Wall clock time and date at job start Tue Mar 31 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.87843 * 2 1 4 4 C 1.54326 * 110.01300 * 121.09745 * 2 1 3 5 5 C 1.55158 * 102.94230 * 141.67858 * 4 2 1 6 6 H 1.09004 * 111.00045 * 82.58028 * 5 4 2 7 7 O 1.42905 * 111.00361 * 206.38523 * 5 4 2 8 8 C 1.55132 * 101.48846 * 324.33573 * 5 4 2 9 9 N 1.47026 * 109.88546 * 238.98304 * 2 1 3 10 10 C 1.34775 * 125.64554 * 61.44940 * 9 2 1 11 11 O 1.21586 * 120.00096 * 0.02562 * 10 9 2 12 12 N 1.34776 * 120.00005 * 180.02562 * 10 9 2 13 13 C 1.39247 * 120.00220 * 175.71245 * 12 10 9 14 14 C 1.39472 * 119.83219 * 215.28676 * 13 12 10 15 15 C 1.36380 * 120.16572 * 179.97438 * 14 13 12 16 16 C 1.40864 * 119.82884 * 0.02604 * 15 14 13 17 17 C 1.41159 * 120.16132 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99624 * 214.78405 * 17 16 15 19 19 C 1.39889 * 120.00012 * 34.78576 * 17 16 15 20 20 N 1.30877 * 120.00097 * 355.55799 * 19 17 16 21 21 Si 1.86799 * 119.99965 * 175.83276 * 19 17 16 22 22 H 1.48505 * 109.47222 * 269.73018 * 21 19 17 23 23 H 1.48507 * 109.47210 * 29.72276 * 21 19 17 24 24 H 1.48496 * 109.47573 * 149.72334 * 21 19 17 25 25 C 1.40863 * 119.67184 * 0.25351 * 16 15 14 26 26 C 1.36370 * 119.83108 * 359.48343 * 25 16 15 27 27 H 1.09000 * 109.46664 * 179.56101 * 1 2 3 28 28 H 1.09000 * 109.46740 * 299.56054 * 1 2 3 29 29 H 1.09002 * 109.46783 * 59.56251 * 1 2 3 30 30 H 1.08997 * 110.72511 * 260.04687 * 4 2 1 31 31 H 1.09006 * 110.71742 * 23.14778 * 4 2 1 32 32 H 0.96701 * 113.99487 * 180.02562 * 7 5 4 33 33 H 1.08993 * 110.49725 * 278.45078 * 8 5 4 34 34 H 1.09001 * 110.34019 * 156.05813 * 8 5 4 35 35 H 0.96998 * 119.99889 * 355.70739 * 12 10 9 36 36 H 1.08004 * 119.91945 * 0.02562 * 14 13 12 37 37 H 1.08004 * 120.08017 * 179.97438 * 15 14 13 38 38 H 0.96999 * 119.99846 * 179.97438 * 20 19 17 39 39 H 1.08007 * 120.08454 * 179.72596 * 25 16 15 40 40 H 1.07999 * 119.91878 * 180.25674 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7490 1.2417 5 6 3.2918 -1.5108 0.6893 6 1 4.1682 -0.8635 0.6565 7 8 3.5549 -2.6858 1.4589 8 6 2.8130 -1.8794 -0.7395 9 7 2.0301 -0.7124 -1.1849 10 6 1.8050 -0.3603 -2.4662 11 8 1.1370 0.6240 -2.7178 12 7 2.3204 -1.0992 -3.4686 13 6 2.0148 -0.7883 -4.7911 14 6 1.8695 -1.8107 -5.7285 15 6 1.5697 -1.5140 -7.0254 16 6 1.4073 -0.1707 -7.4173 17 6 1.0975 0.1445 -8.7579 18 1 1.4951 1.0424 -9.2072 19 6 0.2754 -0.7063 -9.5044 20 7 -0.1355 -1.8371 -8.9894 21 14 -0.2295 -0.2320 -11.2392 22 1 -1.4989 0.5373 -11.1924 23 1 0.8334 0.6041 -11.8530 24 1 -0.4243 -1.4598 -12.0514 25 6 1.5615 0.8567 -6.4661 26 6 1.8560 0.5442 -5.1717 27 1 -0.3633 -1.0277 -0.0079 28 1 -0.3633 0.5070 0.8939 29 1 -0.3633 0.5206 -0.8861 30 1 2.3557 -0.0452 2.0190 31 1 1.3093 -1.4450 1.6197 32 1 4.3175 -3.1947 1.1513 33 1 2.1853 -2.7700 -0.7137 34 1 3.6682 -2.0360 -1.3970 35 1 2.9043 -1.8476 -3.2689 36 1 1.9938 -2.8402 -5.4264 37 1 1.4579 -2.3068 -7.7502 38 1 -0.7059 -2.4269 -9.5069 39 1 1.4429 1.8891 -6.7602 40 1 1.9704 1.3306 -4.4404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335413316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:08 Heat of formation + Delta-G solvation = -48.360578 kcal Electronic energy + Delta-G solvation = -22740.633964 eV Core-core repulsion = 19327.266499 eV Total energy + Delta-G solvation = -3413.367465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45220 -38.63974 -37.20725 -35.86554 -34.41176 -33.05558 -31.51121 -30.17223 -29.51960 -28.61114 -26.04363 -24.94692 -22.81336 -21.63006 -21.19440 -20.41164 -19.22489 -18.02600 -17.72969 -17.25718 -16.45458 -15.81968 -15.21415 -15.07232 -14.55433 -14.18181 -13.91173 -13.83997 -13.37869 -13.28740 -12.82797 -12.66107 -12.56492 -12.09543 -12.05908 -11.77793 -11.64608 -11.32986 -11.17832 -11.11168 -10.98863 -10.93263 -10.69239 -10.47912 -10.01875 -9.49514 -9.43580 -9.19995 -8.85911 -8.57629 -7.50849 -6.80478 -6.58136 -4.30377 2.63867 2.79753 3.10990 3.12172 3.15785 3.18014 3.62589 3.79807 4.00982 4.15535 4.32380 4.49175 4.67894 4.74425 4.95768 5.04443 5.25535 5.34893 5.52591 5.54754 5.60358 5.68095 5.74899 6.02166 6.18328 6.24863 6.40111 6.49264 6.79688 6.93048 7.08060 7.18640 7.22174 7.29438 7.42476 7.68689 7.89512 7.98174 8.12165 8.34047 8.44708 8.67392 8.95050 8.96847 9.10987 10.33170 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036980 B = 0.003157 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.977071 B = 8867.447904 C = 9173.826396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 H 0.076 0.924 4 C -0.120 4.120 5 C 0.092 3.908 6 H 0.076 0.924 7 O -0.557 6.557 8 C 0.070 3.930 9 N -0.636 5.636 10 C 0.715 3.285 11 O -0.570 6.570 12 N -0.665 5.665 13 C 0.022 3.978 14 C -0.123 4.123 15 C -0.140 4.140 16 C 0.098 3.902 17 C -0.462 4.462 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.813 5.813 21 Si 0.915 3.085 22 H -0.271 1.271 23 H -0.263 1.263 24 H -0.279 1.279 25 C -0.204 4.204 26 C -0.086 4.086 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.382 0.618 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.390 0.610 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.277 0.723 39 H 0.095 0.905 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 -2.791 16.499 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.053 3.947 3 H 0.094 0.906 4 C -0.158 4.158 5 C 0.032 3.968 6 H 0.094 0.906 7 O -0.362 6.362 8 C -0.054 4.054 9 N -0.378 5.378 10 C 0.418 3.582 11 O -0.446 6.446 12 N -0.311 5.311 13 C -0.070 4.070 14 C -0.143 4.143 15 C -0.160 4.160 16 C 0.096 3.904 17 C -0.493 4.493 18 H 0.093 0.907 19 C -0.145 4.145 20 N -0.441 5.441 21 Si 0.740 3.260 22 H -0.196 1.196 23 H -0.187 1.187 24 H -0.204 1.204 25 C -0.224 4.224 26 C -0.106 4.106 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.223 0.777 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.277 -2.031 16.493 17.436 hybrid contribution 0.367 -0.572 -0.962 1.178 sum 5.643 -2.602 15.531 16.728 Atomic orbital electron populations 1.22169 0.94507 1.02379 1.03136 1.21324 0.94955 0.95962 0.82500 0.90569 1.22747 0.96888 0.99215 0.96946 1.22969 0.97685 0.86885 0.89292 0.90612 1.86526 1.53786 1.38871 1.56973 1.22949 0.95896 0.90347 0.96229 1.47560 1.56687 1.29424 1.04093 1.15515 0.80270 0.83568 0.78885 1.90903 1.44157 1.27874 1.81687 1.42151 1.50579 1.33963 1.04417 1.17089 1.15125 0.93682 0.81142 1.20286 1.04108 0.95447 0.94479 1.21167 1.02468 0.98020 0.94386 1.17711 0.88514 0.91211 0.92974 1.19487 1.26576 1.07014 0.96211 0.90656 1.25863 0.95037 0.93922 0.99705 1.69768 1.27955 1.08874 1.37492 0.86206 0.79658 0.78723 0.81395 1.19604 1.18742 1.20378 1.20803 1.10750 0.98205 0.92648 1.20420 1.00362 0.94058 0.95778 0.92629 0.91911 0.90481 0.89509 0.89401 0.77071 0.90785 0.90892 0.77660 0.89242 0.85054 0.91225 0.88634 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.11 37.16 0.34 -1.68 16 2 C 0.16 1.84 3.45 -66.95 -0.23 1.61 16 3 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.12 -1.05 6.21 -24.89 -0.15 -1.20 16 5 C 0.09 0.75 4.44 -24.46 -0.11 0.64 16 6 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 7 O -0.56 -4.26 13.47 -35.23 -0.47 -4.73 16 8 C 0.07 0.69 6.36 -2.41 -0.02 0.67 16 9 N -0.64 -8.76 3.06 -168.55 -0.52 -9.27 16 10 C 0.71 13.27 8.11 -86.92 -0.71 12.57 16 11 O -0.57 -12.82 12.79 5.29 0.07 -12.75 16 12 N -0.67 -12.22 5.26 -14.10 -0.07 -12.30 16 13 C 0.02 0.50 6.31 -83.57 -0.53 -0.02 16 14 C -0.12 -2.84 9.90 -39.79 -0.39 -3.24 16 15 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 16 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 17 C -0.46 -12.48 9.02 -37.86 -0.34 -12.82 16 18 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 19 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 20 N -0.81 -21.42 10.60 55.54 0.59 -20.83 16 21 Si 0.92 19.25 29.56 -169.99 -5.03 14.22 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 26 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.22 6.87 -51.93 -0.36 0.86 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.79 7.85 -51.93 -0.41 0.38 16 32 H 0.38 1.29 9.12 45.56 0.42 1.70 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.61 7.23 -51.93 -0.38 0.24 16 35 H 0.39 5.75 7.26 -40.82 -0.30 5.45 16 36 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.13 3.52 6.13 -52.48 -0.32 3.20 16 38 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 39 H 0.10 2.34 8.06 -52.48 -0.42 1.91 16 40 H 0.11 2.65 6.22 -52.49 -0.33 2.32 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -32.23 328.71 -8.97 -41.20 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -4.60 Total: 11.31 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.89 Total: -11.79 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.00 Total: -42.41 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.41 Total: -17.49 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.23 -8.97 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335413316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.162 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds