Wall clock time and date at job start Tue Mar 31 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.33332 * 2 1 4 4 C 1.54481 * 110.37082 * 237.62714 * 2 1 3 5 5 C 1.54514 * 104.06179 * 217.19220 * 4 2 1 6 6 H 1.08999 * 110.62706 * 118.70784 * 5 4 2 7 7 N 1.46501 * 110.50817 * 241.35993 * 5 4 2 8 8 C 1.34783 * 119.99646 * 201.09613 * 7 5 4 9 9 O 1.21582 * 120.00223 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99639 * 179.97438 * 8 7 5 11 11 C 1.39956 * 119.99662 * 184.72672 * 10 8 7 12 12 C 1.39289 * 119.94957 * 213.56926 * 11 10 8 13 13 C 1.38485 * 120.43364 * 180.02562 * 12 11 10 14 14 C 1.37690 * 120.31584 * 359.67724 * 13 12 11 15 15 C 1.40738 * 119.88419 * 0.62390 * 14 13 12 16 16 C 1.41412 * 120.20714 * 179.67230 * 15 14 13 17 17 H 1.08000 * 119.99646 * 153.26749 * 16 15 14 18 18 C 1.39932 * 120.00262 * 333.27343 * 16 15 14 19 19 N 1.30822 * 119.99776 * 330.27756 * 18 16 15 20 20 Si 1.86798 * 119.99735 * 150.27643 * 18 16 15 21 21 H 1.48507 * 109.46989 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47364 * 60.00366 * 20 18 16 23 23 H 1.48507 * 109.47327 * 299.99574 * 20 18 16 24 24 C 1.38234 * 119.94771 * 33.59889 * 11 10 8 25 25 C 1.54478 * 104.06474 * 359.97438 * 5 4 2 26 26 O 1.44427 * 110.37129 * 122.25241 * 2 1 3 27 27 H 1.08992 * 109.47058 * 299.20382 * 1 2 3 28 28 H 1.09005 * 109.46881 * 59.20771 * 1 2 3 29 29 H 1.09000 * 109.46886 * 179.20207 * 1 2 3 30 30 H 1.09004 * 110.51001 * 98.55044 * 4 2 1 31 31 H 1.08999 * 110.51555 * 335.83468 * 4 2 1 32 32 H 0.96996 * 120.00672 * 21.09536 * 7 5 4 33 33 H 0.96995 * 120.00509 * 4.72232 * 10 8 7 34 34 H 1.07999 * 119.77963 * 0.02562 * 12 11 10 35 35 H 1.07997 * 119.84242 * 179.97438 * 13 12 11 36 36 H 1.08005 * 120.05455 * 180.32582 * 14 13 12 37 37 H 0.97000 * 120.00299 * 353.46120 * 19 18 16 38 38 H 1.07999 * 120.16255 * 0.02562 * 24 11 10 39 39 H 1.09005 * 110.37117 * 142.80521 * 25 5 4 40 40 H 1.08999 * 110.37675 * 265.04032 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7754 -1.2231 5 6 3.3178 -1.5065 -0.6842 6 1 3.1979 -2.5865 -0.7704 7 7 4.5182 -1.0658 -1.3991 8 6 5.6207 -1.8411 -1.4067 9 8 5.6188 -2.9064 -0.8207 10 7 6.7248 -1.4360 -2.0648 11 6 7.8351 -2.2831 -2.1565 12 6 9.1204 -1.7464 -2.1652 13 6 10.2261 -2.5753 -2.2561 14 6 10.0666 -3.9408 -2.3324 15 6 8.7738 -4.4970 -2.3312 16 6 8.6020 -5.8981 -2.4162 17 1 7.7195 -6.3601 -1.9989 18 6 9.5753 -6.6858 -3.0409 19 7 10.2986 -6.1858 -4.0096 20 14 9.8418 -8.4512 -2.4916 21 1 10.9221 -9.0650 -3.3050 22 1 8.5855 -9.2215 -2.6743 23 1 10.2304 -8.4704 -1.0584 24 6 7.6544 -3.6511 -2.2391 25 6 3.3878 -1.0859 0.8005 26 8 2.0328 -0.7225 1.1450 27 1 -0.3633 0.5014 0.8970 28 1 -0.3633 0.5261 -0.8828 29 1 -0.3633 -1.0276 -0.0143 30 1 2.3430 -0.0861 -2.0214 31 1 1.3276 -1.4937 -1.5756 32 1 4.5196 -0.2162 -1.8670 33 1 6.7500 -0.5573 -2.4749 34 1 9.2556 -0.6769 -2.1005 35 1 11.2183 -2.1490 -2.2624 36 1 10.9321 -4.5837 -2.3979 37 1 10.0979 -5.3034 -4.3590 38 1 6.6582 -4.0682 -2.2333 39 1 3.7245 -1.9202 1.4159 40 1 4.0546 -0.2322 0.9221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335455700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:39 Heat of formation + Delta-G solvation = -61.371181 kcal Electronic energy + Delta-G solvation = -22479.464335 eV Core-core repulsion = 19065.532688 eV Total energy + Delta-G solvation = -3413.931647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45081 -39.33288 -37.44595 -34.86906 -34.40148 -33.09799 -32.37191 -30.12601 -29.67139 -27.72871 -26.20142 -25.04561 -22.74327 -21.70450 -21.13373 -20.86955 -20.18606 -18.34883 -17.94097 -16.90589 -15.91027 -15.73968 -15.66601 -15.14903 -14.64875 -14.55465 -14.19909 -13.99518 -13.62726 -13.45467 -12.91900 -12.75276 -12.50499 -12.25797 -12.15269 -11.86058 -11.78786 -11.51744 -11.38386 -11.04710 -11.00451 -10.52584 -10.39908 -10.32755 -10.05813 -9.70549 -9.56794 -9.14542 -9.02587 -8.87450 -7.61611 -7.21181 -6.97465 -4.37359 2.61215 2.82729 2.89213 3.20739 3.29611 3.41951 3.57648 3.71286 4.07348 4.24196 4.40590 4.46566 4.59108 4.67799 4.89183 4.93702 5.09199 5.27252 5.33476 5.48769 5.54076 5.67331 5.75328 5.77747 5.82013 6.12654 6.32342 6.34224 6.64652 6.66354 6.69864 6.90718 6.98090 7.21339 7.52327 7.72738 7.75604 7.85159 7.93512 8.23145 8.28706 8.39790 8.83938 8.88103 8.97208 10.08047 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.003270 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.441809 B = 8559.678889 C = 9311.355450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.069 0.931 4 C -0.158 4.158 5 C 0.135 3.865 6 H 0.104 0.896 7 N -0.743 5.743 8 C 0.698 3.302 9 O -0.562 6.562 10 N -0.681 5.681 11 C 0.180 3.820 12 C -0.278 4.278 13 C -0.070 4.070 14 C -0.229 4.229 15 C 0.110 3.890 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.044 3.956 19 N -0.792 5.792 20 Si 1.062 2.938 21 H -0.275 1.275 22 H -0.276 1.276 23 H -0.274 1.274 24 C -0.214 4.214 25 C 0.034 3.966 26 O -0.370 6.370 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.393 0.607 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.297 0.703 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 12.348 2.636 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.196 4.196 5 C 0.028 3.972 6 H 0.122 0.878 7 N -0.401 5.401 8 C 0.398 3.602 9 O -0.437 6.437 10 N -0.327 5.327 11 C 0.088 3.912 12 C -0.300 4.300 13 C -0.089 4.089 14 C -0.249 4.249 15 C 0.106 3.894 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.179 4.179 19 N -0.414 5.414 20 Si 0.885 3.115 21 H -0.199 1.199 22 H -0.201 1.201 23 H -0.199 1.199 24 C -0.236 4.236 25 C -0.044 4.044 26 O -0.289 6.289 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.227 0.773 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.922 9.983 3.085 16.618 hybrid contribution -0.772 2.472 -0.382 2.618 sum -13.694 12.455 2.703 18.707 Atomic orbital electron populations 1.21812 0.93056 1.03111 1.02454 1.22974 0.95475 0.95410 0.85051 0.91328 1.23293 0.97348 1.00291 0.98658 1.22104 0.83028 1.01074 0.90958 0.87781 1.45199 1.12406 1.23912 1.58560 1.15994 0.80187 0.84009 0.79991 1.90991 1.82533 1.22342 1.47829 1.42597 1.13707 1.19394 1.56992 1.17268 0.84083 0.89629 1.00236 1.19932 0.90937 0.97361 1.21763 1.20360 0.95989 0.93765 0.98811 1.21103 0.96941 0.93862 1.13009 1.17520 0.90532 0.93101 0.88218 1.20522 1.07680 0.92013 1.34981 0.90552 1.26987 0.91420 1.06883 0.92593 1.70448 1.34823 1.19825 1.16327 0.83698 0.77431 0.73048 0.77285 1.19948 1.20124 1.19926 1.20975 0.98614 0.90653 1.13346 1.23924 0.84027 1.00708 0.95725 1.89182 1.27221 1.74526 1.37932 0.91784 0.91141 0.91592 0.89802 0.89265 0.77258 0.77192 0.89204 0.88898 0.87952 0.88970 0.87351 0.88092 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.52 37.16 0.35 -0.66 16 2 C 0.07 0.59 3.92 -25.95 -0.10 0.49 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.16 -1.30 6.39 -25.16 -0.16 -1.46 16 5 C 0.13 1.57 3.42 -66.36 -0.23 1.35 16 6 H 0.10 1.45 7.67 -51.93 -0.40 1.05 16 7 N -0.74 -9.09 5.12 -57.14 -0.29 -9.38 16 8 C 0.70 12.42 8.30 -86.91 -0.72 11.70 16 9 O -0.56 -12.78 13.72 5.29 0.07 -12.70 16 10 N -0.68 -12.01 5.35 -14.27 -0.08 -12.08 16 11 C 0.18 4.09 6.27 -83.76 -0.53 3.57 16 12 C -0.28 -6.10 9.97 -39.10 -0.39 -6.49 16 13 C -0.07 -1.63 10.02 -39.69 -0.40 -2.03 16 14 C -0.23 -6.00 8.15 -38.84 -0.32 -6.31 16 15 C 0.11 3.04 5.23 -106.85 -0.56 2.48 16 16 C -0.52 -14.61 8.93 -37.74 -0.34 -14.95 16 17 H 0.08 2.14 8.00 -52.49 -0.42 1.72 16 18 C 0.04 1.14 4.80 -17.35 -0.08 1.06 16 19 N -0.79 -21.32 12.41 55.55 0.69 -20.63 16 20 Si 1.06 22.28 30.02 -169.99 -5.10 17.18 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 24 C -0.21 -5.62 8.39 -38.69 -0.32 -5.95 16 25 C 0.03 0.42 7.35 37.93 0.28 0.69 16 26 O -0.37 -4.41 11.35 -35.23 -0.40 -4.81 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 30 H 0.08 0.54 7.65 -51.93 -0.40 0.14 16 31 H 0.09 0.69 7.86 -51.93 -0.41 0.29 16 32 H 0.39 3.43 8.33 -40.82 -0.34 3.09 16 33 H 0.39 5.26 8.83 -40.82 -0.36 4.90 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 36 H 0.10 2.74 6.77 -52.48 -0.36 2.38 16 37 H 0.30 8.20 7.16 -40.82 -0.29 7.90 16 38 H 0.11 2.98 6.40 -52.49 -0.34 2.64 16 39 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -32.24 333.49 -9.08 -41.31 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.48 Total: 12.61 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -3.51 Total: -16.52 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.32 Total: -42.09 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.33 Total: -17.51 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.10 Total: 17.18 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.24 -9.08 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335455700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.060 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds