Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.87843 * 2 1 4 4 C 1.54326 * 110.01300 * 121.09745 * 2 1 3 5 5 C 1.55158 * 102.94230 * 141.67858 * 4 2 1 6 6 H 1.09004 * 111.00045 * 82.58028 * 5 4 2 7 7 O 1.42905 * 111.00361 * 206.38523 * 5 4 2 8 8 C 1.55132 * 101.48846 * 324.33573 * 5 4 2 9 9 N 1.47026 * 109.88546 * 238.98304 * 2 1 3 10 10 C 1.34775 * 125.64554 * 61.44940 * 9 2 1 11 11 O 1.21586 * 120.00096 * 0.02562 * 10 9 2 12 12 N 1.34776 * 120.00005 * 180.02562 * 10 9 2 13 13 C 1.39247 * 120.00220 * 175.71245 * 12 10 9 14 14 C 1.39472 * 119.83219 * 215.28676 * 13 12 10 15 15 C 1.36380 * 120.16572 * 179.97438 * 14 13 12 16 16 C 1.40864 * 119.82884 * 0.02604 * 15 14 13 17 17 C 1.41159 * 120.16132 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99624 * 214.78405 * 17 16 15 19 19 C 1.39889 * 120.00012 * 34.78576 * 17 16 15 20 20 N 1.30877 * 120.00097 * 355.55799 * 19 17 16 21 21 Si 1.86799 * 119.99965 * 175.83276 * 19 17 16 22 22 H 1.48505 * 109.47222 * 269.73018 * 21 19 17 23 23 H 1.48507 * 109.47210 * 29.72276 * 21 19 17 24 24 H 1.48496 * 109.47573 * 149.72334 * 21 19 17 25 25 C 1.40863 * 119.67184 * 0.25351 * 16 15 14 26 26 C 1.36370 * 119.83108 * 359.48343 * 25 16 15 27 27 H 1.09000 * 109.46664 * 179.56101 * 1 2 3 28 28 H 1.09000 * 109.46740 * 299.56054 * 1 2 3 29 29 H 1.09002 * 109.46783 * 59.56251 * 1 2 3 30 30 H 1.08997 * 110.72511 * 260.04687 * 4 2 1 31 31 H 1.09006 * 110.71742 * 23.14778 * 4 2 1 32 32 H 0.96701 * 113.99487 * 180.02562 * 7 5 4 33 33 H 1.08993 * 110.49725 * 278.45078 * 8 5 4 34 34 H 1.09001 * 110.34019 * 156.05813 * 8 5 4 35 35 H 0.96998 * 119.99889 * 355.70739 * 12 10 9 36 36 H 1.08004 * 119.91945 * 0.02562 * 14 13 12 37 37 H 1.08004 * 120.08017 * 179.97438 * 15 14 13 38 38 H 0.96999 * 119.99846 * 179.97438 * 20 19 17 39 39 H 1.08007 * 120.08454 * 179.72596 * 25 16 15 40 40 H 1.07999 * 119.91878 * 180.25674 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7490 1.2417 5 6 3.2918 -1.5108 0.6893 6 1 4.1682 -0.8635 0.6565 7 8 3.5549 -2.6858 1.4589 8 6 2.8130 -1.8794 -0.7395 9 7 2.0301 -0.7124 -1.1849 10 6 1.8050 -0.3603 -2.4662 11 8 1.1370 0.6240 -2.7178 12 7 2.3204 -1.0992 -3.4686 13 6 2.0148 -0.7883 -4.7911 14 6 1.8695 -1.8107 -5.7285 15 6 1.5697 -1.5140 -7.0254 16 6 1.4073 -0.1707 -7.4173 17 6 1.0975 0.1445 -8.7579 18 1 1.4951 1.0424 -9.2072 19 6 0.2754 -0.7063 -9.5044 20 7 -0.1355 -1.8371 -8.9894 21 14 -0.2295 -0.2320 -11.2392 22 1 -1.4989 0.5373 -11.1924 23 1 0.8334 0.6041 -11.8530 24 1 -0.4243 -1.4598 -12.0514 25 6 1.5615 0.8567 -6.4661 26 6 1.8560 0.5442 -5.1717 27 1 -0.3633 -1.0277 -0.0079 28 1 -0.3633 0.5070 0.8939 29 1 -0.3633 0.5206 -0.8861 30 1 2.3557 -0.0452 2.0190 31 1 1.3093 -1.4450 1.6197 32 1 4.3175 -3.1947 1.1513 33 1 2.1853 -2.7700 -0.7137 34 1 3.6682 -2.0360 -1.3970 35 1 2.9043 -1.8476 -3.2689 36 1 1.9938 -2.8402 -5.4264 37 1 1.4579 -2.3068 -7.7502 38 1 -0.7059 -2.4269 -9.5069 39 1 1.4429 1.8891 -6.7602 40 1 1.9704 1.3306 -4.4404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335413316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -70.691891 kcal Electronic energy + Delta-G solvation = -22741.602323 eV Core-core repulsion = 19327.266499 eV Total energy + Delta-G solvation = -3414.335824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73291 -39.94605 -38.74790 -36.75921 -36.11568 -34.81627 -32.72096 -31.44811 -31.07833 -30.38951 -27.03799 -26.67891 -24.11635 -23.13373 -22.60569 -21.82572 -20.60451 -19.33802 -19.14268 -18.42104 -17.93449 -17.09185 -16.94505 -16.40257 -15.81830 -15.54537 -15.15845 -15.09059 -14.66723 -14.46196 -14.15705 -14.14444 -13.95770 -13.60302 -13.45780 -13.23234 -12.98715 -12.79089 -12.76466 -12.55155 -12.47603 -12.06805 -11.84657 -11.64980 -11.38843 -11.25841 -11.12326 -10.92423 -10.63886 -9.73743 -9.46277 -8.68901 -8.49431 -6.31834 0.84016 1.14462 1.39916 1.46455 1.53485 1.55894 2.15485 2.25311 2.81056 2.91322 3.28477 3.53720 3.60659 3.69162 4.01893 4.11846 4.29937 4.36317 4.38904 4.53235 4.56891 4.68441 4.73697 4.88129 4.92912 4.96506 5.07800 5.14297 5.16690 5.27393 5.30969 5.44090 5.45637 5.68853 5.83236 6.04559 6.11974 6.20006 6.39982 6.68806 6.87083 6.97177 6.99488 7.01790 7.60160 8.43504 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036980 B = 0.003157 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.977071 B = 8867.447904 C = 9173.826396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.072 0.928 4 C -0.112 4.112 5 C 0.104 3.896 6 H 0.092 0.908 7 O -0.566 6.566 8 C 0.063 3.937 9 N -0.630 5.630 10 C 0.710 3.290 11 O -0.616 6.616 12 N -0.658 5.658 13 C 0.039 3.961 14 C -0.120 4.120 15 C -0.157 4.157 16 C 0.067 3.933 17 C -0.498 4.498 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.842 5.842 21 Si 0.989 3.011 22 H -0.268 1.268 23 H -0.258 1.258 24 H -0.266 1.266 25 C -0.219 4.219 26 C -0.097 4.097 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.401 0.599 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.410 0.590 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.096 0.904 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -3.980 18.176 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.090 0.910 4 C -0.149 4.149 5 C 0.044 3.956 6 H 0.109 0.891 7 O -0.373 6.373 8 C -0.060 4.060 9 N -0.370 5.370 10 C 0.412 3.588 11 O -0.496 6.496 12 N -0.306 5.306 13 C -0.055 4.055 14 C -0.140 4.140 15 C -0.177 4.177 16 C 0.065 3.935 17 C -0.529 4.529 18 H 0.091 0.909 19 C -0.184 4.184 20 N -0.470 5.470 21 Si 0.810 3.190 22 H -0.194 1.194 23 H -0.182 1.182 24 H -0.190 1.190 25 C -0.239 4.239 26 C -0.117 4.117 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.252 0.748 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.247 0.753 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.224 -3.275 18.247 19.555 hybrid contribution 0.130 -0.248 -1.259 1.290 sum 6.354 -3.523 16.987 18.476 Atomic orbital electron populations 1.22114 0.95205 1.01967 1.02462 1.21557 0.94527 0.96332 0.83021 0.91008 1.22707 0.97182 0.99463 0.95589 1.22836 0.97800 0.87285 0.87681 0.89066 1.86495 1.55146 1.38866 1.56831 1.23259 0.96031 0.88709 0.98000 1.47530 1.56162 1.30458 1.02811 1.15676 0.79913 0.82926 0.80238 1.90876 1.46014 1.29849 1.82839 1.41922 1.51111 1.34704 1.02860 1.17109 1.12546 0.92835 0.82997 1.20512 1.02863 0.97187 0.93468 1.21151 1.03697 0.97314 0.95513 1.18018 0.89741 0.92105 0.93679 1.19719 1.28345 1.07890 0.96965 0.90943 1.26729 0.94350 0.93571 1.03775 1.69830 1.28335 1.09699 1.39155 0.85103 0.79110 0.78762 0.76044 1.19354 1.18228 1.19004 1.20922 1.11481 0.98211 0.93272 1.20510 1.00857 0.95150 0.95176 0.92777 0.89229 0.94536 0.87264 0.89370 0.74797 0.90553 0.89089 0.75263 0.85927 0.86241 0.90518 0.88618 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.83 9.11 71.98 0.66 -3.17 16 2 C 0.15 3.25 3.45 45.34 0.16 3.41 16 3 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.11 -1.58 6.21 31.78 0.20 -1.39 16 5 C 0.10 1.30 4.44 32.06 0.14 1.44 16 6 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 7 O -0.57 -6.39 13.47 -148.98 -2.01 -8.39 16 8 C 0.06 1.04 6.36 86.93 0.55 1.59 16 9 N -0.63 -16.29 3.06 -805.44 -2.47 -18.76 16 10 C 0.71 25.91 8.11 179.06 1.45 27.37 16 11 O -0.62 -28.23 12.79 -3.99 -0.05 -28.29 16 12 N -0.66 -23.31 5.26 -316.78 -1.67 -24.98 16 13 C 0.04 1.77 6.31 38.56 0.24 2.01 16 14 C -0.12 -5.50 9.90 22.13 0.22 -5.28 16 15 C -0.16 -8.32 8.61 22.48 0.19 -8.12 16 16 C 0.07 3.77 5.55 -21.28 -0.12 3.65 16 17 C -0.50 -27.87 9.02 23.39 0.21 -27.66 16 18 H 0.07 3.92 7.85 -2.91 -0.02 3.89 16 19 C 0.03 1.43 5.42 85.23 0.46 1.89 16 20 N -0.84 -45.11 10.60 21.82 0.23 -44.87 16 21 Si 0.99 39.76 29.56 68.60 2.03 41.79 16 22 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 25 C -0.22 -11.72 9.74 22.48 0.22 -11.50 16 26 C -0.10 -4.84 8.61 22.13 0.19 -4.65 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.17 6.87 -2.39 -0.02 1.16 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.29 7.85 -2.38 -0.02 1.27 16 32 H 0.40 1.07 9.12 -74.06 -0.68 0.39 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.19 7.23 -2.39 -0.02 1.18 16 35 H 0.41 11.05 7.26 -92.71 -0.67 10.37 16 36 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 38 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 39 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.11 5.34 6.22 -2.91 -0.02 5.32 16 Total: -1.00 -72.54 328.71 0.57 -71.97 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.27 Total: 31.95 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 4.78 Total: -20.42 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -3.90 Total: -88.61 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -2.06 Total: -36.68 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -72.54 0.57 -71.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335413316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.273 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds