Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.87503 * 2 1 4 4 C 1.54324 * 109.88372 * 238.81505 * 2 1 3 5 5 C 1.55157 * 102.94469 * 262.77647 * 4 2 1 6 6 H 1.09000 * 110.99751 * 82.61146 * 5 4 2 7 7 O 1.42900 * 111.00370 * 206.42173 * 5 4 2 8 8 C 1.55131 * 101.48561 * 324.33423 * 5 4 2 9 9 N 1.47027 * 109.87893 * 121.01143 * 2 1 3 10 10 C 1.34775 * 125.64552 * 300.43686 * 9 2 1 11 11 O 1.21578 * 120.00729 * 0.02562 * 10 9 2 12 12 N 1.34783 * 119.99782 * 180.02562 * 10 9 2 13 13 C 1.39241 * 119.99962 * 175.71371 * 12 10 9 14 14 C 1.39484 * 119.83020 * 215.29256 * 13 12 10 15 15 C 1.36369 * 120.16760 * 179.97438 * 14 13 12 16 16 C 1.40872 * 119.82835 * 0.02562 * 15 14 13 17 17 C 1.41155 * 120.16217 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99678 * 215.06377 * 17 16 15 19 19 C 1.39889 * 120.00308 * 34.78778 * 17 16 15 20 20 N 1.30878 * 119.99984 * 355.55572 * 19 17 16 21 21 Si 1.86807 * 120.00103 * 175.55719 * 19 17 16 22 22 H 1.48500 * 109.46916 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46974 * 120.00101 * 21 19 17 24 24 H 1.48498 * 109.47158 * 239.99761 * 21 19 17 25 25 C 1.40867 * 119.67260 * 0.25682 * 16 15 14 26 26 C 1.36374 * 119.82654 * 359.48309 * 25 16 15 27 27 H 1.08997 * 109.47336 * 300.44479 * 1 2 3 28 28 H 1.09003 * 109.46707 * 60.44490 * 1 2 3 29 29 H 1.09004 * 109.47120 * 180.44300 * 1 2 3 30 30 H 1.08997 * 110.71753 * 21.14497 * 4 2 1 31 31 H 1.09001 * 110.71784 * 144.41204 * 4 2 1 32 32 H 0.96696 * 113.99838 * 180.02562 * 7 5 4 33 33 H 1.08995 * 110.49300 * 278.45258 * 8 5 4 34 34 H 1.08998 * 110.33975 * 156.05962 * 8 5 4 35 35 H 0.97004 * 119.99505 * 355.71359 * 12 10 9 36 36 H 1.07999 * 119.91952 * 0.02562 * 14 13 12 37 37 H 1.08003 * 120.09111 * 180.02562 * 15 14 13 38 38 H 0.96999 * 120.00167 * 179.97438 * 20 19 17 39 39 H 1.07997 * 120.08631 * 179.75115 * 25 16 15 40 40 H 1.07997 * 119.91629 * 180.25964 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7515 -1.2415 5 6 2.3519 -2.1706 -0.6891 6 1 1.4453 -2.7748 -0.6568 7 8 3.3681 -2.8172 -1.4579 8 6 2.8613 -1.8455 0.7397 9 7 2.0300 -0.7124 1.1850 10 6 1.7753 -0.3808 2.4663 11 8 1.0768 0.5820 2.7179 12 7 2.2950 -1.1166 3.4689 13 6 2.1064 -0.7233 4.7912 14 6 3.1175 -0.9341 5.7287 15 6 2.9403 -0.5511 7.0254 16 6 1.7322 0.0582 7.4173 17 6 1.5411 0.4569 8.7579 18 1 0.5623 0.3839 9.2086 19 6 2.6206 0.9410 9.5043 20 7 3.8238 0.9431 8.9893 21 14 2.3448 1.5845 11.2363 22 1 0.9049 1.4733 11.5821 23 1 3.1471 0.7835 12.1955 24 1 2.7633 3.0074 11.3081 25 6 0.7134 0.2623 6.4661 26 6 0.9072 -0.1212 5.1718 27 1 -0.3634 0.5207 0.8859 28 1 -0.3633 0.5069 -0.8940 29 1 -0.3633 -1.0277 0.0079 30 1 1.2919 -0.7920 -2.0188 31 1 2.9657 -0.2856 -1.6177 32 1 3.5875 -3.7073 -1.1504 33 1 3.9123 -1.5578 0.7139 34 1 2.7178 -2.7028 1.3973 35 1 2.8004 -1.9201 3.2691 36 1 4.0433 -1.4009 5.4267 37 1 3.7242 -0.7145 7.7502 38 1 4.5722 1.2791 9.5068 39 1 -0.2170 0.7251 6.7601 40 1 0.1288 0.0384 4.4404 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335413318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = -70.277796 kcal Electronic energy + Delta-G solvation = -22752.642386 eV Core-core repulsion = 19338.324519 eV Total energy + Delta-G solvation = -3414.317867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.74751 -39.96443 -38.75588 -36.75575 -36.11725 -34.82119 -32.74768 -31.45087 -30.94186 -30.38508 -27.01005 -26.71061 -24.26559 -23.17122 -22.64675 -21.64429 -20.62728 -19.36169 -19.09560 -18.55476 -17.93796 -17.04315 -16.68572 -16.54057 -15.81965 -15.61254 -15.05159 -14.91188 -14.73395 -14.48877 -14.40491 -14.12861 -13.96574 -13.58188 -13.46736 -13.22768 -12.99627 -12.87077 -12.74295 -12.48923 -12.37921 -12.14381 -11.82087 -11.63787 -11.39494 -11.22992 -11.13577 -10.87965 -10.65380 -9.74679 -9.46373 -8.68940 -8.49474 -6.31906 0.83465 1.14389 1.39961 1.45166 1.54561 1.56541 2.15138 2.25235 2.80887 2.91254 3.30064 3.52555 3.59164 3.68836 3.98572 4.14691 4.31601 4.35596 4.38730 4.53168 4.57546 4.68757 4.79813 4.89335 4.91147 4.97452 5.08502 5.14222 5.14581 5.25807 5.33237 5.44093 5.48085 5.68876 5.83107 6.04566 6.11945 6.19973 6.39928 6.68846 6.86797 6.97157 6.99395 7.01752 7.60051 8.43545 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.003162 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.709575 B = 8853.412119 C = 9301.665702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.061 0.939 4 C -0.111 4.111 5 C 0.105 3.895 6 H 0.091 0.909 7 O -0.566 6.566 8 C 0.062 3.938 9 N -0.630 5.630 10 C 0.710 3.290 11 O -0.615 6.615 12 N -0.658 5.658 13 C 0.039 3.961 14 C -0.120 4.120 15 C -0.157 4.157 16 C 0.067 3.933 17 C -0.498 4.498 18 H 0.072 0.928 19 C 0.027 3.973 20 N -0.842 5.842 21 Si 0.989 3.011 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.270 1.270 25 C -0.219 4.219 26 C -0.096 4.096 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.401 0.599 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.410 0.590 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -8.763 -18.161 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 H 0.080 0.920 4 C -0.149 4.149 5 C 0.045 3.955 6 H 0.109 0.891 7 O -0.374 6.374 8 C -0.060 4.060 9 N -0.369 5.369 10 C 0.413 3.587 11 O -0.495 6.495 12 N -0.306 5.306 13 C -0.055 4.055 14 C -0.140 4.140 15 C -0.177 4.177 16 C 0.064 3.936 17 C -0.529 4.529 18 H 0.090 0.910 19 C -0.184 4.184 20 N -0.470 5.470 21 Si 0.810 3.190 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.195 1.195 25 C -0.239 4.239 26 C -0.117 4.117 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.252 0.748 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.247 0.753 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.293 -7.449 -18.234 19.699 hybrid contribution 0.209 -0.208 1.261 1.295 sum 0.502 -7.657 -16.973 18.627 Atomic orbital electron populations 1.22134 0.94454 1.02492 1.02592 1.21542 0.94974 0.96007 0.83039 0.92039 1.22687 1.03081 0.93499 0.95650 1.22825 0.90881 0.94112 0.87683 0.89142 1.86493 1.58374 1.35598 1.56894 1.23274 0.95667 0.89119 0.97988 1.47517 1.53746 1.32888 1.02795 1.15675 0.80691 0.82157 0.80225 1.90873 1.44161 1.31668 1.82829 1.41924 1.57656 1.28162 1.02854 1.17110 0.95079 1.10304 0.82996 1.20515 0.96788 1.03265 0.93466 1.21157 0.99671 1.01322 0.95523 1.18025 0.92230 0.89602 0.93699 1.19738 0.96401 1.39810 0.96911 0.90981 1.26732 0.93899 0.94050 1.03755 1.69833 1.00719 1.37458 1.39028 0.85054 0.79515 0.78270 0.76165 1.18432 1.18682 1.19504 1.20921 1.00882 1.08796 0.93277 1.20505 0.96064 0.99927 0.95166 0.94377 0.89289 0.91869 0.87150 0.89554 0.74800 0.90423 0.89129 0.75262 0.85909 0.86226 0.90524 0.88635 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.06 71.98 0.65 -2.82 16 2 C 0.15 3.25 3.49 45.34 0.16 3.41 16 3 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -1.60 6.23 31.78 0.20 -1.40 16 5 C 0.11 1.32 4.44 32.06 0.14 1.46 16 6 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 7 O -0.57 -6.42 13.47 -148.98 -2.01 -8.43 16 8 C 0.06 1.04 6.36 86.93 0.55 1.59 16 9 N -0.63 -16.33 3.08 -805.44 -2.48 -18.81 16 10 C 0.71 25.92 8.10 179.05 1.45 27.37 16 11 O -0.62 -28.20 12.66 -3.96 -0.05 -28.25 16 12 N -0.66 -23.30 5.26 -316.78 -1.67 -24.97 16 13 C 0.04 1.77 6.31 38.56 0.24 2.01 16 14 C -0.12 -5.50 9.90 22.13 0.22 -5.28 16 15 C -0.16 -8.31 8.62 22.48 0.19 -8.12 16 16 C 0.07 3.76 5.55 -21.27 -0.12 3.64 16 17 C -0.50 -27.84 9.02 23.39 0.21 -27.63 16 18 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 19 C 0.03 1.42 5.42 85.23 0.46 1.88 16 20 N -0.84 -45.09 10.59 21.82 0.23 -44.86 16 21 Si 0.99 39.78 29.56 68.60 2.03 41.81 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 25 C -0.22 -11.72 9.74 22.48 0.22 -11.50 16 26 C -0.10 -4.82 8.61 22.13 0.19 -4.63 16 27 H 0.04 1.15 6.74 -2.39 -0.02 1.14 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 30 H 0.11 1.15 7.83 -2.39 -0.02 1.13 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.40 1.09 9.12 -74.06 -0.68 0.42 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.20 7.23 -2.39 -0.02 1.18 16 35 H 0.41 11.05 7.27 -92.71 -0.67 10.37 16 36 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.12 6.59 6.13 -2.91 -0.02 6.57 16 38 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 39 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 40 H 0.11 5.34 6.22 -2.91 -0.02 5.32 16 Total: -1.00 -72.52 328.43 0.56 -71.96 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.27 Total: 31.58 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.77 Total: -20.02 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -3.92 Total: -88.64 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -2.06 Total: -36.68 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -72.52 0.56 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335413318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.681 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds