Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.12273 * 2 1 4 4 C 1.52172 * 109.13149 * 119.16232 * 2 1 3 5 5 O 1.43219 * 110.06621 * 181.74877 * 4 2 1 6 6 C 1.35729 * 115.72441 * 270.46336 * 5 4 2 7 7 C 1.38838 * 120.31990 * 253.26634 * 6 5 4 8 8 C 1.38127 * 119.84721 * 175.27183 * 7 6 5 9 9 C 1.38296 * 120.32805 * 0.10315 * 8 7 6 10 10 C 1.38434 * 119.98526 * 0.83227 * 9 8 7 11 11 C 1.37704 * 119.68779 * 359.80092 * 10 9 8 12 12 C 1.51577 * 120.77230 * 178.29776 * 11 10 9 13 13 N 1.46386 * 109.08444 * 240.86150 * 2 1 3 14 14 C 1.34774 * 119.79184 * 355.95526 * 13 2 1 15 15 O 1.21590 * 120.00025 * 5.42029 * 14 13 2 16 16 N 1.34775 * 120.00115 * 185.41793 * 14 13 2 17 17 C 1.46500 * 120.00260 * 185.11059 * 16 14 13 18 18 C 1.50702 * 109.47066 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99779 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99669 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99735 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00003 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46782 * 90.00033 * 22 20 18 24 24 H 1.48500 * 109.46849 * 209.99669 * 22 20 18 25 25 H 1.48496 * 109.47268 * 329.99607 * 22 20 18 26 26 H 1.09002 * 109.47271 * 300.42306 * 1 2 3 27 27 H 1.09005 * 109.47155 * 60.41765 * 1 2 3 28 28 H 1.08997 * 109.47378 * 180.41609 * 1 2 3 29 29 H 1.08999 * 109.35553 * 301.90079 * 4 2 1 30 30 H 1.09001 * 109.34830 * 61.60534 * 4 2 1 31 31 H 1.08001 * 120.07469 * 355.25211 * 7 6 5 32 32 H 1.07997 * 119.83787 * 180.11960 * 8 7 6 33 33 H 1.07995 * 120.00765 * 180.86327 * 9 8 7 34 34 H 1.07998 * 120.15732 * 179.79339 * 10 9 8 35 35 H 1.08997 * 109.58768 * 354.84682 * 12 11 10 36 36 H 1.09000 * 109.70426 * 234.48920 * 12 11 10 37 37 H 0.97003 * 120.00045 * 5.10173 * 16 14 13 38 38 H 1.08998 * 109.46707 * 299.99759 * 17 16 14 39 39 H 1.08999 * 109.47200 * 59.99749 * 17 16 14 40 40 H 0.96994 * 120.00007 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0287 -0.7006 1.2554 5 8 3.4601 -0.6762 1.2960 6 6 4.0843 -1.7226 0.6979 7 6 4.6947 -2.7059 1.4647 8 6 5.2416 -3.8158 0.8508 9 6 5.1862 -3.9515 -0.5244 10 6 4.5955 -2.9638 -1.2938 11 6 4.0617 -1.8511 -0.6828 12 6 3.4436 -0.7370 -1.5039 13 7 2.0086 -0.6736 -1.2083 14 6 1.1249 -1.2395 -2.0541 15 8 -0.0688 -1.1055 -1.8655 16 7 1.5644 -1.9541 -3.1090 17 6 0.6092 -2.4747 -4.0902 18 6 1.3516 -3.2310 -5.1616 19 1 2.4272 -3.3157 -5.1159 20 6 0.6573 -3.8156 -6.1996 21 7 1.3052 -4.4760 -7.1344 22 14 -1.2033 -3.6696 -6.2780 23 1 -1.5724 -2.4528 -7.0453 24 1 -1.7659 -4.8682 -6.9503 25 1 -1.7507 -3.5716 -4.9011 26 1 -0.3634 0.5204 0.8862 27 1 -0.3634 0.5074 -0.8937 28 1 -0.3634 -1.0276 0.0075 29 1 1.6336 -0.1913 2.1344 30 1 1.6850 -1.7350 1.2525 31 1 4.7420 -2.6031 2.5388 32 1 5.7147 -4.5815 1.4476 33 1 5.6031 -4.8280 -0.9979 34 1 4.5536 -3.0653 -2.3682 35 1 3.5895 -0.9406 -2.5647 36 1 3.9121 0.2129 -1.2463 37 1 2.5132 -2.1235 -3.2186 38 1 -0.0936 -3.1436 -3.5935 39 1 0.0644 -1.6458 -4.5421 40 1 0.8169 -4.8869 -7.8647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335812326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -8.412428 kcal Electronic energy + Delta-G solvation = -23843.703060 eV Core-core repulsion = 20432.067876 eV Total energy + Delta-G solvation = -3411.635183 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97110 -39.34551 -37.57076 -35.49659 -34.75704 -32.99172 -32.05470 -30.89985 -29.68765 -27.62625 -26.73642 -25.51094 -23.25988 -22.35029 -21.53070 -21.15985 -19.61715 -18.24604 -17.54169 -16.46724 -16.40811 -15.96607 -15.67653 -15.59485 -15.15439 -14.35066 -14.30442 -14.14320 -13.75334 -13.41651 -13.13503 -12.93529 -12.55649 -12.38001 -12.27923 -12.08632 -11.88913 -11.75018 -11.57206 -11.53553 -11.02702 -10.92175 -10.75055 -10.12546 -9.95780 -9.48987 -9.00817 -8.77559 -8.73641 -8.58030 -8.47646 -8.01520 -6.21998 -4.23851 1.07730 1.25288 2.98102 3.26578 3.32701 3.35113 3.42295 3.68045 3.95425 4.33090 4.52282 4.60346 4.76567 4.89696 4.94445 5.03085 5.11581 5.13779 5.15317 5.30245 5.37625 5.50111 5.55634 5.62167 5.68945 5.87570 5.90570 6.25913 6.31189 6.39954 6.44028 6.48199 6.64344 6.73180 6.90693 7.10531 7.24232 7.35374 7.40334 7.49103 8.23615 8.63108 8.77404 9.16325 9.39459 10.89944 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.005309 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.195615 B = 5272.950170 C = 6508.777336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.134 3.866 3 H 0.076 0.924 4 C 0.053 3.947 5 O -0.330 6.330 6 C 0.107 3.893 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.124 4.124 10 C -0.086 4.086 11 C -0.137 4.137 12 C 0.154 3.846 13 N -0.629 5.629 14 C 0.697 3.303 15 O -0.590 6.590 16 N -0.721 5.721 17 C 0.237 3.763 18 C -0.542 4.542 19 H 0.078 0.922 20 C 0.079 3.921 21 N -0.893 5.893 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.260 1.260 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.389 0.611 38 H 0.024 0.976 39 H 0.018 0.982 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.090 5.760 16.866 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.029 3.971 3 H 0.094 0.906 4 C -0.023 4.023 5 O -0.246 6.246 6 C 0.063 3.937 7 C -0.157 4.157 8 C -0.124 4.124 9 C -0.143 4.143 10 C -0.105 4.105 11 C -0.139 4.139 12 C 0.031 3.969 13 N -0.367 5.367 14 C 0.399 3.601 15 O -0.470 6.470 16 N -0.375 5.375 17 C 0.115 3.885 18 C -0.580 4.580 19 H 0.096 0.904 20 C -0.125 4.125 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.224 0.776 38 H 0.042 0.958 39 H 0.036 0.964 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.219 5.918 16.860 18.919 hybrid contribution -0.375 -0.318 -0.345 0.601 sum 5.844 5.600 16.515 18.391 Atomic orbital electron populations 1.22222 0.91353 1.04281 1.00936 1.21321 0.96848 0.95583 0.83332 0.90619 1.23346 0.78429 1.01829 0.98676 1.86107 1.19561 1.42710 1.76237 1.18560 0.96918 0.88233 0.90019 1.21231 1.01656 0.92695 1.00075 1.21031 0.99225 0.97224 0.94889 1.21253 0.99890 0.99265 0.93848 1.21006 0.96427 0.92420 1.00614 1.20869 1.01394 0.97552 0.94053 1.20560 0.80582 0.96905 0.98895 1.47122 1.05173 1.60156 1.24246 1.16157 0.84916 0.79009 0.80047 1.90929 1.14514 1.66558 1.74972 1.45691 1.11389 1.55125 1.25303 1.19365 0.88942 0.93745 0.86475 1.21066 0.95659 1.34294 1.06954 0.90419 1.24769 0.98730 0.94139 0.94878 1.69876 1.36219 1.34520 1.12388 0.86821 0.85533 0.78021 0.79346 1.19869 1.20949 1.18449 0.94746 0.89936 0.90492 0.87581 0.91937 0.85545 0.85688 0.85434 0.84910 0.88970 0.89228 0.77563 0.95842 0.96437 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.51 37.15 0.28 -1.61 16 2 C 0.13 1.79 3.38 -68.42 -0.23 1.56 16 3 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 4 C 0.05 0.63 5.93 36.74 0.22 0.85 16 5 O -0.33 -4.27 9.91 -18.89 -0.19 -4.45 16 6 C 0.11 1.41 5.61 -39.19 -0.22 1.19 16 7 C -0.14 -1.60 10.00 -39.40 -0.39 -1.99 16 8 C -0.11 -1.12 10.03 -39.60 -0.40 -1.52 16 9 C -0.12 -1.43 10.06 -39.49 -0.40 -1.82 16 10 C -0.09 -1.10 9.71 -39.70 -0.39 -1.49 16 11 C -0.14 -1.83 5.49 -104.22 -0.57 -2.40 16 12 C 0.15 2.07 5.40 -4.68 -0.03 2.04 16 13 N -0.63 -9.83 2.69 -173.11 -0.47 -10.30 16 14 C 0.70 13.75 8.16 -86.92 -0.71 13.04 16 15 O -0.59 -13.09 11.46 5.29 0.06 -13.03 16 16 N -0.72 -14.98 5.35 -66.42 -0.36 -15.33 16 17 C 0.24 5.85 4.50 -5.19 -0.02 5.83 16 18 C -0.54 -14.74 9.83 -34.44 -0.34 -15.08 16 19 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 22 Si 0.88 21.38 27.47 -169.99 -4.67 16.72 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 1.39 6.67 -51.93 -0.35 1.04 16 28 H 0.08 1.30 6.63 -51.93 -0.34 0.96 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.13 1.64 8.01 -52.49 -0.42 1.22 16 35 H 0.09 1.21 5.98 -51.93 -0.31 0.90 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.39 7.29 6.07 -40.82 -0.25 7.04 16 38 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 39 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -31.68 321.54 -8.67 -40.35 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.38 Total: 6.01 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -3.29 Total: 0.70 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.05 Total: -51.14 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.13 Total: -17.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.68 -8.67 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335812326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.938 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds