Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.87503 * 2 1 4 4 C 1.54324 * 109.88372 * 238.81505 * 2 1 3 5 5 C 1.55157 * 102.94469 * 262.77647 * 4 2 1 6 6 H 1.09000 * 110.99751 * 82.61146 * 5 4 2 7 7 O 1.42900 * 111.00370 * 206.42173 * 5 4 2 8 8 C 1.55131 * 101.48561 * 324.33423 * 5 4 2 9 9 N 1.47027 * 109.87893 * 121.01143 * 2 1 3 10 10 C 1.34775 * 125.64552 * 300.43686 * 9 2 1 11 11 O 1.21578 * 120.00729 * 0.02562 * 10 9 2 12 12 N 1.34783 * 119.99782 * 180.02562 * 10 9 2 13 13 C 1.39241 * 119.99962 * 175.71371 * 12 10 9 14 14 C 1.39484 * 119.83020 * 215.29256 * 13 12 10 15 15 C 1.36369 * 120.16760 * 179.97438 * 14 13 12 16 16 C 1.40872 * 119.82835 * 0.02562 * 15 14 13 17 17 C 1.41155 * 120.16217 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99678 * 215.06377 * 17 16 15 19 19 C 1.39889 * 120.00308 * 34.78778 * 17 16 15 20 20 N 1.30878 * 119.99984 * 355.55572 * 19 17 16 21 21 Si 1.86807 * 120.00103 * 175.55719 * 19 17 16 22 22 H 1.48500 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46974 * 120.00101 * 21 19 17 24 24 H 1.48498 * 109.47158 * 239.99761 * 21 19 17 25 25 C 1.40867 * 119.67260 * 0.25682 * 16 15 14 26 26 C 1.36374 * 119.82654 * 359.48309 * 25 16 15 27 27 H 1.08997 * 109.47336 * 300.44479 * 1 2 3 28 28 H 1.09003 * 109.46707 * 60.44490 * 1 2 3 29 29 H 1.09004 * 109.47120 * 180.44300 * 1 2 3 30 30 H 1.08997 * 110.71753 * 21.14497 * 4 2 1 31 31 H 1.09001 * 110.71784 * 144.41204 * 4 2 1 32 32 H 0.96696 * 113.99838 * 180.02562 * 7 5 4 33 33 H 1.08995 * 110.49300 * 278.45258 * 8 5 4 34 34 H 1.08998 * 110.33975 * 156.05962 * 8 5 4 35 35 H 0.97004 * 119.99505 * 355.71359 * 12 10 9 36 36 H 1.07999 * 119.91952 * 0.02562 * 14 13 12 37 37 H 1.08003 * 120.09111 * 180.02562 * 15 14 13 38 38 H 0.96999 * 120.00167 * 179.97438 * 20 19 17 39 39 H 1.07997 * 120.08631 * 179.75115 * 25 16 15 40 40 H 1.07997 * 119.91629 * 180.25964 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7515 -1.2415 5 6 2.3519 -2.1706 -0.6891 6 1 1.4453 -2.7748 -0.6568 7 8 3.3681 -2.8172 -1.4579 8 6 2.8613 -1.8455 0.7397 9 7 2.0300 -0.7124 1.1850 10 6 1.7753 -0.3808 2.4663 11 8 1.0768 0.5820 2.7179 12 7 2.2950 -1.1166 3.4689 13 6 2.1064 -0.7233 4.7912 14 6 3.1175 -0.9341 5.7287 15 6 2.9403 -0.5511 7.0254 16 6 1.7322 0.0582 7.4173 17 6 1.5411 0.4569 8.7579 18 1 0.5623 0.3839 9.2086 19 6 2.6206 0.9410 9.5043 20 7 3.8238 0.9431 8.9893 21 14 2.3448 1.5845 11.2363 22 1 0.9049 1.4733 11.5821 23 1 3.1471 0.7835 12.1955 24 1 2.7633 3.0074 11.3081 25 6 0.7134 0.2623 6.4661 26 6 0.9072 -0.1212 5.1718 27 1 -0.3634 0.5207 0.8859 28 1 -0.3633 0.5069 -0.8940 29 1 -0.3633 -1.0277 0.0079 30 1 1.2919 -0.7920 -2.0188 31 1 2.9657 -0.2856 -1.6177 32 1 3.5875 -3.7073 -1.1504 33 1 3.9123 -1.5578 0.7139 34 1 2.7178 -2.7028 1.3973 35 1 2.8004 -1.9201 3.2691 36 1 4.0433 -1.4009 5.4267 37 1 3.7242 -0.7145 7.7502 38 1 4.5722 1.2791 9.5068 39 1 -0.2170 0.7251 6.7601 40 1 0.1288 0.0384 4.4404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335413318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = -47.950668 kcal Electronic energy + Delta-G solvation = -22751.674209 eV Core-core repulsion = 19338.324519 eV Total energy + Delta-G solvation = -3413.349690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47448 -38.65667 -37.20774 -35.86797 -34.41467 -33.06520 -31.54419 -30.03857 -29.52249 -28.61441 -26.06103 -24.98125 -23.02275 -21.60289 -21.13370 -20.29899 -19.25850 -18.14128 -17.74494 -17.24299 -16.36512 -15.57359 -15.38850 -15.12030 -14.59091 -13.94650 -13.88866 -13.79396 -13.63675 -13.33107 -12.92666 -12.73092 -12.58274 -12.14016 -12.00906 -11.70786 -11.59825 -11.33956 -11.25525 -11.13579 -11.02272 -10.85597 -10.71002 -10.46047 -10.00442 -9.49002 -9.42075 -9.19553 -8.87023 -8.58514 -7.50978 -6.80512 -6.58195 -4.30435 2.62815 2.79574 3.11108 3.11593 3.16532 3.18700 3.63851 3.79068 4.00992 4.15125 4.31199 4.49083 4.67490 4.74323 4.93963 5.05930 5.23807 5.33339 5.52472 5.55723 5.60127 5.67764 5.73117 5.97107 6.16880 6.23465 6.38546 6.49046 6.79579 6.92825 7.07986 7.18592 7.22187 7.29268 7.42353 7.68696 7.89342 7.98107 8.12292 8.33930 8.44493 8.67457 8.94948 8.96921 9.10840 10.33089 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.003162 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.709575 B = 8853.412119 C = 9301.665702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.156 3.844 3 H 0.077 0.923 4 C -0.120 4.120 5 C 0.092 3.908 6 H 0.076 0.924 7 O -0.557 6.557 8 C 0.070 3.930 9 N -0.636 5.636 10 C 0.715 3.285 11 O -0.570 6.570 12 N -0.665 5.665 13 C 0.022 3.978 14 C -0.123 4.123 15 C -0.140 4.140 16 C 0.098 3.902 17 C -0.461 4.461 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.813 5.813 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.204 4.204 26 C -0.086 4.086 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.382 0.618 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.390 0.610 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.276 0.724 39 H 0.096 0.904 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.218 -7.470 -16.498 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.052 3.948 3 H 0.096 0.904 4 C -0.158 4.158 5 C 0.033 3.967 6 H 0.093 0.907 7 O -0.362 6.362 8 C -0.055 4.055 9 N -0.377 5.377 10 C 0.418 3.582 11 O -0.446 6.446 12 N -0.311 5.311 13 C -0.070 4.070 14 C -0.143 4.143 15 C -0.160 4.160 16 C 0.096 3.904 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.145 4.145 20 N -0.441 5.441 21 Si 0.740 3.260 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.224 4.224 26 C -0.106 4.106 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.229 0.771 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.223 0.777 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.531 -6.087 -16.494 17.590 hybrid contribution 0.425 -0.553 0.966 1.191 sum -0.106 -6.640 -15.529 16.889 Atomic orbital electron populations 1.22203 0.94635 1.02186 1.03282 1.21326 0.94730 0.96233 0.82515 0.90448 1.22728 1.02528 0.93517 0.97008 1.22960 0.90290 0.94221 0.89274 0.90651 1.86523 1.58590 1.34032 1.57038 1.22964 0.96165 0.90087 0.96242 1.47546 1.54175 1.31945 1.04070 1.15514 0.81183 0.82652 0.78877 1.90898 1.42283 1.29735 1.81680 1.42153 1.57308 1.27240 1.04412 1.17090 0.96228 1.12567 0.81142 1.20287 0.95581 1.03981 0.94482 1.21174 1.00145 1.00326 0.94395 1.17720 0.91255 0.88460 0.93004 1.19518 0.95781 1.37796 0.96156 0.90618 1.25867 0.94529 0.94452 0.99696 1.69774 0.99937 1.37035 1.37344 0.86160 0.79530 0.78854 0.81485 1.18617 1.20058 1.20026 1.20805 1.00828 1.08104 0.92647 1.20416 0.95102 0.99319 0.95774 0.90367 0.91892 0.92803 0.89324 0.89590 0.77078 0.90707 0.90925 0.77657 0.89236 0.85041 0.91278 0.88627 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.06 37.16 0.34 -1.57 16 2 C 0.16 1.83 3.49 -66.95 -0.23 1.60 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.12 -1.05 6.23 -24.90 -0.15 -1.20 16 5 C 0.09 0.76 4.44 -24.46 -0.11 0.65 16 6 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 7 O -0.56 -4.27 13.47 -35.23 -0.47 -4.75 16 8 C 0.07 0.69 6.36 -2.41 -0.02 0.67 16 9 N -0.64 -8.75 3.08 -168.55 -0.52 -9.27 16 10 C 0.71 13.26 8.10 -86.91 -0.70 12.56 16 11 O -0.57 -12.79 12.66 5.30 0.07 -12.72 16 12 N -0.67 -12.22 5.26 -14.10 -0.07 -12.29 16 13 C 0.02 0.51 6.31 -83.57 -0.53 -0.02 16 14 C -0.12 -2.85 9.90 -39.79 -0.39 -3.24 16 15 C -0.14 -3.65 8.62 -39.26 -0.34 -3.99 16 16 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 17 C -0.46 -12.47 9.02 -37.86 -0.34 -12.81 16 18 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 19 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 20 N -0.81 -21.42 10.59 55.54 0.59 -20.83 16 21 Si 0.91 19.25 29.56 -169.99 -5.03 14.22 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.20 -5.25 9.74 -39.26 -0.38 -5.63 16 26 C -0.09 -2.10 8.61 -39.79 -0.34 -2.45 16 27 H 0.08 1.17 6.74 -51.93 -0.35 0.82 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.64 7.83 -51.93 -0.41 0.24 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.38 1.30 9.12 45.56 0.42 1.72 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.61 7.23 -51.93 -0.38 0.24 16 35 H 0.39 5.75 7.27 -40.82 -0.30 5.45 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.13 3.53 6.13 -52.48 -0.32 3.20 16 38 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.11 2.63 6.22 -52.49 -0.33 2.31 16 LS Contribution 328.43 15.07 4.95 4.95 Total: -1.00 -32.23 328.43 -8.97 -41.20 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.59 Total: 11.18 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.89 Total: -11.68 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.00 Total: -42.40 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.41 Total: -17.47 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.23 -8.97 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335413318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.753 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds