Wall clock time and date at job start Tue Mar 31 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 5 5 C 1.46902 * 110.99800 * 274.99934 * 4 2 1 6 6 C 1.50706 * 109.46577 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00167 * 359.72326 * 6 5 4 8 8 C 1.37879 * 119.99394 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00338 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99424 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47474 * 90.00322 * 10 8 6 12 12 H 1.48507 * 109.46754 * 210.00056 * 10 8 6 13 13 H 1.48498 * 109.47278 * 329.99887 * 10 8 6 14 14 C 1.50695 * 109.47212 * 240.00355 * 2 1 3 15 15 C 1.38308 * 119.96458 * 279.99727 * 14 2 1 16 16 C 1.38255 * 120.14381 * 179.97438 * 15 14 2 17 17 C 1.38137 * 120.06855 * 0.02562 * 16 15 14 18 18 C 1.38841 * 119.92876 * 0.02562 * 17 16 15 19 19 N 1.39963 * 120.06953 * 179.97438 * 18 17 16 20 20 C 1.47088 * 125.55678 * 359.97438 * 19 18 17 21 21 C 1.54093 * 103.77820 * 179.97438 * 20 19 18 22 22 O 1.45702 * 104.00534 * 359.97438 * 21 20 19 23 23 C 1.33780 * 109.47947 * 359.77159 * 22 21 20 24 24 O 1.21508 * 123.07278 * 180.22703 * 23 22 21 25 25 C 1.38092 * 119.96996 * 99.72676 * 14 2 1 26 26 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 27 27 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 29 29 H 1.00891 * 110.99988 * 38.95349 * 4 2 1 30 30 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 31 31 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 32 32 H 0.96996 * 119.99730 * 179.97438 * 9 8 6 33 33 H 1.08000 * 119.92382 * 0.02562 * 15 14 2 34 34 H 1.07999 * 119.96657 * 180.02562 * 16 15 14 35 35 H 1.07996 * 120.03565 * 179.97438 * 17 16 15 36 36 H 1.08996 * 110.56892 * 298.53585 * 20 19 18 37 37 H 1.08994 * 110.56401 * 61.24622 * 20 19 18 38 38 H 1.08994 * 110.52158 * 118.62971 * 21 20 19 39 39 H 1.08999 * 110.51772 * 241.37310 * 21 20 19 40 40 H 1.08002 * 120.03049 * 0.02562 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5886 -0.5215 3.5557 7 1 2.8343 -1.5705 3.4803 8 6 2.7320 0.1354 4.7594 9 7 2.4266 1.4112 4.8528 10 14 3.3600 -0.7869 6.2576 11 1 4.8409 -0.6916 6.3128 12 1 2.7793 -0.1884 7.4865 13 1 2.9588 -2.2136 6.1647 14 6 2.0323 -0.7103 -1.2305 15 6 2.0665 -2.0925 -1.2646 16 6 2.5262 -2.7480 -2.3918 17 6 2.9534 -2.0237 -3.4877 18 6 2.9214 -0.6360 -3.4562 19 7 3.3541 0.1008 -4.5647 20 6 3.8651 -0.4662 -5.8220 21 6 4.1891 0.7731 -6.6785 22 8 3.8298 1.8966 -5.8232 23 6 3.3643 1.4377 -4.6560 24 8 2.9888 2.1665 -3.7592 25 6 2.4528 0.0194 -2.3248 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.4496 -1.4978 1.4101 30 1 1.0871 0.6163 2.5526 31 1 2.7589 1.0462 2.1183 32 1 2.5272 1.8731 5.6998 33 1 1.7326 -2.6610 -0.4092 34 1 2.5512 -3.8275 -2.4155 35 1 3.3128 -2.5363 -4.3677 36 1 4.7663 -1.0516 -5.6397 37 1 3.1029 -1.0787 -6.3035 38 1 5.2511 0.8022 -6.9222 39 1 3.5872 0.7774 -7.5872 40 1 2.4222 1.0987 -2.2990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299733667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:15 Heat of formation + Delta-G solvation = -59.390995 kcal Electronic energy + Delta-G solvation = -22568.812088 eV Core-core repulsion = 19154.966308 eV Total energy + Delta-G solvation = -3413.845780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.95697 -40.46713 -38.59192 -37.98319 -36.31758 -34.86429 -32.49173 -31.77417 -30.20103 -29.87535 -27.96836 -25.44284 -24.90254 -24.30166 -23.27203 -22.32393 -21.09225 -19.04743 -18.49454 -18.36079 -18.03075 -17.41781 -16.82176 -16.41035 -15.98341 -15.63513 -15.60341 -15.19391 -15.07335 -14.97054 -14.68586 -14.41439 -14.25518 -13.92181 -13.55003 -13.32177 -13.23645 -13.05913 -12.89527 -12.70816 -12.55704 -12.22987 -12.10619 -11.87339 -11.83050 -11.36552 -11.25245 -11.13416 -10.67886 -9.72599 -9.12059 -8.96195 -8.22463 -6.34520 0.31944 0.46520 1.19407 1.40743 1.43630 1.54561 1.54972 2.39784 2.44273 2.87620 3.10632 3.23726 3.38586 3.67088 3.91254 3.94421 4.06334 4.20223 4.28417 4.30533 4.38075 4.51755 4.56658 4.59993 4.69921 4.72090 4.83769 4.84707 5.01935 5.11742 5.18343 5.27238 5.38730 5.42664 5.57598 5.60861 5.79914 6.01105 6.08624 6.23954 6.43101 6.70876 6.75185 6.89308 7.36484 8.89430 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.003248 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.605801 B = 8618.371938 C = 9009.346569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 H 0.046 0.954 4 N -0.673 5.673 5 C 0.211 3.789 6 C -0.534 4.534 7 H 0.069 0.931 8 C -0.002 4.002 9 N -0.937 5.937 10 Si 0.977 3.023 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.258 1.258 14 C -0.041 4.041 15 C -0.128 4.128 16 C -0.084 4.084 17 C -0.144 4.144 18 C 0.166 3.834 19 N -0.567 5.567 20 C 0.054 3.946 21 C 0.036 3.964 22 O -0.340 6.340 23 C 0.633 3.367 24 O -0.557 6.557 25 C -0.180 4.180 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.339 0.661 30 H -0.035 1.035 31 H -0.011 1.011 32 H 0.265 0.735 33 H 0.127 0.873 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -11.219 -27.861 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.004 3.996 3 H 0.065 0.935 4 N -0.304 5.304 5 C 0.083 3.917 6 C -0.572 4.572 7 H 0.087 0.913 8 C -0.200 4.200 9 N -0.577 5.577 10 Si 0.801 3.199 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.182 1.182 14 C -0.042 4.042 15 C -0.147 4.147 16 C -0.102 4.102 17 C -0.165 4.165 18 C 0.074 3.926 19 N -0.304 5.304 20 C -0.067 4.067 21 C -0.037 4.037 22 O -0.250 6.250 23 C 0.389 3.611 24 O -0.445 6.445 25 C -0.201 4.201 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.158 0.842 30 H -0.017 1.017 31 H 0.007 0.993 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.537 -10.332 -27.622 29.600 hybrid contribution -0.714 0.770 1.420 1.766 sum 1.824 -9.562 -26.202 27.952 Atomic orbital electron populations 1.22320 0.95130 1.02973 1.01598 1.20413 0.93752 0.96055 0.89331 0.93527 1.60623 1.56228 1.09955 1.03594 1.19198 0.92973 0.91471 0.88071 1.21540 1.43909 0.97300 0.94423 0.91301 1.26031 0.95563 0.95816 1.02609 1.70117 1.49687 1.10928 1.26987 0.85265 0.78342 0.78921 0.77341 1.20017 1.20736 1.18227 1.19623 0.97022 0.94667 0.92934 1.21121 1.01311 0.92912 0.99337 1.21309 0.96142 1.01379 0.91382 1.21003 1.04560 0.89386 1.01515 1.17428 0.98691 0.91417 0.85090 1.45466 1.63067 1.05159 1.16701 1.23474 1.03901 0.97958 0.81330 1.24926 1.06275 0.79182 0.93349 1.87300 1.76647 1.35555 1.25464 1.18763 0.77320 0.82490 0.82536 1.90962 1.52823 1.61690 1.39019 1.21268 1.03929 1.01198 0.93687 0.91592 0.90548 0.93856 0.84236 1.01687 0.99326 0.92653 0.85466 0.81807 0.81449 0.85576 0.85118 0.84410 0.84106 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 9.14 71.98 0.66 -5.00 16 2 C 0.11 4.68 2.79 44.17 0.12 4.80 16 3 H 0.05 2.18 7.66 -2.38 -0.02 2.17 16 4 N -0.67 -30.80 5.69 -499.44 -2.84 -33.65 16 5 C 0.21 11.99 5.24 85.56 0.45 12.43 16 6 C -0.53 -31.48 9.32 25.60 0.24 -31.24 16 7 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 8 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 9 N -0.94 -58.95 13.29 21.45 0.28 -58.66 16 10 Si 0.98 45.41 29.54 68.60 2.03 47.44 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 14 C -0.04 -1.44 4.95 -19.88 -0.10 -1.54 16 15 C -0.13 -3.60 9.32 22.29 0.21 -3.39 16 16 C -0.08 -1.69 10.04 22.25 0.22 -1.46 16 17 C -0.14 -2.65 9.49 22.39 0.21 -2.44 16 18 C 0.17 4.34 6.63 38.14 0.25 4.59 16 19 N -0.57 -12.28 3.16 -759.82 -2.40 -14.68 16 20 C 0.05 0.36 6.49 86.64 0.56 0.92 16 21 C 0.04 0.21 8.23 72.35 0.60 0.80 16 22 O -0.34 -7.27 11.09 -47.40 -0.53 -7.80 16 23 C 0.63 18.35 8.77 129.91 1.14 19.49 16 24 O -0.56 -22.39 14.75 19.66 0.29 -22.10 16 25 C -0.18 -6.32 8.93 22.39 0.20 -6.12 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 28 H 0.04 1.66 7.45 -2.39 -0.02 1.64 16 29 H 0.34 14.14 7.81 -89.70 -0.70 13.44 16 30 H -0.03 -2.08 7.44 -2.39 -0.02 -2.10 16 31 H -0.01 -0.73 8.06 -2.39 -0.02 -0.75 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.13 3.48 7.24 -2.91 -0.02 3.46 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.17 1.45 7.31 -2.91 -0.02 1.43 16 36 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.12 5.00 5.22 -2.91 -0.02 4.99 16 Total: -1.00 -84.44 334.83 2.41 -82.03 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.36 Total: 15.25 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.23 Total: -7.83 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -4.96 Total: -106.99 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.24 Total: -29.89 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -84.44 2.41 -82.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299733667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.640 kcal (2) G-P(sol) polarization free energy of solvation -84.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds