Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.33332 * 2 1 4 4 C 1.54481 * 110.37082 * 237.62714 * 2 1 3 5 5 C 1.54514 * 104.06179 * 217.19220 * 4 2 1 6 6 H 1.08999 * 110.62706 * 118.70784 * 5 4 2 7 7 N 1.46501 * 110.50817 * 241.35993 * 5 4 2 8 8 C 1.34783 * 119.99646 * 201.09613 * 7 5 4 9 9 O 1.21582 * 120.00223 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99639 * 179.97438 * 8 7 5 11 11 C 1.39956 * 119.99662 * 184.72672 * 10 8 7 12 12 C 1.39289 * 119.94957 * 213.56926 * 11 10 8 13 13 C 1.38485 * 120.43364 * 180.02562 * 12 11 10 14 14 C 1.37690 * 120.31584 * 359.67724 * 13 12 11 15 15 C 1.40738 * 119.88419 * 0.62390 * 14 13 12 16 16 C 1.41412 * 120.20714 * 179.67230 * 15 14 13 17 17 H 1.08000 * 119.99646 * 153.26749 * 16 15 14 18 18 C 1.39932 * 120.00262 * 333.27343 * 16 15 14 19 19 N 1.30822 * 119.99776 * 330.27756 * 18 16 15 20 20 Si 1.86798 * 119.99735 * 150.27643 * 18 16 15 21 21 H 1.48507 * 109.46989 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47364 * 60.00366 * 20 18 16 23 23 H 1.48507 * 109.47327 * 299.99574 * 20 18 16 24 24 C 1.38234 * 119.94771 * 33.59889 * 11 10 8 25 25 C 1.54478 * 104.06474 * 359.97438 * 5 4 2 26 26 O 1.44427 * 110.37129 * 122.25241 * 2 1 3 27 27 H 1.08992 * 109.47058 * 299.20382 * 1 2 3 28 28 H 1.09005 * 109.46881 * 59.20771 * 1 2 3 29 29 H 1.09000 * 109.46886 * 179.20207 * 1 2 3 30 30 H 1.09004 * 110.51001 * 98.55044 * 4 2 1 31 31 H 1.08999 * 110.51555 * 335.83468 * 4 2 1 32 32 H 0.96996 * 120.00672 * 21.09536 * 7 5 4 33 33 H 0.96995 * 120.00509 * 4.72232 * 10 8 7 34 34 H 1.07999 * 119.77963 * 0.02562 * 12 11 10 35 35 H 1.07997 * 119.84242 * 179.97438 * 13 12 11 36 36 H 1.08005 * 120.05455 * 180.32582 * 14 13 12 37 37 H 0.97000 * 120.00299 * 353.46120 * 19 18 16 38 38 H 1.07999 * 120.16255 * 0.02562 * 24 11 10 39 39 H 1.09005 * 110.37117 * 142.80521 * 25 5 4 40 40 H 1.08999 * 110.37675 * 265.04032 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7754 -1.2231 5 6 3.3178 -1.5065 -0.6842 6 1 3.1979 -2.5865 -0.7704 7 7 4.5182 -1.0658 -1.3991 8 6 5.6207 -1.8411 -1.4067 9 8 5.6188 -2.9064 -0.8207 10 7 6.7248 -1.4360 -2.0648 11 6 7.8351 -2.2831 -2.1565 12 6 9.1204 -1.7464 -2.1652 13 6 10.2261 -2.5753 -2.2561 14 6 10.0666 -3.9408 -2.3324 15 6 8.7738 -4.4970 -2.3312 16 6 8.6020 -5.8981 -2.4162 17 1 7.7195 -6.3601 -1.9989 18 6 9.5753 -6.6858 -3.0409 19 7 10.2986 -6.1858 -4.0096 20 14 9.8418 -8.4512 -2.4916 21 1 10.9221 -9.0650 -3.3050 22 1 8.5855 -9.2215 -2.6743 23 1 10.2304 -8.4704 -1.0584 24 6 7.6544 -3.6511 -2.2391 25 6 3.3878 -1.0859 0.8005 26 8 2.0328 -0.7225 1.1450 27 1 -0.3633 0.5014 0.8970 28 1 -0.3633 0.5261 -0.8828 29 1 -0.3633 -1.0276 -0.0143 30 1 2.3430 -0.0861 -2.0214 31 1 1.3276 -1.4937 -1.5756 32 1 4.5196 -0.2162 -1.8670 33 1 6.7500 -0.5573 -2.4749 34 1 9.2556 -0.6769 -2.1005 35 1 11.2183 -2.1490 -2.2624 36 1 10.9321 -4.5837 -2.3979 37 1 10.0979 -5.3034 -4.3590 38 1 6.6582 -4.0682 -2.2333 39 1 3.7245 -1.9202 1.4159 40 1 4.0546 -0.2322 0.9221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335455700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = -83.826072 kcal Electronic energy + Delta-G solvation = -22480.438053 eV Core-core repulsion = 19065.532688 eV Total energy + Delta-G solvation = -3414.905364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74108 -40.48348 -39.21012 -36.49716 -35.78548 -34.88544 -33.09118 -31.64180 -31.27054 -29.36462 -27.05439 -26.96279 -24.12492 -23.02012 -22.62488 -21.93151 -21.77874 -20.07953 -19.49307 -18.07080 -17.26727 -16.98088 -16.66151 -16.56693 -16.22602 -15.87458 -15.80186 -15.57834 -15.20058 -14.62630 -14.33800 -14.06830 -13.80561 -13.61865 -13.36140 -13.17510 -12.98552 -12.79169 -12.62310 -12.34604 -12.27669 -12.07946 -11.94806 -11.80796 -11.56473 -11.28408 -10.92958 -10.89113 -10.83333 -10.22109 -9.60671 -9.23528 -8.80881 -6.46642 0.79258 0.93696 1.48491 1.51907 1.61447 1.79506 2.07126 2.31852 2.65433 2.85862 3.23342 3.43733 3.54932 3.67091 3.87820 4.09066 4.15760 4.34636 4.41942 4.56186 4.57366 4.67413 4.73241 4.79223 4.81871 4.93314 4.98877 5.05513 5.07226 5.09402 5.27970 5.32480 5.54023 5.60556 5.78100 5.83324 5.83893 5.90232 6.08341 6.28057 6.39778 6.82437 6.91213 7.01797 7.50465 8.00962 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.003270 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.441809 B = 8559.678889 C = 9311.355450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 H 0.087 0.913 4 C -0.145 4.145 5 C 0.130 3.870 6 H 0.074 0.926 7 N -0.714 5.714 8 C 0.694 3.306 9 O -0.616 6.616 10 N -0.668 5.668 11 C 0.189 3.811 12 C -0.259 4.259 13 C -0.069 4.069 14 C -0.249 4.249 15 C 0.083 3.917 16 C -0.569 4.569 17 H 0.056 0.944 18 C 0.012 3.988 19 N -0.806 5.806 20 Si 1.113 2.887 21 H -0.263 1.263 22 H -0.262 1.262 23 H -0.266 1.266 24 C -0.242 4.242 25 C 0.038 3.962 26 O -0.390 6.390 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.417 0.583 33 H 0.420 0.580 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.283 0.717 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 15.254 2.287 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.105 0.895 4 C -0.183 4.183 5 C 0.024 3.976 6 H 0.092 0.908 7 N -0.372 5.372 8 C 0.395 3.605 9 O -0.495 6.495 10 N -0.316 5.316 11 C 0.095 3.905 12 C -0.281 4.281 13 C -0.088 4.088 14 C -0.269 4.269 15 C 0.079 3.921 16 C -0.597 4.597 17 H 0.075 0.925 18 C -0.205 4.205 19 N -0.428 5.428 20 Si 0.929 3.071 21 H -0.187 1.187 22 H -0.186 1.186 23 H -0.191 1.191 24 C -0.264 4.264 25 C -0.040 4.040 26 O -0.309 6.309 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.255 0.745 33 H 0.258 0.742 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.490 12.997 2.708 18.927 hybrid contribution -0.738 1.828 -0.229 1.984 sum -14.228 14.825 2.479 20.697 Atomic orbital electron populations 1.21846 0.91769 1.03048 1.03630 1.23265 0.96552 0.95824 0.83793 0.89536 1.23280 0.95259 1.00525 0.99244 1.22148 0.84068 1.00060 0.91312 0.90761 1.44909 1.10730 1.23934 1.57657 1.16224 0.81096 0.83726 0.79462 1.90977 1.83484 1.25001 1.50010 1.42325 1.12483 1.19805 1.57030 1.17321 0.86200 0.88958 0.98022 1.20429 0.89738 0.99570 1.18330 1.20783 0.98353 0.92589 0.97049 1.21085 0.95706 0.95388 1.14748 1.17829 0.91780 0.93539 0.88903 1.20637 1.08444 0.93083 1.37528 0.92539 1.28339 0.90379 1.10278 0.91516 1.70561 1.35755 1.19252 1.17270 0.83083 0.78223 0.68495 0.77262 1.18741 1.18626 1.19135 1.20917 0.97126 0.92654 1.15692 1.23763 0.84670 1.00191 0.95377 1.89174 1.26870 1.75180 1.39681 0.91869 0.88682 0.92350 0.86930 0.88664 0.74504 0.74157 0.84526 0.85355 0.89445 0.90589 0.89893 0.90490 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.52 71.98 0.69 -0.95 16 2 C 0.06 0.91 3.92 31.10 0.12 1.03 16 3 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.15 -1.99 6.39 31.61 0.20 -1.79 16 5 C 0.13 2.93 3.42 46.01 0.16 3.09 16 6 H 0.07 2.16 7.67 -2.39 -0.02 2.14 16 7 N -0.71 -16.04 5.12 -452.95 -2.32 -18.36 16 8 C 0.69 24.23 8.30 179.05 1.49 25.72 16 9 O -0.62 -28.99 13.72 -3.97 -0.05 -29.04 16 10 N -0.67 -22.14 5.35 -317.32 -1.70 -23.84 16 11 C 0.19 8.39 6.27 38.10 0.24 8.62 16 12 C -0.26 -10.54 9.97 22.58 0.23 -10.31 16 13 C -0.07 -3.07 10.02 22.20 0.22 -2.85 16 14 C -0.25 -13.28 8.15 22.75 0.19 -13.10 16 15 C 0.08 4.78 5.23 -21.31 -0.11 4.67 16 16 C -0.57 -33.68 8.93 23.46 0.21 -33.47 16 17 H 0.06 3.42 8.00 -2.91 -0.02 3.40 16 18 C 0.01 0.65 4.80 85.25 0.41 1.06 16 19 N -0.81 -44.95 12.41 21.82 0.27 -44.68 16 20 Si 1.11 46.07 30.02 68.60 2.06 48.13 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 24 C -0.24 -13.17 8.39 22.85 0.19 -12.98 16 25 C 0.04 0.91 7.35 72.48 0.53 1.45 16 26 O -0.39 -8.91 11.35 -148.98 -1.69 -10.60 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.11 0.93 7.65 -2.39 -0.02 0.91 16 31 H 0.09 1.25 7.86 -2.39 -0.02 1.23 16 32 H 0.42 5.63 8.33 -92.71 -0.77 4.86 16 33 H 0.42 9.50 8.83 -92.71 -0.82 8.69 16 34 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 35 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.09 4.83 6.77 -2.91 -0.02 4.81 16 37 H 0.28 16.30 7.16 -92.71 -0.66 15.63 16 38 H 0.08 4.86 6.40 -2.91 -0.02 4.84 16 39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 Total: -1.00 -75.85 333.49 0.91 -74.93 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.41 Total: 33.26 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.76 Total: -29.81 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -3.74 Total: -86.87 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.74 Total: -39.65 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.06 Total: 48.13 kcal Total: -75.85 0.91 -74.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335455700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.894 kcal (2) G-P(sol) polarization free energy of solvation -75.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds