86 0.55 3.20 16 26 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.07 -2.38 -0.02 0.58 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.67 8.04 -2.39 -0.02 0.65 16 31 H 0.09 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.42 8.53 7.80 -92.71 -0.72 7.81 16 34 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 35 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 36 H 0.13 5.63 5.71 -2.91 -0.02 5.61 16 37 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 38 H 0.09 5.30 6.45 -2.91 -0.02 5.28 16 39 H 0.06 1.46 7.98 -2.39 -0.02 1.44 16 40 H 0.05 1.48 8.04 -2.39 -0.02 1.46 16 Total: -1.00 -90.02 333.57 3.68 -86.34 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.34 Total: 25.92 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 5.74 Total: -11.51 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -4.14 Total: -101.07 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -0.28 Total: -46.36 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -90.02 3.68 -86.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299628760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.443 kcal (2) G-P(sol) polarization free energy of solvation -90.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds