Wall clock time and date at job start Tue Mar 31 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.12071 * 2 1 4 4 C 1.52171 * 109.13079 * 240.82943 * 2 1 3 5 5 O 1.43211 * 110.18465 * 178.24191 * 4 2 1 6 6 C 1.35635 * 115.83002 * 89.31768 * 5 4 2 7 7 C 1.38832 * 120.21091 * 106.87653 * 6 5 4 8 8 C 1.38134 * 119.83850 * 184.87584 * 7 6 5 9 9 C 1.38294 * 120.32503 * 359.94199 * 8 7 6 10 10 C 1.38437 * 119.98895 * 359.11492 * 9 8 7 11 11 C 1.37705 * 119.69137 * 0.21521 * 10 9 8 12 12 C 1.51563 * 120.76492 * 181.69782 * 11 10 9 13 13 N 1.46381 * 109.12675 * 119.10091 * 2 1 3 14 14 C 1.34783 * 119.79780 * 4.06089 * 13 2 1 15 15 O 1.21583 * 119.99820 * 5.80403 * 14 13 2 16 16 N 1.34776 * 119.99704 * 185.81554 * 14 13 2 17 17 C 1.46502 * 119.99723 * 185.02306 * 16 14 13 18 18 C 1.50703 * 109.47067 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00188 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99585 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00433 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47024 * 89.99638 * 22 20 18 24 24 H 1.48495 * 109.47582 * 209.99934 * 22 20 18 25 25 H 1.48498 * 109.46952 * 330.00032 * 22 20 18 26 26 H 1.09002 * 109.47137 * 174.23027 * 1 2 3 27 27 H 1.08998 * 109.47247 * 294.23644 * 1 2 3 28 28 H 1.09004 * 109.47194 * 54.23259 * 1 2 3 29 29 H 1.09000 * 109.34931 * 58.02311 * 4 2 1 30 30 H 1.09000 * 109.23472 * 298.38740 * 4 2 1 31 31 H 1.07996 * 120.08170 * 4.91981 * 7 6 5 32 32 H 1.08000 * 119.83662 * 179.97438 * 8 7 6 33 33 H 1.07999 * 120.00266 * 179.13553 * 9 8 7 34 34 H 1.07996 * 120.14795 * 180.18905 * 10 9 8 35 35 H 1.09005 * 109.59404 * 5.22627 * 12 11 10 36 36 H 1.08996 * 109.59339 * 125.66405 * 12 11 10 37 37 H 0.96997 * 120.00253 * 5.02950 * 16 14 13 38 38 H 1.09002 * 109.47286 * 300.00409 * 17 16 14 39 39 H 1.09005 * 109.46702 * 60.00262 * 17 16 14 40 40 H 0.97001 * 119.99760 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0287 -0.7007 -1.2553 5 8 3.4600 -0.6777 -1.2986 6 6 4.0862 -1.7204 -0.6984 7 6 4.6971 -2.7035 -1.4651 8 6 5.2446 -3.8129 -0.8507 9 6 5.1882 -3.9487 0.5244 10 6 4.5972 -2.9610 1.2935 11 6 4.0635 -1.8484 0.6824 12 6 3.4449 -0.7346 1.5033 13 7 2.0096 -0.6726 1.2084 14 6 1.1268 -1.2387 2.0551 15 8 -0.0527 -1.2828 1.7634 16 7 1.5516 -1.7555 3.2251 17 6 0.6124 -2.4679 4.0951 18 6 1.3331 -2.9419 5.3308 19 1 2.3854 -2.7330 5.4558 20 6 0.6492 -3.6422 6.3018 21 7 -0.6323 -3.8961 6.1498 22 14 1.5426 -4.2304 7.8332 23 1 1.4647 -3.1842 8.8843 24 1 0.9074 -5.4779 8.3285 25 1 2.9660 -4.4966 7.5043 26 1 -0.3633 -1.0225 -0.1033 27 1 -0.3634 0.4218 0.9371 28 1 -0.3634 0.6007 -0.8339 29 1 1.6325 -0.1923 -2.1343 30 1 1.6841 -1.7348 -1.2503 31 1 4.7449 -2.6007 -2.5391 32 1 5.7195 -4.5779 -1.4472 33 1 5.6056 -4.8249 0.9981 34 1 4.5544 -3.0629 2.3678 35 1 3.5916 -0.9376 2.5642 36 1 3.9128 0.2147 1.2427 37 1 2.4790 -1.6558 3.4912 38 1 -0.1974 -1.7971 4.3820 39 1 0.2022 -3.3255 3.5618 40 1 -1.1135 -4.3884 6.8330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335812325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:00 Heat of formation + Delta-G solvation = -11.447593 kcal Electronic energy + Delta-G solvation = -23771.977644 eV Core-core repulsion = 20360.210846 eV Total energy + Delta-G solvation = -3411.766798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89589 -39.25148 -37.51840 -35.38912 -34.62759 -33.00041 -31.97261 -30.82148 -29.58245 -27.07339 -26.64605 -25.45570 -23.35201 -22.44021 -21.62372 -21.19326 -19.40880 -18.18350 -17.48354 -16.38918 -16.19452 -15.82130 -15.59447 -15.49229 -15.04898 -14.66072 -14.20337 -14.01860 -13.61363 -13.36646 -13.04739 -12.85648 -12.41268 -12.24387 -12.02729 -12.00364 -11.67575 -11.63709 -11.49931 -11.44213 -10.98432 -10.91308 -10.87873 -10.26596 -10.07277 -9.37774 -8.97333 -8.72821 -8.64906 -8.54406 -8.37015 -7.75468 -6.16465 -4.23038 1.10425 1.27997 3.06307 3.23647 3.29964 3.31894 3.39112 3.82975 4.00801 4.30389 4.59381 4.65459 4.82299 4.95046 4.98936 5.08267 5.15753 5.19855 5.21542 5.33270 5.41265 5.53379 5.59345 5.67855 5.73807 5.92053 5.96079 6.27781 6.37815 6.42162 6.47285 6.58819 6.67794 6.94837 7.10403 7.44066 7.49990 7.54143 7.56314 7.82681 8.00791 8.73852 8.87563 9.30288 9.46317 10.93750 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.005100 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.177269 B = 5488.486456 C = 6759.831579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.135 3.865 3 H 0.074 0.926 4 C 0.054 3.946 5 O -0.330 6.330 6 C 0.108 3.892 7 C -0.139 4.139 8 C -0.106 4.106 9 C -0.127 4.127 10 C -0.085 4.085 11 C -0.134 4.134 12 C 0.157 3.843 13 N -0.632 5.632 14 C 0.695 3.305 15 O -0.587 6.587 16 N -0.728 5.728 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.061 0.939 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.383 0.617 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 4.573 -14.165 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.022 4.022 5 O -0.247 6.247 6 C 0.064 3.936 7 C -0.157 4.157 8 C -0.124 4.124 9 C -0.145 4.145 10 C -0.103 4.103 11 C -0.136 4.136 12 C 0.033 3.967 13 N -0.370 5.370 14 C 0.397 3.603 15 O -0.466 6.466 16 N -0.382 5.382 17 C 0.146 3.854 18 C -0.580 4.580 19 H 0.079 0.921 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.053 0.947 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.218 0.782 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.400 4.581 -14.333 18.291 hybrid contribution 0.880 -0.537 1.089 1.499 sum 11.279 4.044 -13.244 17.860 Atomic orbital electron populations 1.22203 0.91363 1.03815 1.01456 1.21292 0.96832 0.95373 0.83513 0.90814 1.23342 0.78243 1.01922 0.98701 1.86062 1.19659 1.43010 1.75967 1.18550 0.96809 0.88247 0.90022 1.21234 1.01738 0.92694 1.00065 1.21019 0.99303 0.97240 0.94866 1.21232 1.00137 0.99250 0.93882 1.20984 0.96379 0.92422 1.00559 1.20858 1.01137 0.97585 0.94021 1.20512 0.80861 0.96687 0.98637 1.47167 1.05003 1.60907 1.23947 1.16163 0.84743 0.78531 0.80828 1.90926 1.15639 1.63770 1.76293 1.45999 1.14244 1.58750 1.19224 1.18972 0.88097 0.91117 0.87197 1.21198 0.96224 1.36846 1.03685 0.92091 1.24930 0.94873 0.95626 0.98490 1.69980 1.07935 1.39560 1.34765 0.86432 0.79617 0.78294 0.82658 1.20469 1.21020 1.19781 0.90181 0.90248 0.94732 0.87631 0.91867 0.85553 0.85747 0.85586 0.85010 0.89228 0.89468 0.78218 0.95675 0.95892 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.52 37.16 0.28 -1.71 16 2 C 0.13 1.89 3.38 -68.42 -0.23 1.65 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.05 0.67 5.92 36.73 0.22 0.89 16 5 O -0.33 -4.41 9.90 -18.60 -0.18 -4.60 16 6 C 0.11 1.46 5.61 -39.20 -0.22 1.24 16 7 C -0.14 -1.65 10.00 -39.40 -0.39 -2.04 16 8 C -0.11 -1.15 10.03 -39.60 -0.40 -1.55 16 9 C -0.13 -1.47 10.06 -39.49 -0.40 -1.87 16 10 C -0.08 -1.11 9.71 -39.70 -0.39 -1.49 16 11 C -0.13 -1.84 5.48 -104.23 -0.57 -2.41 16 12 C 0.16 2.14 5.67 -4.68 -0.03 2.11 16 13 N -0.63 -10.22 2.69 -173.11 -0.47 -10.68 16 14 C 0.70 14.33 8.08 -86.91 -0.70 13.63 16 15 O -0.59 -13.82 11.59 5.29 0.06 -13.75 16 16 N -0.73 -15.60 5.43 -66.41 -0.36 -15.96 16 17 C 0.27 7.08 5.43 -5.19 -0.03 7.05 16 18 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 19 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.88 -25.95 13.29 55.43 0.74 -25.22 16 22 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H 0.08 1.41 6.67 -51.93 -0.35 1.07 16 27 H 0.08 1.42 6.62 -51.93 -0.34 1.07 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.88 7.87 -51.93 -0.41 0.47 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.13 1.64 8.01 -52.49 -0.42 1.22 16 35 H 0.09 1.17 5.52 -51.93 -0.29 0.88 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.38 7.17 5.81 -40.82 -0.24 6.94 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -31.76 324.83 -8.99 -40.76 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.38 Total: 6.59 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -3.27 Total: 2.31 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.09 Total: -51.86 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.12 Total: -18.35 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.76 -8.99 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335812325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.309 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds