Wall clock time and date at job start Tue Mar 31 2020 06:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.70644 * 2 1 4 4 C 1.53293 * 109.68321 * 239.46632 * 2 1 3 5 5 O 1.42958 * 109.26610 * 188.00157 * 4 2 1 6 6 C 1.42957 * 114.16884 * 62.55119 * 5 4 2 7 7 C 1.53298 * 109.22520 * 297.42373 * 6 5 4 8 8 N 1.47146 * 108.38334 * 52.30017 * 7 6 5 9 9 C 1.34774 * 120.98092 * 129.48015 * 8 7 6 10 10 O 1.21590 * 119.99813 * 174.30038 * 9 8 7 11 11 N 1.34770 * 119.99973 * 354.30009 * 9 8 7 12 12 C 1.39963 * 119.99754 * 184.84438 * 11 9 8 13 13 C 1.39295 * 119.94566 * 144.55844 * 12 11 9 14 14 C 1.38486 * 120.42838 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32040 * 359.97438 * 14 13 12 16 16 C 1.40741 * 119.88116 * 0.02562 * 15 14 13 17 17 C 1.41415 * 120.20443 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99713 * 145.98278 * 17 16 15 19 19 C 1.39929 * 120.00184 * 325.98082 * 17 16 15 20 20 N 1.30837 * 120.00140 * 2.59920 * 19 17 16 21 21 Si 1.86794 * 120.00103 * 182.60040 * 19 17 16 22 22 H 1.48504 * 109.47337 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47351 * 120.00022 * 21 19 17 24 24 H 1.48507 * 109.47144 * 239.99994 * 21 19 17 25 25 C 1.38229 * 119.94827 * 324.28063 * 12 11 9 26 26 H 1.09004 * 109.46895 * 189.78638 * 1 2 3 27 27 H 1.08997 * 109.47275 * 309.79344 * 1 2 3 28 28 H 1.09000 * 109.47118 * 69.79625 * 1 2 3 29 29 H 1.08999 * 109.51352 * 68.04936 * 4 2 1 30 30 H 1.09006 * 109.51539 * 307.94550 * 4 2 1 31 31 H 1.08993 * 109.51233 * 57.34724 * 6 5 4 32 32 H 1.09005 * 109.51280 * 177.49740 * 6 5 4 33 33 H 1.08995 * 109.68192 * 172.02726 * 7 6 5 34 34 H 1.09004 * 109.68014 * 292.57580 * 7 6 5 35 35 H 0.96990 * 120.00286 * 4.83910 * 11 9 8 36 36 H 1.07999 * 119.78332 * 359.97438 * 13 12 11 37 37 H 1.07996 * 119.83564 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.05462 * 180.02562 * 15 14 13 39 39 H 0.96995 * 120.00382 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.16092 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0463 -0.7333 -1.2432 5 8 3.4635 -0.8921 -1.1426 6 6 3.8858 -1.6905 -0.0346 7 6 3.4648 -1.0057 1.2707 8 7 2.0268 -0.7036 1.1934 9 6 1.1884 -1.0610 2.1863 10 8 0.0240 -0.7126 2.1536 11 7 1.6408 -1.8045 3.2153 12 6 0.7500 -2.2610 4.1935 13 6 0.9396 -3.5114 4.7774 14 6 0.0646 -3.9728 5.7466 15 6 -1.0029 -3.1995 6.1443 16 6 -1.2070 -1.9340 5.5631 17 6 -2.3009 -1.1338 5.9667 18 1 -2.2027 -0.0586 5.9930 19 6 -3.5105 -1.7351 6.3320 20 7 -3.6139 -3.0392 6.3491 21 14 -4.9776 -0.6758 6.7953 22 1 -4.6037 0.7581 6.6971 23 1 -6.1042 -0.9585 5.8700 24 1 -5.3913 -0.9847 8.1877 25 6 -0.3131 -1.4680 4.5828 26 1 -0.3633 -1.0128 0.1747 27 1 -0.3634 0.6577 0.7896 28 1 -0.3633 0.3549 -0.9644 29 1 1.8073 -0.1524 -2.1340 30 1 1.5741 -1.7135 -1.3102 31 1 3.4202 -2.6741 -0.0962 32 1 4.9703 -1.7983 -0.0559 33 1 3.6554 -1.6712 2.1125 34 1 4.0279 -0.0811 1.3983 35 1 2.5837 -2.0232 3.2779 36 1 1.7744 -4.1250 4.4723 37 1 0.2209 -4.9436 6.1933 38 1 -1.6824 -3.5634 6.9008 39 1 -4.4524 -3.4560 6.6019 40 1 -0.4582 -0.4964 4.1342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334731312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:52 Heat of formation + Delta-G solvation = -45.784914 kcal Electronic energy + Delta-G solvation = -23355.264109 eV Core-core repulsion = 19942.008334 eV Total energy + Delta-G solvation = -3413.255776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00966 -40.01966 -38.86753 -36.43958 -35.88827 -35.03467 -33.46492 -31.71189 -30.30457 -29.03884 -27.36095 -27.22383 -24.20311 -23.89806 -22.83422 -22.23608 -20.66693 -19.59321 -18.89291 -17.67656 -17.36208 -17.19558 -16.74613 -16.41990 -16.38785 -15.98161 -15.83466 -15.38755 -15.18865 -14.66062 -14.49448 -13.97464 -13.76164 -13.67563 -13.40680 -13.00679 -12.91846 -12.88311 -12.61415 -12.50371 -12.22360 -12.16865 -11.98213 -11.75926 -11.62017 -11.26096 -11.10294 -10.83219 -10.25702 -9.60092 -9.28879 -8.66215 -8.48350 -6.40027 0.93448 1.02544 1.35526 1.46302 1.47592 1.51934 2.13689 2.23385 2.78837 2.82266 2.83839 3.65462 3.71344 3.87619 3.97384 4.03893 4.17626 4.26166 4.47661 4.51651 4.60327 4.61949 4.73646 4.80186 4.82681 5.04854 5.07537 5.12967 5.13763 5.16591 5.29534 5.39878 5.59377 5.70792 5.84271 6.00230 6.06494 6.10293 6.17799 6.40516 6.72899 6.92009 6.98369 7.03321 7.57109 8.43008 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.004156 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.873106 B = 6736.343077 C = 7625.400969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.126 3.874 3 H 0.088 0.912 4 C 0.058 3.942 5 O -0.388 6.388 6 C 0.048 3.952 7 C 0.070 3.930 8 N -0.630 5.630 9 C 0.694 3.306 10 O -0.598 6.598 11 N -0.671 5.671 12 C 0.166 3.834 13 C -0.238 4.238 14 C -0.097 4.097 15 C -0.186 4.186 16 C 0.082 3.918 17 C -0.502 4.502 18 H 0.062 0.938 19 C 0.029 3.971 20 N -0.841 5.841 21 Si 0.986 3.014 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.258 1.258 25 C -0.222 4.222 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.412 0.588 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.284 0.716 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.342 1.666 -11.832 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.023 3.977 3 H 0.105 0.895 4 C -0.019 4.019 5 O -0.306 6.306 6 C -0.029 4.029 7 C -0.052 4.052 8 N -0.370 5.370 9 C 0.397 3.603 10 O -0.476 6.476 11 N -0.322 5.322 12 C 0.072 3.928 13 C -0.260 4.260 14 C -0.116 4.116 15 C -0.206 4.206 16 C 0.079 3.921 17 C -0.533 4.533 18 H 0.080 0.920 19 C -0.182 4.182 20 N -0.469 5.469 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.193 1.193 24 H -0.182 1.182 25 C -0.244 4.244 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.149 0.851 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.252 0.748 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.508 1.832 -11.996 18.159 hybrid contribution -0.770 0.157 0.645 1.016 sum 12.739 1.988 -11.351 17.178 Atomic orbital electron populations 1.21893 0.93230 1.02175 1.01263 1.21937 0.95491 0.96320 0.83946 0.89453 1.23128 0.81135 1.00273 0.97385 1.87939 1.22073 1.72261 1.48344 1.23148 1.02580 0.93017 0.84188 1.22653 0.79515 1.02577 1.00499 1.47500 1.08333 1.61936 1.19237 1.16177 0.84647 0.79280 0.80221 1.91018 1.18214 1.59663 1.78713 1.42584 1.11186 1.54863 1.23596 1.17314 0.91924 0.93197 0.90359 1.20511 1.04732 0.95197 1.05513 1.20882 0.94447 0.98899 0.97345 1.21540 0.98766 0.97050 1.03290 1.17892 0.91443 0.93424 0.89343 1.19726 0.97241 0.94241 1.42069 0.91952 1.26679 1.02670 0.96565 0.92302 1.69834 1.27937 1.11288 1.37874 0.85107 0.76630 0.78700 0.78870 1.18845 1.19287 1.18234 1.21159 1.00827 1.00986 1.01417 0.94349 0.93152 0.90541 0.85150 0.93161 0.92802 0.84399 0.88067 0.88955 0.74774 0.84972 0.85780 0.87098 0.90550 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 7.65 71.98 0.55 -3.22 16 2 C 0.13 3.03 3.68 44.96 0.17 3.19 16 3 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.06 1.08 6.27 72.08 0.45 1.53 16 5 O -0.39 -7.16 10.74 -148.98 -1.60 -8.76 16 6 C 0.05 0.68 6.98 72.08 0.50 1.19 16 7 C 0.07 1.18 6.64 86.36 0.57 1.76 16 8 N -0.63 -16.85 3.02 -811.36 -2.45 -19.30 16 9 C 0.69 25.74 7.91 179.06 1.42 27.16 16 10 O -0.60 -28.07 9.59 -4.00 -0.04 -28.10 16 11 N -0.67 -23.62 5.25 -317.33 -1.67 -25.28 16 12 C 0.17 7.50 6.28 38.09 0.24 7.74 16 13 C -0.24 -9.93 9.97 22.58 0.23 -9.70 16 14 C -0.10 -4.43 10.02 22.20 0.22 -4.21 16 15 C -0.19 -10.15 8.66 22.75 0.20 -9.96 16 16 C 0.08 4.76 5.55 -21.31 -0.12 4.64 16 17 C -0.50 -29.71 9.05 23.46 0.21 -29.50 16 18 H 0.06 3.66 7.85 -2.91 -0.02 3.64 16 19 C 0.03 1.60 5.41 85.25 0.46 2.06 16 20 N -0.84 -46.73 10.61 21.82 0.23 -46.50 16 21 Si 0.99 41.82 29.56 68.60 2.03 43.85 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 C -0.22 -12.13 8.43 22.85 0.19 -11.94 16 26 H 0.04 1.36 6.88 -2.39 -0.02 1.34 16 27 H 0.05 1.82 6.72 -2.39 -0.02 1.80 16 28 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 29 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.10 1.39 5.66 -2.39 -0.01 1.38 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.41 10.55 6.33 -92.72 -0.59 9.97 16 36 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 38 H 0.11 6.33 6.14 -2.91 -0.02 6.31 16 39 H 0.28 14.24 8.30 -92.71 -0.77 13.47 16 40 H 0.09 5.27 6.25 -2.91 -0.02 5.25 16 Total: -1.00 -74.03 319.80 2.27 -71.76 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.48 Total: 31.58 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 5.29 Total: -19.24 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -3.89 Total: -91.08 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.64 Total: -36.87 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -74.03 2.27 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334731312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.971 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds