Wall clock time and date at job start Tue Mar 31 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.70644 * 2 1 4 4 C 1.53293 * 109.68321 * 239.46632 * 2 1 3 5 5 O 1.42958 * 109.26610 * 188.00157 * 4 2 1 6 6 C 1.42957 * 114.16884 * 62.55119 * 5 4 2 7 7 C 1.53298 * 109.22520 * 297.42373 * 6 5 4 8 8 N 1.47146 * 108.38334 * 52.30017 * 7 6 5 9 9 C 1.34774 * 120.98092 * 129.48015 * 8 7 6 10 10 O 1.21590 * 119.99813 * 174.30038 * 9 8 7 11 11 N 1.34770 * 119.99973 * 354.30009 * 9 8 7 12 12 C 1.39963 * 119.99754 * 184.84438 * 11 9 8 13 13 C 1.39295 * 119.94566 * 144.55844 * 12 11 9 14 14 C 1.38486 * 120.42838 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32040 * 359.97438 * 14 13 12 16 16 C 1.40741 * 119.88116 * 0.02562 * 15 14 13 17 17 C 1.41415 * 120.20443 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99713 * 145.98278 * 17 16 15 19 19 C 1.39929 * 120.00184 * 325.98082 * 17 16 15 20 20 N 1.30837 * 120.00140 * 2.59920 * 19 17 16 21 21 Si 1.86794 * 120.00103 * 182.60040 * 19 17 16 22 22 H 1.48504 * 109.47337 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47351 * 120.00022 * 21 19 17 24 24 H 1.48507 * 109.47144 * 239.99994 * 21 19 17 25 25 C 1.38229 * 119.94827 * 324.28063 * 12 11 9 26 26 H 1.09004 * 109.46895 * 189.78638 * 1 2 3 27 27 H 1.08997 * 109.47275 * 309.79344 * 1 2 3 28 28 H 1.09000 * 109.47118 * 69.79625 * 1 2 3 29 29 H 1.08999 * 109.51352 * 68.04936 * 4 2 1 30 30 H 1.09006 * 109.51539 * 307.94550 * 4 2 1 31 31 H 1.08993 * 109.51233 * 57.34724 * 6 5 4 32 32 H 1.09005 * 109.51280 * 177.49740 * 6 5 4 33 33 H 1.08995 * 109.68192 * 172.02726 * 7 6 5 34 34 H 1.09004 * 109.68014 * 292.57580 * 7 6 5 35 35 H 0.96990 * 120.00286 * 4.83910 * 11 9 8 36 36 H 1.07999 * 119.78332 * 359.97438 * 13 12 11 37 37 H 1.07996 * 119.83564 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.05462 * 180.02562 * 15 14 13 39 39 H 0.96995 * 120.00382 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.16092 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0463 -0.7333 -1.2432 5 8 3.4635 -0.8921 -1.1426 6 6 3.8858 -1.6905 -0.0346 7 6 3.4648 -1.0057 1.2707 8 7 2.0268 -0.7036 1.1934 9 6 1.1884 -1.0610 2.1863 10 8 0.0240 -0.7126 2.1536 11 7 1.6408 -1.8045 3.2153 12 6 0.7500 -2.2610 4.1935 13 6 0.9396 -3.5114 4.7774 14 6 0.0646 -3.9728 5.7466 15 6 -1.0029 -3.1995 6.1443 16 6 -1.2070 -1.9340 5.5631 17 6 -2.3009 -1.1338 5.9667 18 1 -2.2027 -0.0586 5.9930 19 6 -3.5105 -1.7351 6.3320 20 7 -3.6139 -3.0392 6.3491 21 14 -4.9776 -0.6758 6.7953 22 1 -4.6037 0.7581 6.6971 23 1 -6.1042 -0.9585 5.8700 24 1 -5.3913 -0.9847 8.1877 25 6 -0.3131 -1.4680 4.5828 26 1 -0.3633 -1.0128 0.1747 27 1 -0.3634 0.6577 0.7896 28 1 -0.3633 0.3549 -0.9644 29 1 1.8073 -0.1524 -2.1340 30 1 1.5741 -1.7135 -1.3102 31 1 3.4202 -2.6741 -0.0962 32 1 4.9703 -1.7983 -0.0559 33 1 3.6554 -1.6712 2.1125 34 1 4.0279 -0.0811 1.3983 35 1 2.5837 -2.0232 3.2779 36 1 1.7744 -4.1250 4.4723 37 1 0.2209 -4.9436 6.1933 38 1 -1.6824 -3.5634 6.9008 39 1 -4.4524 -3.4560 6.6019 40 1 -0.4582 -0.4964 4.1342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334731312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:52 Heat of formation + Delta-G solvation = -25.287235 kcal Electronic energy + Delta-G solvation = -23354.375263 eV Core-core repulsion = 19942.008334 eV Total energy + Delta-G solvation = -3412.366930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72813 -38.75699 -37.24002 -34.86955 -34.65236 -33.31428 -32.23068 -29.75439 -28.99837 -27.55093 -26.37470 -25.23322 -23.17884 -22.63706 -21.07734 -20.57576 -19.24011 -18.01939 -17.41711 -16.53925 -16.17295 -15.70448 -15.33780 -15.13554 -14.99699 -14.68950 -14.48943 -14.00528 -13.67253 -12.92176 -12.89898 -12.76193 -12.30130 -12.10150 -11.99231 -11.74471 -11.65556 -11.23641 -11.14282 -11.10283 -10.94342 -10.56330 -10.43659 -10.34323 -9.97998 -9.76569 -9.25871 -9.03901 -8.66725 -8.47924 -7.32853 -6.83136 -6.53399 -4.32228 2.63776 2.80208 2.96781 3.14679 3.19818 3.24577 3.57140 3.64890 4.03326 4.09732 4.51613 4.75010 4.76367 4.82125 4.90979 5.02245 5.19197 5.30724 5.46511 5.53446 5.62920 5.71835 5.80252 6.22576 6.24909 6.34458 6.39044 6.68479 6.81707 6.82745 6.89290 7.07966 7.16669 7.27989 7.38188 7.71254 7.81477 8.02821 8.17253 8.30909 8.40198 8.74101 8.94531 9.03175 9.06717 10.37376 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.004156 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.873106 B = 6736.343077 C = 7625.400969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.131 3.869 3 H 0.075 0.925 4 C 0.050 3.950 5 O -0.381 6.381 6 C 0.048 3.952 7 C 0.077 3.923 8 N -0.637 5.637 9 C 0.702 3.298 10 O -0.551 6.551 11 N -0.682 5.682 12 C 0.157 3.843 13 C -0.252 4.252 14 C -0.099 4.099 15 C -0.161 4.161 16 C 0.113 3.887 17 C -0.458 4.458 18 H 0.075 0.925 19 C 0.071 3.929 20 N -0.813 5.813 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.198 4.198 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.391 0.609 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.276 0.724 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 2.277 -10.515 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.027 3.973 3 H 0.093 0.907 4 C -0.028 4.028 5 O -0.299 6.299 6 C -0.030 4.030 7 C -0.047 4.047 8 N -0.378 5.378 9 C 0.404 3.596 10 O -0.426 6.426 11 N -0.331 5.331 12 C 0.065 3.935 13 C -0.274 4.274 14 C -0.118 4.118 15 C -0.181 4.181 16 C 0.110 3.890 17 C -0.490 4.490 18 H 0.093 0.907 19 C -0.144 4.144 20 N -0.440 5.440 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.219 4.219 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.226 0.774 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.197 2.451 -10.644 15.642 hybrid contribution -0.259 -0.007 0.341 0.428 sum 10.938 2.443 -10.304 15.224 Atomic orbital electron populations 1.22105 0.91509 1.04992 1.00914 1.21748 0.96837 0.95282 0.83444 0.90707 1.23162 0.81169 1.00553 0.97909 1.87934 1.22333 1.71983 1.47683 1.22969 1.00673 0.93757 0.85609 1.22298 0.82254 1.01183 0.98981 1.47429 1.06992 1.63064 1.20275 1.15916 0.84685 0.79463 0.79501 1.91016 1.15802 1.58158 1.77656 1.42828 1.10692 1.54978 1.24553 1.17268 0.92512 0.93404 0.90321 1.20085 1.04384 0.95688 1.07249 1.20516 0.95642 0.98097 0.97539 1.21605 0.97310 0.96698 1.02528 1.17575 0.90696 0.92354 0.88351 1.19532 0.95511 0.94583 1.39325 0.90707 1.25841 1.00403 0.95196 0.92944 1.69772 1.26829 1.09974 1.37452 0.86168 0.80574 0.80906 0.78434 1.18613 1.20024 1.20041 1.21233 0.98940 1.01026 1.00745 0.91132 0.89683 0.93681 0.87704 0.92487 0.92509 0.87710 0.89535 0.90552 0.77360 0.89456 0.89014 0.85424 0.91321 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.65 37.16 0.28 -1.70 16 2 C 0.13 1.65 3.68 -67.41 -0.25 1.41 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.05 0.53 6.27 37.31 0.23 0.76 16 5 O -0.38 -4.19 10.74 -35.23 -0.38 -4.57 16 6 C 0.05 0.43 6.98 37.31 0.26 0.69 16 7 C 0.08 0.78 6.64 -3.54 -0.02 0.75 16 8 N -0.64 -8.95 3.02 -170.42 -0.51 -9.47 16 9 C 0.70 13.00 7.91 -86.93 -0.69 12.31 16 10 O -0.55 -12.33 9.59 5.29 0.05 -12.28 16 11 N -0.68 -12.40 5.25 -14.27 -0.07 -12.48 16 12 C 0.16 3.57 6.28 -83.75 -0.53 3.05 16 13 C -0.25 -5.55 9.97 -39.10 -0.39 -5.94 16 14 C -0.10 -2.32 10.02 -39.69 -0.40 -2.71 16 15 C -0.16 -4.27 8.66 -38.84 -0.34 -4.61 16 16 C 0.11 3.14 5.55 -106.85 -0.59 2.54 16 17 C -0.46 -12.77 9.05 -37.74 -0.34 -13.11 16 18 H 0.07 2.03 7.85 -52.49 -0.41 1.62 16 19 C 0.07 1.86 5.41 -17.34 -0.09 1.76 16 20 N -0.81 -21.83 10.61 55.55 0.59 -21.24 16 21 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 22 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.20 -5.16 8.43 -38.69 -0.33 -5.49 16 26 H 0.07 1.20 6.88 -51.93 -0.36 0.85 16 27 H 0.08 1.45 6.72 -51.93 -0.35 1.10 16 28 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.76 5.66 -51.93 -0.29 0.47 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 5.56 6.33 -40.82 -0.26 5.31 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.13 3.49 6.14 -52.49 -0.32 3.17 16 39 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.11 3.07 6.25 -52.48 -0.33 2.74 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -31.60 319.80 -8.98 -40.58 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.26 Total: 10.18 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.19 Total: -10.29 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.00 Total: -43.18 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.33 Total: -16.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.60 -8.98 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334731312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.293 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds