Wall clock time and date at job start Tue Mar 31 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.12071 * 2 1 4 4 C 1.52171 * 109.13079 * 240.82943 * 2 1 3 5 5 O 1.43211 * 110.18465 * 178.24191 * 4 2 1 6 6 C 1.35635 * 115.83002 * 89.31768 * 5 4 2 7 7 C 1.38832 * 120.21091 * 106.87653 * 6 5 4 8 8 C 1.38134 * 119.83850 * 184.87584 * 7 6 5 9 9 C 1.38294 * 120.32503 * 359.94199 * 8 7 6 10 10 C 1.38437 * 119.98895 * 359.11492 * 9 8 7 11 11 C 1.37705 * 119.69137 * 0.21521 * 10 9 8 12 12 C 1.51563 * 120.76492 * 181.69782 * 11 10 9 13 13 N 1.46381 * 109.12675 * 119.10091 * 2 1 3 14 14 C 1.34783 * 119.79780 * 4.06089 * 13 2 1 15 15 O 1.21583 * 119.99820 * 5.80403 * 14 13 2 16 16 N 1.34776 * 119.99704 * 185.81554 * 14 13 2 17 17 C 1.46502 * 119.99723 * 185.02306 * 16 14 13 18 18 C 1.50703 * 109.47067 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00188 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99585 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00433 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47024 * 89.99638 * 22 20 18 24 24 H 1.48495 * 109.47582 * 209.99934 * 22 20 18 25 25 H 1.48498 * 109.46952 * 330.00032 * 22 20 18 26 26 H 1.09002 * 109.47137 * 174.23027 * 1 2 3 27 27 H 1.08998 * 109.47247 * 294.23644 * 1 2 3 28 28 H 1.09004 * 109.47194 * 54.23259 * 1 2 3 29 29 H 1.09000 * 109.34931 * 58.02311 * 4 2 1 30 30 H 1.09000 * 109.23472 * 298.38740 * 4 2 1 31 31 H 1.07996 * 120.08170 * 4.91981 * 7 6 5 32 32 H 1.08000 * 119.83662 * 179.97438 * 8 7 6 33 33 H 1.07999 * 120.00266 * 179.13553 * 9 8 7 34 34 H 1.07996 * 120.14795 * 180.18905 * 10 9 8 35 35 H 1.09005 * 109.59404 * 5.22627 * 12 11 10 36 36 H 1.08996 * 109.59339 * 125.66405 * 12 11 10 37 37 H 0.96997 * 120.00253 * 5.02950 * 16 14 13 38 38 H 1.09002 * 109.47286 * 300.00409 * 17 16 14 39 39 H 1.09005 * 109.46702 * 60.00262 * 17 16 14 40 40 H 0.97001 * 119.99760 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0287 -0.7007 -1.2553 5 8 3.4600 -0.6777 -1.2986 6 6 4.0862 -1.7204 -0.6984 7 6 4.6971 -2.7035 -1.4651 8 6 5.2446 -3.8129 -0.8507 9 6 5.1882 -3.9487 0.5244 10 6 4.5972 -2.9610 1.2935 11 6 4.0635 -1.8484 0.6824 12 6 3.4449 -0.7346 1.5033 13 7 2.0096 -0.6726 1.2084 14 6 1.1268 -1.2387 2.0551 15 8 -0.0527 -1.2828 1.7634 16 7 1.5516 -1.7555 3.2251 17 6 0.6124 -2.4679 4.0951 18 6 1.3331 -2.9419 5.3308 19 1 2.3854 -2.7330 5.4558 20 6 0.6492 -3.6422 6.3018 21 7 -0.6323 -3.8961 6.1498 22 14 1.5426 -4.2304 7.8332 23 1 1.4647 -3.1842 8.8843 24 1 0.9074 -5.4779 8.3285 25 1 2.9660 -4.4966 7.5043 26 1 -0.3633 -1.0225 -0.1033 27 1 -0.3634 0.4218 0.9371 28 1 -0.3634 0.6007 -0.8339 29 1 1.6325 -0.1923 -2.1343 30 1 1.6841 -1.7348 -1.2503 31 1 4.7449 -2.6007 -2.5391 32 1 5.7195 -4.5779 -1.4472 33 1 5.6056 -4.8249 0.9981 34 1 4.5544 -3.0629 2.3678 35 1 3.5916 -0.9376 2.5642 36 1 3.9128 0.2147 1.2427 37 1 2.4790 -1.6558 3.4912 38 1 -0.1974 -1.7971 4.3820 39 1 0.2022 -3.3255 3.5618 40 1 -1.1135 -4.3884 6.8330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335812325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:59 Heat of formation + Delta-G solvation = -31.735447 kcal Electronic energy + Delta-G solvation = -23772.857391 eV Core-core repulsion = 20360.210846 eV Total energy + Delta-G solvation = -3412.646545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.10527 -40.58767 -38.52903 -36.81576 -36.34139 -34.73060 -33.47119 -31.91125 -30.71212 -28.97972 -27.80412 -26.59123 -25.06249 -23.65575 -22.93293 -22.27973 -21.05051 -19.39911 -18.86175 -17.94544 -17.63755 -17.07524 -16.90475 -16.59627 -16.47881 -16.05712 -15.72905 -15.24912 -14.90955 -14.77197 -14.38124 -14.09719 -14.02235 -13.78477 -13.58608 -13.17591 -12.93446 -12.84476 -12.80053 -12.73114 -12.62292 -12.50557 -12.19139 -11.98387 -11.45987 -11.09857 -10.78565 -10.25984 -9.97327 -9.84900 -9.54147 -9.44621 -8.27966 -6.44231 0.14735 0.34055 1.43290 1.45877 1.56564 1.73293 2.19467 2.36657 2.41201 2.96264 3.07226 3.20329 3.62976 3.77502 3.87592 4.00634 4.01550 4.13435 4.24146 4.45007 4.46455 4.53572 4.55461 4.63292 4.71629 4.83018 4.99446 5.05698 5.09516 5.28274 5.33666 5.37852 5.45797 5.48723 5.53732 5.70446 5.74021 5.78094 5.85852 6.05318 6.46398 6.66976 7.14972 7.25971 7.70234 8.84313 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.005100 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.177269 B = 5488.486456 C = 6759.831579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.128 3.872 3 H 0.099 0.901 4 C 0.061 3.939 5 O -0.330 6.330 6 C 0.088 3.912 7 C -0.142 4.142 8 C -0.102 4.102 9 C -0.132 4.132 10 C -0.102 4.102 11 C -0.151 4.151 12 C 0.154 3.846 13 N -0.623 5.623 14 C 0.691 3.309 15 O -0.623 6.623 16 N -0.724 5.724 17 C 0.289 3.711 18 C -0.553 4.553 19 H 0.081 0.919 20 C 0.006 3.994 21 N -0.930 5.930 22 Si 0.983 3.017 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.255 1.255 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.044 0.956 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.398 0.602 38 H -0.015 1.015 39 H -0.017 1.017 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.148 4.622 -14.931 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.025 3.975 3 H 0.117 0.883 4 C -0.014 4.014 5 O -0.247 6.247 6 C 0.044 3.956 7 C -0.161 4.161 8 C -0.120 4.120 9 C -0.150 4.150 10 C -0.121 4.121 11 C -0.153 4.153 12 C 0.032 3.968 13 N -0.360 5.360 14 C 0.393 3.607 15 O -0.505 6.505 16 N -0.380 5.380 17 C 0.166 3.834 18 C -0.591 4.591 19 H 0.099 0.901 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.806 3.194 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.178 1.178 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.062 0.938 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.235 0.765 38 H 0.003 0.997 39 H 0.001 0.999 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.202 4.667 -15.145 20.626 hybrid contribution 0.026 -0.535 1.213 1.326 sum 13.228 4.133 -13.931 19.650 Atomic orbital electron populations 1.21960 0.92419 1.02231 1.01219 1.21578 0.96018 0.96659 0.83280 0.88328 1.23337 0.78157 1.01000 0.98946 1.86066 1.19683 1.43180 1.75770 1.18795 0.97604 0.89025 0.90161 1.21529 1.01057 0.92398 1.01069 1.21400 0.98297 0.97459 0.94827 1.21548 0.99550 0.99418 0.94440 1.21150 0.97153 0.92873 1.00900 1.20874 1.02121 0.97896 0.94389 1.20707 0.79088 0.98063 0.98985 1.47192 1.05599 1.59604 1.23628 1.16357 0.84856 0.78491 0.80970 1.90927 1.17569 1.65023 1.76998 1.45623 1.14166 1.58881 1.19347 1.18366 0.88125 0.89122 0.87789 1.21557 0.97159 1.36751 1.03591 0.90076 1.26021 0.95569 0.95487 1.02249 1.70145 1.10019 1.40480 1.36237 0.85181 0.78895 0.77555 0.77738 1.19689 1.20969 1.17831 0.93304 0.93510 0.90899 0.84101 0.93787 0.83691 0.82681 0.83633 0.85097 0.89085 0.87414 0.76511 0.99697 0.99869 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 7.52 71.98 0.54 -3.15 16 2 C 0.13 3.45 3.38 44.74 0.15 3.60 16 3 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.06 1.41 5.92 71.71 0.42 1.83 16 5 O -0.33 -8.08 9.90 -89.48 -0.89 -8.96 16 6 C 0.09 2.24 5.61 22.52 0.13 2.36 16 7 C -0.14 -3.03 10.00 22.39 0.22 -2.80 16 8 C -0.10 -1.93 10.03 22.26 0.22 -1.70 16 9 C -0.13 -2.78 10.06 22.33 0.22 -2.56 16 10 C -0.10 -2.56 9.71 22.19 0.22 -2.35 16 11 C -0.15 -3.99 5.48 -19.61 -0.11 -4.10 16 12 C 0.15 4.06 5.67 85.88 0.49 4.55 16 13 N -0.62 -20.10 2.69 -819.85 -2.21 -22.31 16 14 C 0.69 29.58 8.08 179.05 1.45 31.03 16 15 O -0.62 -31.13 11.59 -3.98 -0.05 -31.17 16 16 N -0.72 -32.16 5.43 -482.28 -2.62 -34.78 16 17 C 0.29 16.14 5.43 85.63 0.47 16.60 16 18 C -0.55 -30.14 9.28 25.60 0.24 -29.91 16 19 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 20 C 0.01 0.35 5.46 84.65 0.46 0.82 16 21 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 22 Si 0.98 42.16 29.54 68.60 2.03 44.19 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 26 H 0.05 1.79 6.67 -2.39 -0.02 1.77 16 27 H 0.05 1.73 6.62 -2.39 -0.02 1.71 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.19 7.87 -2.39 -0.02 1.17 16 31 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.13 3.19 8.01 -2.91 -0.02 3.16 16 35 H 0.09 2.32 5.52 -2.38 -0.01 2.31 16 36 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.40 15.05 5.81 -92.71 -0.54 14.52 16 38 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 40 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -72.12 324.83 2.19 -69.93 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.52 Total: 24.79 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 5.12 Total: 14.22 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.54 Total: -113.00 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.93 Total: -40.13 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -72.12 2.19 -69.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335812325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.196 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds