Wall clock time and date at job start Tue Mar 31 2020 06:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.51371 * 2 1 4 4 C 1.53301 * 109.51608 * 239.89568 * 2 1 3 5 5 N 1.47149 * 108.41728 * 187.70515 * 4 2 1 6 6 C 1.34775 * 120.98493 * 230.53929 * 5 4 2 7 7 O 1.21590 * 119.99646 * 355.23926 * 6 5 4 8 8 N 1.34770 * 120.00613 * 175.23298 * 6 5 4 9 9 C 1.39955 * 120.00637 * 184.68430 * 8 6 5 10 10 C 1.39291 * 119.94343 * 323.88212 * 9 8 6 11 11 C 1.38486 * 120.42482 * 179.71943 * 10 9 8 12 12 C 1.37681 * 120.32509 * 0.55011 * 11 10 9 13 13 C 1.40739 * 119.88259 * 359.72593 * 12 11 10 14 14 C 1.41403 * 120.21357 * 180.02562 * 13 12 11 15 15 H 1.08008 * 120.00065 * 208.97761 * 14 13 12 16 16 C 1.39932 * 120.00188 * 28.97140 * 14 13 12 17 17 N 1.30835 * 119.99315 * 10.30386 * 16 14 13 18 18 Si 1.86799 * 120.00284 * 190.30145 * 16 14 13 19 19 H 1.48503 * 109.47016 * 60.00181 * 18 16 14 20 20 H 1.48499 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47150 * 300.00246 * 18 16 14 22 22 C 1.38226 * 119.94925 * 144.15037 * 9 8 6 23 23 C 1.47226 * 117.98692 * 50.51806 * 5 4 2 24 24 C 1.53292 * 108.40768 * 309.48529 * 23 5 4 25 25 O 1.42961 * 109.55462 * 120.12210 * 2 1 3 26 26 H 1.08996 * 109.47436 * 180.10414 * 1 2 3 27 27 H 1.08999 * 109.47369 * 300.10416 * 1 2 3 28 28 H 1.09004 * 109.47404 * 60.10665 * 1 2 3 29 29 H 1.09004 * 109.67859 * 307.44699 * 4 2 1 30 30 H 1.08996 * 109.68152 * 67.96318 * 4 2 1 31 31 H 0.97001 * 119.99528 * 4.68640 * 8 6 5 32 32 H 1.07999 * 119.78423 * 359.97130 * 10 9 8 33 33 H 1.08002 * 119.83627 * 180.25239 * 11 10 9 34 34 H 1.07997 * 120.05967 * 179.70189 * 12 11 10 35 35 H 0.97003 * 119.99260 * 179.97438 * 17 16 14 36 36 H 1.08006 * 120.16072 * 0.02562 * 22 9 8 37 37 H 1.09001 * 109.67251 * 189.75687 * 23 5 4 38 38 H 1.08997 * 109.70835 * 69.23598 * 23 5 4 39 39 H 1.09000 * 109.51285 * 292.38386 * 24 23 5 40 40 H 1.08997 * 109.55771 * 172.25338 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5014 -0.8746 -1.1354 6 6 4.3183 -0.5015 -2.1403 7 8 3.8492 -0.1142 -3.1931 8 7 5.6550 -0.5575 -1.9783 9 6 6.5026 -0.0785 -2.9839 10 6 6.1571 -0.2464 -4.3228 11 6 6.9855 0.2287 -5.3257 12 6 8.1661 0.8627 -5.0100 13 6 8.5311 1.0345 -3.6617 14 6 9.7418 1.6852 -3.3295 15 1 10.2578 1.4318 -2.4152 16 6 10.2713 2.6573 -4.1855 17 7 9.5562 3.1099 -5.1832 18 14 11.9992 3.3088 -3.9035 19 1 12.9705 2.1887 -3.9883 20 1 12.3208 4.3231 -4.9394 21 1 12.0795 3.9329 -2.5585 22 6 7.6837 0.5554 -2.6468 23 6 4.0417 -1.4440 0.1102 24 6 3.4322 -0.6842 1.2940 25 8 2.0084 -0.6761 1.1652 26 1 -0.3634 -1.0276 0.0019 27 1 -0.3634 0.5154 0.8890 28 1 -0.3634 0.5122 -0.8910 29 1 1.5765 -1.7078 -1.3210 30 1 1.8017 -0.1398 -2.1378 31 1 6.0298 -0.9297 -1.1648 32 1 5.2353 -0.7468 -4.5802 33 1 6.7063 0.0969 -6.3606 34 1 8.8112 1.2273 -5.7957 35 1 9.9231 3.7840 -5.7763 36 1 7.9548 0.6819 -1.6090 37 1 5.1262 -1.3350 0.1233 38 1 3.7781 -2.4995 0.1766 39 1 3.8032 0.3407 1.2986 40 1 3.7107 -1.1765 2.2257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334725341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:39 Heat of formation + Delta-G solvation = -61.040285 kcal Electronic energy + Delta-G solvation = -22837.344331 eV Core-core repulsion = 19423.427033 eV Total energy + Delta-G solvation = -3413.917298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87752 -40.10436 -38.93420 -36.23596 -35.95560 -34.81569 -33.83958 -31.75382 -30.24213 -29.66717 -27.30985 -27.06977 -24.50728 -23.34542 -22.84140 -22.14215 -20.81533 -19.69477 -19.15630 -17.74514 -17.36823 -17.05759 -16.92993 -16.40973 -16.31859 -16.18241 -15.76254 -15.35490 -15.06770 -14.65678 -14.44423 -14.07137 -13.77458 -13.53042 -13.18657 -13.06480 -12.92948 -12.87849 -12.76839 -12.68901 -12.31987 -12.20303 -11.96602 -11.72925 -11.44471 -11.27186 -11.17860 -11.06443 -10.72208 -9.68853 -9.38268 -8.74899 -8.53386 -6.36833 0.92958 0.97941 1.39931 1.43138 1.53191 1.54883 2.06032 2.23838 2.70485 2.78191 2.80873 3.62648 3.70509 3.87745 3.97098 4.00008 4.13424 4.30745 4.39011 4.48120 4.64927 4.67702 4.71218 4.80905 4.87993 4.98330 4.99992 5.02219 5.11770 5.14285 5.24296 5.33395 5.37930 5.67004 5.75921 5.94803 6.09678 6.10493 6.15385 6.34642 6.68460 6.83411 6.94662 7.01040 7.44717 8.40218 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027891 B = 0.003375 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.649806 B = 8294.162049 C = 8744.019224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 H 0.052 0.948 4 C 0.100 3.900 5 N -0.631 5.631 6 C 0.700 3.300 7 O -0.613 6.613 8 N -0.670 5.670 9 C 0.173 3.827 10 C -0.232 4.232 11 C -0.101 4.101 12 C -0.188 4.188 13 C 0.095 3.905 14 C -0.497 4.497 15 H 0.082 0.918 16 C 0.030 3.970 17 N -0.836 5.836 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.259 1.259 22 C -0.247 4.247 23 C 0.070 3.930 24 C 0.049 3.951 25 O -0.385 6.385 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.413 0.587 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.286 0.714 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 -7.052 13.066 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 H 0.070 0.930 4 C -0.023 4.023 5 N -0.369 5.369 6 C 0.403 3.597 7 O -0.492 6.492 8 N -0.320 5.320 9 C 0.080 3.920 10 C -0.254 4.254 11 C -0.120 4.120 12 C -0.208 4.208 13 C 0.092 3.908 14 C -0.527 4.527 15 H 0.100 0.900 16 C -0.183 4.183 17 N -0.463 5.463 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.183 1.183 22 C -0.269 4.269 23 C -0.053 4.053 24 C -0.028 4.028 25 O -0.304 6.304 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.253 0.747 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.414 -6.705 12.301 18.071 hybrid contribution 1.073 0.444 -0.193 1.177 sum -10.341 -6.261 12.108 17.110 Atomic orbital electron populations 1.21719 0.90175 1.03936 1.03692 1.22529 0.97032 0.94544 0.84151 0.93035 1.22323 0.77871 1.02373 0.99750 1.47406 1.06745 1.66609 1.16176 1.16017 0.81489 0.78451 0.83774 1.90892 1.75644 1.54958 1.27744 1.42508 1.03673 1.64650 1.21169 1.17257 0.90498 0.96837 0.87430 1.20597 1.01927 1.11159 0.91696 1.20834 0.94767 0.98422 0.97972 1.21367 0.98151 1.04139 0.97112 1.17740 0.92463 0.89205 0.91368 1.19782 1.06405 1.19351 1.07202 0.90011 1.26802 1.02936 0.95349 0.93242 1.69887 1.38300 1.23788 1.14318 0.85168 0.76501 0.78382 0.79104 1.18251 1.19641 1.18323 1.20889 0.96828 1.10622 0.98568 1.22665 1.00003 0.99541 0.83053 1.23118 0.80555 1.00304 0.98873 1.87943 1.21652 1.77406 1.43373 0.90801 0.90749 0.89806 0.89521 0.89844 0.74718 0.87762 0.87382 0.87628 0.90358 0.87024 0.88298 0.88506 0.93150 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.57 71.98 0.69 -1.25 16 2 C 0.08 1.49 3.40 30.69 0.10 1.59 16 3 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.10 2.34 5.91 86.36 0.51 2.85 16 5 N -0.63 -16.80 3.02 -835.17 -2.52 -19.32 16 6 C 0.70 25.74 8.16 179.06 1.46 27.20 16 7 O -0.61 -28.07 13.32 -4.00 -0.05 -28.12 16 8 N -0.67 -24.19 5.25 -317.34 -1.67 -25.86 16 9 C 0.17 8.01 6.27 38.09 0.24 8.24 16 10 C -0.23 -11.53 8.70 22.58 0.20 -11.34 16 11 C -0.10 -5.14 10.02 22.20 0.22 -4.91 16 12 C -0.19 -10.31 8.65 22.75 0.20 -10.11 16 13 C 0.10 5.20 5.55 -21.31 -0.12 5.08 16 14 C -0.50 -26.66 9.06 23.46 0.21 -26.44 16 15 H 0.08 4.11 7.87 -2.91 -0.02 4.09 16 16 C 0.03 1.53 5.26 85.25 0.45 1.98 16 17 N -0.84 -44.86 10.83 21.82 0.24 -44.63 16 18 Si 0.99 38.24 29.57 68.60 2.03 40.27 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 22 C -0.25 -12.06 9.71 22.85 0.22 -11.84 16 23 C 0.07 1.22 6.63 86.34 0.57 1.80 16 24 C 0.05 0.76 6.99 72.08 0.50 1.26 16 25 O -0.38 -7.42 10.39 -148.98 -1.55 -8.96 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.30 7.12 -2.39 -0.02 2.28 16 31 H 0.41 11.42 6.33 -92.71 -0.59 10.83 16 32 H 0.10 5.20 6.28 -2.91 -0.02 5.19 16 33 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 34 H 0.11 6.02 6.21 -2.91 -0.02 6.00 16 35 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 36 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 37 H 0.10 1.50 5.67 -2.39 -0.01 1.49 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.06 326.58 2.41 -67.66 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.47 Total: 34.86 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 5.46 Total: -15.89 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -3.95 Total: -89.80 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.60 Total: -37.09 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -70.06 2.41 -67.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334725341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.616 kcal (2) G-P(sol) polarization free energy of solvation -70.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds