Wall clock time and date at job start Tue Mar 31 2020 06:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 5 5 C 1.46902 * 110.99800 * 274.99934 * 4 2 1 6 6 C 1.50706 * 109.46577 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00167 * 359.72326 * 6 5 4 8 8 C 1.37879 * 119.99394 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 C 1.50695 * 109.47212 * 240.00355 * 2 1 3 15 15 C 1.38308 * 119.96458 * 279.99727 * 14 2 1 16 16 C 1.38255 * 120.14381 * 179.97438 * 15 14 2 17 17 C 1.38137 * 120.06855 * 0.02562 * 16 15 14 18 18 C 1.38841 * 119.92876 * 0.02562 * 17 16 15 19 19 N 1.39963 * 120.06953 * 179.97438 * 18 17 16 20 20 C 1.47088 * 125.55678 * 359.97438 * 19 18 17 21 21 C 1.54093 * 103.77820 * 179.97438 * 20 19 18 22 22 O 1.45702 * 104.00534 * 359.97438 * 21 20 19 23 23 C 1.33780 * 109.47947 * 359.77159 * 22 21 20 24 24 O 1.21508 * 123.07278 * 180.22703 * 23 22 21 25 25 C 1.38092 * 119.96996 * 99.72676 * 14 2 1 26 26 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 27 27 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 29 29 H 1.00891 * 110.99988 * 38.95349 * 4 2 1 30 30 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 31 31 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 32 32 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 33 33 H 1.08000 * 119.92382 * 0.02562 * 15 14 2 34 34 H 1.07999 * 119.96657 * 180.02562 * 16 15 14 35 35 H 1.07996 * 120.03565 * 179.97438 * 17 16 15 36 36 H 1.08996 * 110.56892 * 298.53585 * 20 19 18 37 37 H 1.08994 * 110.56401 * 61.24622 * 20 19 18 38 38 H 1.08994 * 110.52158 * 118.62971 * 21 20 19 39 39 H 1.08999 * 110.51772 * 241.37310 * 21 20 19 40 40 H 1.08002 * 120.03049 * 0.02562 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5886 -0.5215 3.5557 7 1 2.8343 -1.5705 3.4803 8 6 2.7320 0.1354 4.7594 9 7 2.4266 1.4112 4.8528 10 14 3.3600 -0.7869 6.2576 11 1 4.8409 -0.6916 6.3128 12 1 2.7793 -0.1884 7.4865 13 1 2.9588 -2.2136 6.1647 14 6 2.0323 -0.7103 -1.2305 15 6 2.0665 -2.0925 -1.2646 16 6 2.5262 -2.7480 -2.3918 17 6 2.9534 -2.0237 -3.4877 18 6 2.9214 -0.6360 -3.4562 19 7 3.3541 0.1008 -4.5647 20 6 3.8651 -0.4662 -5.8220 21 6 4.1891 0.7731 -6.6785 22 8 3.8298 1.8966 -5.8232 23 6 3.3643 1.4377 -4.6560 24 8 2.9888 2.1665 -3.7592 25 6 2.4528 0.0194 -2.3248 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.4496 -1.4978 1.4101 30 1 1.0871 0.6163 2.5526 31 1 2.7589 1.0462 2.1183 32 1 2.5272 1.8731 5.6998 33 1 1.7326 -2.6610 -0.4092 34 1 2.5512 -3.8275 -2.4155 35 1 3.3128 -2.5363 -4.3677 36 1 4.7663 -1.0516 -5.6397 37 1 3.1029 -1.0787 -6.3035 38 1 5.2511 0.8022 -6.9222 39 1 3.5872 0.7774 -7.5872 40 1 2.4222 1.0987 -2.2990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299733667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:16 Heat of formation + Delta-G solvation = -34.674023 kcal Electronic energy + Delta-G solvation = -22567.740279 eV Core-core repulsion = 19154.966308 eV Total energy + Delta-G solvation = -3412.773972 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.11410 -39.35946 -37.52446 -36.59499 -35.15692 -32.83126 -31.09592 -30.80405 -29.19134 -28.62396 -25.95816 -24.64970 -23.79975 -22.94979 -21.52711 -21.25733 -19.89647 -17.87232 -17.77387 -17.18994 -16.55325 -16.11397 -15.45100 -14.96808 -14.71332 -14.53081 -14.33448 -14.26472 -14.09909 -13.64370 -13.41433 -13.24775 -12.84433 -12.72726 -12.17120 -12.05789 -11.79837 -11.74047 -11.27238 -11.10296 -11.04085 -10.74409 -10.64344 -10.52230 -10.35088 -10.15944 -9.86022 -9.16733 -8.59699 -8.43828 -7.95264 -7.26158 -5.99300 -4.01221 1.39701 1.55793 2.03190 2.55642 3.04113 3.34900 3.40459 3.43883 3.64483 3.94698 4.21261 4.23158 4.46211 4.72164 4.81312 4.95244 4.96764 5.16895 5.20684 5.36437 5.44018 5.48557 5.64563 5.69223 5.75478 5.84848 6.09324 6.22101 6.31086 6.38591 6.46309 6.54522 6.68223 6.97638 7.05918 7.22029 7.31082 7.47565 7.74225 7.81882 8.16546 8.42432 8.63918 9.07802 9.63317 11.11762 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.003248 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.605801 B = 8618.371938 C = 9009.346569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.114 3.886 3 H 0.083 0.917 4 N -0.680 5.680 5 C 0.194 3.806 6 C -0.513 4.513 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.021 4.021 15 C -0.115 4.115 16 C -0.096 4.096 17 C -0.166 4.166 18 C 0.170 3.830 19 N -0.568 5.568 20 C 0.060 3.940 21 C 0.042 3.958 22 O -0.323 6.323 23 C 0.641 3.359 24 O -0.495 6.495 25 C -0.150 4.150 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.329 0.671 30 H -0.011 1.011 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -7.183 -25.458 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 H 0.101 0.899 4 N -0.309 5.309 5 C 0.068 3.932 6 C -0.552 4.552 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.022 4.022 15 C -0.134 4.134 16 C -0.114 4.114 17 C -0.187 4.187 18 C 0.079 3.921 19 N -0.305 5.305 20 C -0.063 4.063 21 C -0.033 4.033 22 O -0.233 6.233 23 C 0.395 3.605 24 O -0.378 6.378 25 C -0.170 4.170 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.007 0.993 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.472 -6.254 -25.137 25.946 hybrid contribution -0.431 -0.489 0.888 1.101 sum 1.041 -6.743 -24.250 25.191 Atomic orbital electron populations 1.22449 0.96861 1.01763 1.02056 1.20480 0.92228 0.97742 0.89208 0.89863 1.60768 1.55217 1.10455 1.04498 1.19596 0.95418 0.91812 0.86405 1.21176 1.43592 0.96860 0.93575 0.91985 1.24989 0.95676 0.94942 0.98991 1.69966 1.48768 1.09034 1.25904 0.86488 0.79013 0.79816 0.81997 1.20646 1.21346 1.19879 1.19918 0.94735 0.93561 0.94000 1.21009 1.00442 0.94158 0.97785 1.20865 0.98373 0.99456 0.92729 1.20521 1.06986 0.90884 1.00267 1.17299 0.99236 0.90192 0.85384 1.45338 1.63929 1.05839 1.15433 1.22933 1.01961 0.97351 0.84037 1.24334 1.03774 0.81586 0.93618 1.87335 1.77161 1.32854 1.25999 1.18479 0.77756 0.81873 0.82366 1.91004 1.50213 1.60009 1.36589 1.21424 1.01501 1.02449 0.91651 0.92837 0.92722 0.91814 0.85415 0.99306 0.95360 0.92926 0.85580 0.85786 0.86349 0.88210 0.88275 0.87179 0.87255 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.14 37.16 0.34 -2.50 16 2 C 0.11 2.15 2.79 -68.86 -0.19 1.96 16 3 H 0.08 1.71 7.66 -51.93 -0.40 1.31 16 4 N -0.68 -14.75 5.69 -109.21 -0.62 -15.37 16 5 C 0.19 5.17 5.24 -4.97 -0.03 5.14 16 6 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 16 7 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 10 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 C -0.02 -0.35 4.95 -104.65 -0.52 -0.87 16 15 C -0.11 -1.70 9.32 -39.55 -0.37 -2.06 16 16 C -0.10 -1.16 10.04 -39.61 -0.40 -1.55 16 17 C -0.17 -1.89 9.49 -39.40 -0.37 -2.26 16 18 C 0.17 2.33 6.63 -83.68 -0.56 1.78 16 19 N -0.57 -6.60 3.16 -118.27 -0.37 -6.97 16 20 C 0.06 0.34 6.49 -3.15 -0.02 0.32 16 21 C 0.04 0.20 8.23 37.73 0.31 0.51 16 22 O -0.32 -3.56 11.09 -37.85 -0.42 -3.98 16 23 C 0.64 9.02 8.77 53.71 0.47 9.49 16 24 O -0.50 -9.05 14.75 -19.11 -0.28 -9.34 16 25 C -0.15 -2.49 8.93 -39.39 -0.35 -2.84 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.06 1.13 7.45 -51.93 -0.39 0.74 16 29 H 0.33 6.68 7.81 -39.30 -0.31 6.37 16 30 H -0.01 -0.30 7.44 -51.93 -0.39 -0.69 16 31 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.13 1.81 7.24 -52.49 -0.38 1.43 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.12 0.95 7.31 -52.49 -0.38 0.56 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.15 2.82 5.22 -52.49 -0.27 2.55 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -35.04 334.83 -8.47 -43.51 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.44 Total: 3.12 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.10 Total: -6.44 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.26 Total: -48.89 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.70 Total: -13.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.04 -8.47 -43.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299733667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.839 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds