Wall clock time and date at job start Tue Mar 31 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46907 * 2 1 4 4 C 1.50701 * 109.47015 * 239.99906 * 2 1 3 5 5 H 1.07999 * 119.99483 * 239.99880 * 4 2 1 6 6 C 1.37878 * 119.99914 * 59.99948 * 4 2 1 7 7 N 1.31516 * 120.00048 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99618 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47287 * 90.00100 * 8 6 4 10 10 H 1.48503 * 109.47150 * 210.00105 * 8 6 4 11 11 H 1.48504 * 109.47492 * 329.99983 * 8 6 4 12 12 N 1.46503 * 109.47010 * 119.99408 * 2 1 3 13 13 C 1.46505 * 119.99621 * 60.00423 * 12 2 1 14 14 C 1.34766 * 120.00443 * 239.99760 * 12 2 1 15 15 O 1.21598 * 119.99763 * 0.02562 * 14 12 2 16 16 N 1.34777 * 120.00468 * 180.02562 * 14 12 2 17 17 C 1.39939 * 120.00218 * 184.43042 * 16 14 12 18 18 C 1.39037 * 120.08007 * 325.35905 * 17 16 14 19 19 C 1.38123 * 119.67987 * 180.02562 * 18 17 16 20 20 C 1.38009 * 120.43498 * 0.19802 * 19 18 17 21 21 C 1.39313 * 120.38724 * 0.02562 * 20 19 18 22 22 C 1.38317 * 120.08410 * 145.38871 * 17 16 14 23 23 C 1.51633 * 132.17525 * 359.00905 * 22 17 16 24 24 C 1.54717 * 101.91314 * 195.89384 * 23 22 17 25 25 O 1.36151 * 129.85963 * 179.52598 * 21 20 19 26 26 H 1.09000 * 109.47065 * 300.00155 * 1 2 3 27 27 H 1.08999 * 109.46853 * 59.99971 * 1 2 3 28 28 H 1.08993 * 109.46648 * 180.02562 * 1 2 3 29 29 H 0.96993 * 119.99457 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47059 * 269.99861 * 13 12 2 31 31 H 1.09004 * 109.46817 * 29.99812 * 13 12 2 32 32 H 1.08999 * 109.47123 * 149.99572 * 13 12 2 33 33 H 0.96998 * 119.99459 * 4.43162 * 16 14 12 34 34 H 1.07990 * 120.16014 * 359.97438 * 18 17 16 35 35 H 1.08002 * 119.78347 * 180.18916 * 19 18 17 36 36 H 1.08002 * 119.81046 * 180.02562 * 20 19 18 37 37 H 1.08995 * 110.94559 * 314.04537 * 23 22 17 38 38 H 1.09000 * 110.94099 * 77.70544 * 23 22 17 39 39 H 1.09000 * 110.75080 * 216.41340 * 24 23 22 40 40 H 1.08996 * 110.75113 * 93.05496 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0078 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0184 -0.6905 1.1963 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0867 1.1287 1.8911 16 7 3.2429 -0.6710 3.1836 17 6 3.9693 0.0331 4.1505 18 6 4.8280 1.0576 3.7679 19 6 5.5414 1.7468 4.7291 20 6 5.4100 1.4221 6.0640 21 6 4.5561 0.3945 6.4586 22 6 3.8353 -0.2887 5.4890 23 6 2.9851 -1.3176 6.2085 24 6 3.0498 -0.8186 7.6716 25 8 4.2880 -0.0878 7.7033 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 0.7096 1.1617 -3.4844 30 1 0.7376 -2.1443 1.9994 31 1 1.5296 -2.5968 0.4709 32 1 2.4629 -2.5818 1.9865 33 1 3.0630 -1.6163 3.3052 34 1 4.9373 1.3126 2.7243 35 1 6.2066 2.5448 4.4341 36 1 5.9723 1.9679 6.8072 37 1 1.9603 -1.3044 5.8375 38 1 3.4180 -2.3137 6.1166 39 1 3.0800 -1.6588 8.3652 40 1 2.2077 -0.1632 7.8937 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335344380.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:45 Heat of formation + Delta-G solvation = -39.369191 kcal Electronic energy + Delta-G solvation = -23178.775810 eV Core-core repulsion = 19765.798241 eV Total energy + Delta-G solvation = -3412.977569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.26495 -41.22421 -38.61700 -37.13407 -35.87106 -34.68317 -33.13851 -31.39221 -30.45295 -29.35776 -27.64059 -27.29411 -24.66544 -23.99101 -23.00544 -22.17902 -20.75253 -19.45189 -18.73835 -18.24759 -17.59581 -17.30825 -17.04965 -16.49330 -16.40764 -16.31111 -15.71186 -15.00102 -14.59862 -14.36035 -14.27932 -14.09204 -13.89176 -13.55680 -13.54131 -13.15915 -12.97916 -12.86138 -12.71958 -12.62247 -12.60925 -12.22791 -12.14041 -12.11283 -11.90244 -11.29371 -11.21196 -10.90376 -10.51421 -9.51985 -9.22937 -8.93036 -8.13985 -6.30531 0.26242 0.37431 1.42068 1.43910 1.53240 1.68899 2.11616 2.32956 2.42565 2.79586 3.02940 3.14263 3.51966 3.69420 4.06874 4.17479 4.20873 4.31701 4.38818 4.51923 4.55827 4.66228 4.70902 4.79333 4.87821 4.89181 4.91951 4.96178 5.05714 5.20239 5.25950 5.42549 5.46663 5.52795 5.54308 5.66176 5.74831 5.96276 6.14894 6.20792 6.25446 6.76758 7.03824 7.36365 7.59130 8.90328 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.003752 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.483666 B = 7460.592518 C = 7869.503633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.278 3.722 3 H 0.011 0.989 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.610 5.610 13 C 0.079 3.921 14 C 0.691 3.309 15 O -0.623 6.623 16 N -0.674 5.674 17 C 0.204 3.796 18 C -0.175 4.175 19 C -0.067 4.067 20 C -0.160 4.160 21 C 0.111 3.889 22 C -0.216 4.216 23 C -0.102 4.102 24 C 0.051 3.949 25 O -0.316 6.316 26 H 0.018 0.982 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.265 0.735 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.418 0.582 34 H 0.116 0.884 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -7.816 18.938 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.176 3.824 3 H 0.029 0.971 4 C -0.577 4.577 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.344 5.344 13 C -0.063 4.063 14 C 0.393 3.607 15 O -0.504 6.504 16 N -0.324 5.324 17 C 0.108 3.892 18 C -0.196 4.196 19 C -0.085 4.085 20 C -0.179 4.179 21 C 0.065 3.935 22 C -0.220 4.220 23 C -0.139 4.139 24 C -0.023 4.023 25 O -0.230 6.230 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.134 0.866 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.156 0.844 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.805 -6.919 18.787 20.379 hybrid contribution -0.040 -0.439 -1.370 1.439 sum 3.765 -7.359 17.417 19.279 Atomic orbital electron populations 1.21877 0.97017 1.00186 0.99886 1.18487 0.91465 0.92021 0.80457 0.97131 1.21573 1.31955 1.13149 0.91050 0.92028 1.25712 0.95066 0.95606 1.01949 1.70023 1.37304 1.23778 1.24452 0.85449 0.78804 0.78240 0.78454 1.19182 1.21255 1.19665 1.47474 1.50881 1.13342 1.22685 1.21816 1.00786 0.80565 1.03159 1.16152 0.79526 0.84560 0.80424 1.90842 1.64074 1.17795 1.77684 1.42588 1.56706 1.13319 1.19804 1.16911 0.91793 0.94340 0.86121 1.21312 0.98177 0.99250 1.00890 1.20977 0.97732 0.98659 0.91150 1.20461 1.02953 0.97963 0.96549 1.19461 0.96346 0.93675 0.83993 1.20655 1.06235 1.03762 0.91337 1.21823 1.00408 0.97970 0.93731 1.24108 0.84469 0.96571 0.97195 1.86811 1.41320 1.68242 1.26648 0.96331 0.91263 0.93292 0.92618 0.91351 0.90469 0.90103 0.74247 0.86609 0.82843 0.83259 0.88484 0.87476 0.84441 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.97 71.98 0.65 -5.64 16 2 C 0.28 14.46 2.64 44.25 0.12 14.57 16 3 H 0.01 0.67 6.90 -2.39 -0.02 0.65 16 4 C -0.54 -29.02 7.99 25.60 0.20 -28.81 16 5 H 0.06 3.21 7.33 -2.91 -0.02 3.19 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 8 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 N -0.61 -25.79 2.75 -844.81 -2.33 -28.12 16 13 C 0.08 2.38 9.24 127.77 1.18 3.56 16 14 C 0.69 29.72 8.13 179.06 1.46 31.18 16 15 O -0.62 -32.59 13.08 -4.02 -0.05 -32.65 16 16 N -0.67 -21.76 5.19 -317.47 -1.65 -23.40 16 17 C 0.20 6.55 6.29 38.06 0.24 6.79 16 18 C -0.18 -6.07 8.71 22.43 0.20 -5.88 16 19 C -0.07 -1.82 10.01 22.19 0.22 -1.60 16 20 C -0.16 -3.93 10.06 22.47 0.23 -3.71 16 21 C 0.11 2.84 7.03 22.66 0.16 3.00 16 22 C -0.22 -5.60 6.20 -19.41 -0.12 -5.72 16 23 C -0.10 -1.71 7.09 30.73 0.22 -1.49 16 24 C 0.05 0.73 8.01 72.57 0.58 1.31 16 25 O -0.32 -7.02 11.11 -95.27 -1.06 -8.07 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 28 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.61 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.50 7.02 -2.39 -0.02 2.48 16 32 H 0.08 1.83 6.30 -2.39 -0.02 1.81 16 33 H 0.42 10.21 6.52 -92.71 -0.60 9.61 16 34 H 0.12 4.79 6.21 -2.92 -0.02 4.77 16 35 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 36 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -72.39 327.27 3.42 -68.97 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.46 Total: 21.95 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.77 Total: 8.92 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -3.73 Total: -103.86 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.11 Total: -40.72 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -72.39 3.42 -68.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335344380.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.604 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds