Wall clock time and date at job start Tue Mar 31 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.51371 * 2 1 4 4 C 1.53301 * 109.51608 * 239.89568 * 2 1 3 5 5 N 1.47149 * 108.41728 * 187.70515 * 4 2 1 6 6 C 1.34775 * 120.98493 * 230.53929 * 5 4 2 7 7 O 1.21590 * 119.99646 * 355.23926 * 6 5 4 8 8 N 1.34770 * 120.00613 * 175.23298 * 6 5 4 9 9 C 1.39955 * 120.00637 * 184.68430 * 8 6 5 10 10 C 1.39291 * 119.94343 * 323.88212 * 9 8 6 11 11 C 1.38486 * 120.42482 * 179.71943 * 10 9 8 12 12 C 1.37681 * 120.32509 * 0.55011 * 11 10 9 13 13 C 1.40739 * 119.88259 * 359.72593 * 12 11 10 14 14 C 1.41403 * 120.21357 * 180.02562 * 13 12 11 15 15 H 1.08008 * 120.00065 * 208.97761 * 14 13 12 16 16 C 1.39932 * 120.00188 * 28.97140 * 14 13 12 17 17 N 1.30835 * 119.99315 * 10.30386 * 16 14 13 18 18 Si 1.86799 * 120.00284 * 190.30145 * 16 14 13 19 19 H 1.48503 * 109.47016 * 60.00181 * 18 16 14 20 20 H 1.48499 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47150 * 300.00246 * 18 16 14 22 22 C 1.38226 * 119.94925 * 144.15037 * 9 8 6 23 23 C 1.47226 * 117.98692 * 50.51806 * 5 4 2 24 24 C 1.53292 * 108.40768 * 309.48529 * 23 5 4 25 25 O 1.42961 * 109.55462 * 120.12210 * 2 1 3 26 26 H 1.08996 * 109.47436 * 180.10414 * 1 2 3 27 27 H 1.08999 * 109.47369 * 300.10416 * 1 2 3 28 28 H 1.09004 * 109.47404 * 60.10665 * 1 2 3 29 29 H 1.09004 * 109.67859 * 307.44699 * 4 2 1 30 30 H 1.08996 * 109.68152 * 67.96318 * 4 2 1 31 31 H 0.97001 * 119.99528 * 4.68640 * 8 6 5 32 32 H 1.07999 * 119.78423 * 359.97130 * 10 9 8 33 33 H 1.08002 * 119.83627 * 180.25239 * 11 10 9 34 34 H 1.07997 * 120.05967 * 179.70189 * 12 11 10 35 35 H 0.97003 * 119.99260 * 179.97438 * 17 16 14 36 36 H 1.08006 * 120.16072 * 0.02562 * 22 9 8 37 37 H 1.09001 * 109.67251 * 189.75687 * 23 5 4 38 38 H 1.08997 * 109.70835 * 69.23598 * 23 5 4 39 39 H 1.09000 * 109.51285 * 292.38386 * 24 23 5 40 40 H 1.08997 * 109.55771 * 172.25338 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5014 -0.8746 -1.1354 6 6 4.3183 -0.5015 -2.1403 7 8 3.8492 -0.1142 -3.1931 8 7 5.6550 -0.5575 -1.9783 9 6 6.5026 -0.0785 -2.9839 10 6 6.1571 -0.2464 -4.3228 11 6 6.9855 0.2287 -5.3257 12 6 8.1661 0.8627 -5.0100 13 6 8.5311 1.0345 -3.6617 14 6 9.7418 1.6852 -3.3295 15 1 10.2578 1.4318 -2.4152 16 6 10.2713 2.6573 -4.1855 17 7 9.5562 3.1099 -5.1832 18 14 11.9992 3.3088 -3.9035 19 1 12.9705 2.1887 -3.9883 20 1 12.3208 4.3231 -4.9394 21 1 12.0795 3.9329 -2.5585 22 6 7.6837 0.5554 -2.6468 23 6 4.0417 -1.4440 0.1102 24 6 3.4322 -0.6842 1.2940 25 8 2.0084 -0.6761 1.1652 26 1 -0.3634 -1.0276 0.0019 27 1 -0.3634 0.5154 0.8890 28 1 -0.3634 0.5122 -0.8910 29 1 1.5765 -1.7078 -1.3210 30 1 1.8017 -0.1398 -2.1378 31 1 6.0298 -0.9297 -1.1648 32 1 5.2353 -0.7468 -4.5802 33 1 6.7063 0.0969 -6.3606 34 1 8.8112 1.2273 -5.7957 35 1 9.9231 3.7840 -5.7763 36 1 7.9548 0.6819 -1.6090 37 1 5.1262 -1.3350 0.1233 38 1 3.7781 -2.4995 0.1766 39 1 3.8032 0.3407 1.2986 40 1 3.7107 -1.1765 2.2257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334725341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:40 Heat of formation + Delta-G solvation = -41.285453 kcal Electronic energy + Delta-G solvation = -22836.487698 eV Core-core repulsion = 19423.427033 eV Total energy + Delta-G solvation = -3413.060665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57570 -38.88539 -37.22224 -34.75327 -34.52504 -33.26605 -32.75460 -29.79362 -28.98515 -28.35421 -26.10473 -25.18658 -23.62065 -21.95980 -21.00719 -20.78731 -19.38641 -18.24827 -17.52383 -16.73541 -15.94351 -15.68615 -15.35768 -15.30832 -15.01228 -14.64790 -14.48241 -13.96799 -13.67779 -13.05135 -12.91481 -12.83833 -12.51494 -12.28389 -12.11726 -11.93606 -11.61142 -11.44971 -11.17850 -11.12987 -10.93661 -10.85511 -10.52161 -10.29146 -10.18415 -9.57002 -9.50784 -9.24921 -8.92453 -8.56978 -7.41265 -6.89708 -6.64034 -4.35689 2.61611 2.83912 2.86460 3.08737 3.11261 3.23599 3.46384 3.59837 3.95969 4.07481 4.47421 4.69301 4.74481 4.77135 4.86400 4.92282 5.06628 5.32264 5.37736 5.49488 5.56592 5.59878 5.68985 5.75321 5.90255 6.24319 6.35982 6.57955 6.72036 6.86076 6.90676 6.96043 7.06722 7.22805 7.33167 7.64265 7.78510 8.05589 8.09927 8.23253 8.36713 8.64959 8.87100 8.93153 9.01568 10.28349 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027891 B = 0.003375 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.649806 B = 8294.162049 C = 8744.019224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 H 0.064 0.936 4 C 0.104 3.896 5 N -0.639 5.639 6 C 0.705 3.295 7 O -0.567 6.567 8 N -0.679 5.679 9 C 0.162 3.838 10 C -0.220 4.220 11 C -0.099 4.099 12 C -0.161 4.161 13 C 0.122 3.878 14 C -0.467 4.467 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.803 5.803 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.240 4.240 23 C 0.076 3.924 24 C 0.049 3.951 25 O -0.379 6.379 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.394 0.606 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.279 0.721 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.904 -6.528 10.874 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.082 0.918 4 C -0.020 4.020 5 N -0.378 5.378 6 C 0.407 3.593 7 O -0.443 6.443 8 N -0.327 5.327 9 C 0.070 3.930 10 C -0.241 4.241 11 C -0.118 4.118 12 C -0.181 4.181 13 C 0.119 3.881 14 C -0.498 4.498 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.429 5.429 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.262 4.262 23 C -0.048 4.048 24 C -0.028 4.028 25 O -0.298 6.298 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.230 0.770 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.376 -6.139 10.034 16.363 hybrid contribution 1.195 0.340 0.433 1.316 sum -10.180 -5.799 10.466 15.710 Atomic orbital electron populations 1.21715 0.92176 1.03174 1.02905 1.22547 0.95514 0.95602 0.85050 0.91797 1.22144 0.78876 1.01531 0.99439 1.47340 1.06435 1.67941 1.16129 1.15843 0.81435 0.78601 0.83385 1.90926 1.74922 1.52961 1.25504 1.42738 1.03829 1.64781 1.21356 1.17270 0.90560 0.98338 0.86827 1.20487 1.02065 1.10624 0.90898 1.20632 0.95288 0.99103 0.96786 1.21432 0.97268 1.02208 0.97191 1.17358 0.91502 0.88557 0.90716 1.19450 1.05731 1.18398 1.06188 0.90681 1.25862 0.98816 0.95605 0.93970 1.69801 1.36346 1.23305 1.13496 0.86328 0.82258 0.78922 0.78889 1.18960 1.20410 1.19172 1.20734 0.96658 1.10678 0.98121 1.22324 0.99240 0.98514 0.84705 1.22949 0.81442 1.00411 0.98047 1.87936 1.20707 1.77534 1.43581 0.91569 0.91494 0.90594 0.91114 0.87944 0.76993 0.87558 0.89018 0.86110 0.90971 0.88812 0.89434 0.90489 0.92437 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.15 0.36 -0.78 16 2 C 0.07 0.76 3.40 -26.58 -0.09 0.66 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.10 1.27 5.91 -3.53 -0.02 1.25 16 5 N -0.64 -8.96 3.02 -177.95 -0.54 -9.50 16 6 C 0.71 13.15 8.16 -86.93 -0.71 12.44 16 7 O -0.57 -12.83 13.32 5.29 0.07 -12.76 16 8 N -0.68 -12.59 5.25 -14.27 -0.07 -12.66 16 9 C 0.16 3.74 6.27 -83.76 -0.53 3.22 16 10 C -0.22 -5.37 8.70 -39.10 -0.34 -5.71 16 11 C -0.10 -2.45 10.02 -39.69 -0.40 -2.85 16 12 C -0.16 -4.28 8.65 -38.84 -0.34 -4.62 16 13 C 0.12 3.26 5.55 -106.85 -0.59 2.66 16 14 C -0.47 -12.39 9.06 -37.74 -0.34 -12.73 16 15 H 0.08 1.89 7.87 -52.48 -0.41 1.47 16 16 C 0.07 1.87 5.26 -17.34 -0.09 1.78 16 17 N -0.80 -21.16 10.83 55.55 0.60 -20.56 16 18 Si 0.91 18.82 29.57 -169.99 -5.03 13.79 16 19 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.24 -5.84 9.71 -38.69 -0.38 -6.22 16 23 C 0.08 0.78 6.63 -3.49 -0.02 0.75 16 24 C 0.05 0.46 6.99 37.31 0.26 0.72 16 25 O -0.38 -4.15 10.39 -35.23 -0.37 -4.52 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.40 7.12 -51.93 -0.37 1.03 16 31 H 0.39 5.83 6.33 -40.82 -0.26 5.57 16 32 H 0.11 2.61 6.28 -52.49 -0.33 2.28 16 33 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.12 3.29 6.21 -52.49 -0.33 2.97 16 35 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 36 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.09 0.80 5.67 -51.93 -0.29 0.50 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -31.81 326.58 -8.99 -40.80 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.35 Total: 9.90 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -3.23 Total: -9.42 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.01 Total: -42.72 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.30 Total: -17.27 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.81 -8.99 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334725341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.481 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds