Wall clock time and date at job start Tue Mar 31 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46907 * 2 1 4 4 C 1.50701 * 109.47015 * 239.99906 * 2 1 3 5 5 H 1.07999 * 119.99483 * 239.99880 * 4 2 1 6 6 C 1.37878 * 119.99914 * 59.99948 * 4 2 1 7 7 N 1.31516 * 120.00048 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99618 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47287 * 90.00100 * 8 6 4 10 10 H 1.48503 * 109.47150 * 210.00105 * 8 6 4 11 11 H 1.48504 * 109.47492 * 329.99983 * 8 6 4 12 12 N 1.46503 * 109.47010 * 119.99408 * 2 1 3 13 13 C 1.46505 * 119.99621 * 60.00423 * 12 2 1 14 14 C 1.34766 * 120.00443 * 239.99760 * 12 2 1 15 15 O 1.21598 * 119.99763 * 0.02562 * 14 12 2 16 16 N 1.34777 * 120.00468 * 180.02562 * 14 12 2 17 17 C 1.39939 * 120.00218 * 184.43042 * 16 14 12 18 18 C 1.39037 * 120.08007 * 325.35905 * 17 16 14 19 19 C 1.38123 * 119.67987 * 180.02562 * 18 17 16 20 20 C 1.38009 * 120.43498 * 0.19802 * 19 18 17 21 21 C 1.39313 * 120.38724 * 0.02562 * 20 19 18 22 22 C 1.38317 * 120.08410 * 145.38871 * 17 16 14 23 23 C 1.51633 * 132.17525 * 359.00905 * 22 17 16 24 24 C 1.54717 * 101.91314 * 195.89384 * 23 22 17 25 25 O 1.36151 * 129.85963 * 179.52598 * 21 20 19 26 26 H 1.09000 * 109.47065 * 300.00155 * 1 2 3 27 27 H 1.08999 * 109.46853 * 59.99971 * 1 2 3 28 28 H 1.08993 * 109.46648 * 180.02562 * 1 2 3 29 29 H 0.96993 * 119.99457 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47059 * 269.99861 * 13 12 2 31 31 H 1.09004 * 109.46817 * 29.99812 * 13 12 2 32 32 H 1.08999 * 109.47123 * 149.99572 * 13 12 2 33 33 H 0.96998 * 119.99459 * 4.43162 * 16 14 12 34 34 H 1.07990 * 120.16014 * 359.97438 * 18 17 16 35 35 H 1.08002 * 119.78347 * 180.18916 * 19 18 17 36 36 H 1.08002 * 119.81046 * 180.02562 * 20 19 18 37 37 H 1.08995 * 110.94559 * 314.04537 * 23 22 17 38 38 H 1.09000 * 110.94099 * 77.70544 * 23 22 17 39 39 H 1.09000 * 110.75080 * 216.41340 * 24 23 22 40 40 H 1.08996 * 110.75113 * 93.05496 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0078 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0184 -0.6905 1.1963 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0867 1.1287 1.8911 16 7 3.2429 -0.6710 3.1836 17 6 3.9693 0.0331 4.1505 18 6 4.8280 1.0576 3.7679 19 6 5.5414 1.7468 4.7291 20 6 5.4100 1.4221 6.0640 21 6 4.5561 0.3945 6.4586 22 6 3.8353 -0.2887 5.4890 23 6 2.9851 -1.3176 6.2085 24 6 3.0498 -0.8186 7.6716 25 8 4.2880 -0.0878 7.7033 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 0.7096 1.1617 -3.4844 30 1 0.7376 -2.1443 1.9994 31 1 1.5296 -2.5968 0.4709 32 1 2.4629 -2.5818 1.9865 33 1 3.0630 -1.6163 3.3052 34 1 4.9373 1.3126 2.7243 35 1 6.2066 2.5448 4.4341 36 1 5.9723 1.9679 6.8072 37 1 1.9603 -1.3044 5.8375 38 1 3.4180 -2.3137 6.1166 39 1 3.0800 -1.6588 8.3652 40 1 2.2077 -0.1632 7.8937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335344380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:45 Heat of formation + Delta-G solvation = -19.602306 kcal Electronic energy + Delta-G solvation = -23177.918654 eV Core-core repulsion = 19765.798241 eV Total energy + Delta-G solvation = -3412.120413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.19290 -39.79817 -37.39484 -35.46153 -34.44414 -32.86998 -32.09255 -29.71788 -29.36211 -28.14469 -26.19562 -25.24760 -23.60397 -22.80647 -21.75387 -20.81600 -19.20052 -18.09764 -17.37065 -16.62467 -16.30494 -16.26663 -15.54962 -15.35161 -14.90296 -14.77413 -14.14095 -13.52704 -13.35757 -13.23260 -13.02389 -12.75908 -12.57849 -12.45166 -11.88631 -11.80332 -11.67475 -11.55457 -11.20674 -11.09105 -10.95334 -10.85380 -10.70607 -10.31187 -10.19701 -9.96762 -9.36916 -9.14571 -8.46368 -8.24984 -7.91188 -7.56218 -6.10242 -4.18428 1.35988 1.51897 3.11078 3.22825 3.24356 3.32092 3.35247 3.62574 3.98679 4.32014 4.37556 4.48070 4.53319 4.83975 5.04049 5.21142 5.21473 5.27703 5.43503 5.51647 5.57017 5.64842 5.69425 5.83992 5.90112 6.18989 6.28650 6.41149 6.53750 6.68336 6.69682 6.77976 6.90584 6.99883 7.12920 7.31517 7.42258 7.64854 7.78100 8.02953 8.17500 8.57491 8.82132 9.15095 9.48521 10.95064 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.003752 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.483666 B = 7460.592518 C = 7869.503633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.602 5.602 13 C 0.084 3.916 14 C 0.696 3.304 15 O -0.576 6.576 16 N -0.694 5.694 17 C 0.231 3.769 18 C -0.147 4.147 19 C -0.068 4.068 20 C -0.163 4.163 21 C 0.118 3.882 22 C -0.217 4.217 23 C -0.104 4.104 24 C 0.054 3.946 25 O -0.307 6.307 26 H 0.011 0.989 27 H 0.094 0.906 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.402 0.598 34 H 0.151 0.849 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.593 -5.490 16.924 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.337 5.337 13 C -0.060 4.060 14 C 0.398 3.602 15 O -0.453 6.453 16 N -0.343 5.343 17 C 0.134 3.866 18 C -0.168 4.168 19 C -0.087 4.087 20 C -0.183 4.183 21 C 0.073 3.927 22 C -0.221 4.221 23 C -0.141 4.141 24 C -0.021 4.021 25 O -0.222 6.222 26 H 0.030 0.970 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.239 0.761 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.731 -4.529 16.715 17.715 hybrid contribution -0.053 -1.191 -0.887 1.485 sum 3.678 -5.719 15.828 17.227 Atomic orbital electron populations 1.22101 0.98158 0.99381 1.00855 1.18918 0.90701 0.94365 0.78820 0.91652 1.21319 1.31943 1.13107 0.90275 0.92254 1.24882 0.94926 0.94959 0.98944 1.69878 1.36288 1.22467 1.23827 0.86484 0.79168 0.79286 0.82377 1.20628 1.21065 1.19944 1.47625 1.50803 1.11501 1.23754 1.21551 0.98251 0.83526 1.02697 1.15989 0.79652 0.84986 0.79532 1.90870 1.62543 1.15472 1.76452 1.42984 1.57377 1.12791 1.21170 1.16761 0.91037 0.93593 0.85245 1.21416 0.96043 0.97485 1.01825 1.20778 0.98041 0.98618 0.91229 1.20155 1.03396 0.98191 0.96529 1.19209 0.96517 0.93679 0.83318 1.20363 1.06190 1.03120 0.92450 1.21667 1.00528 0.98082 0.93811 1.23776 0.85563 0.95643 0.97082 1.86811 1.39761 1.68047 1.27548 0.97008 0.88715 0.95193 0.92626 0.93808 0.89531 0.93634 0.76138 0.83187 0.84943 0.85787 0.89382 0.89597 0.87828 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.12 16 2 C 0.27 6.85 2.64 -69.08 -0.18 6.67 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -13.98 7.99 -34.44 -0.28 -14.26 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.60 -12.64 2.75 -181.00 -0.50 -13.14 16 13 C 0.08 1.34 9.24 59.85 0.55 1.90 16 14 C 0.70 14.58 8.13 -86.93 -0.71 13.87 16 15 O -0.58 -14.16 13.08 5.28 0.07 -14.09 16 16 N -0.69 -11.34 5.19 -14.32 -0.07 -11.41 16 17 C 0.23 3.71 6.29 -83.83 -0.53 3.18 16 18 C -0.15 -2.45 8.71 -39.33 -0.34 -2.79 16 19 C -0.07 -0.93 10.01 -39.71 -0.40 -1.33 16 20 C -0.16 -2.14 10.06 -39.27 -0.39 -2.53 16 21 C 0.12 1.63 7.03 -38.98 -0.27 1.36 16 22 C -0.22 -3.01 6.20 -103.93 -0.64 -3.65 16 23 C -0.10 -1.04 7.09 -26.52 -0.19 -1.23 16 24 C 0.05 0.50 8.01 38.06 0.30 0.80 16 25 O -0.31 -3.89 11.11 -20.22 -0.22 -4.11 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.47 7.02 -51.93 -0.36 1.11 16 32 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 33 H 0.40 5.31 6.52 -40.82 -0.27 5.04 16 34 H 0.15 2.84 6.21 -52.49 -0.33 2.52 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -31.60 327.27 -8.28 -39.89 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.26 Total: 5.82 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.84 Total: 0.53 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.05 Total: -48.67 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.16 Total: -18.20 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.60 -8.28 -39.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335344380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.283 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds