Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.12273 * 2 1 4 4 C 1.52172 * 109.13149 * 119.16232 * 2 1 3 5 5 O 1.43219 * 110.06621 * 181.74877 * 4 2 1 6 6 C 1.35729 * 115.72441 * 270.46336 * 5 4 2 7 7 C 1.38838 * 120.31990 * 253.26634 * 6 5 4 8 8 C 1.38127 * 119.84721 * 175.27183 * 7 6 5 9 9 C 1.38296 * 120.32805 * 0.10315 * 8 7 6 10 10 C 1.38434 * 119.98526 * 0.83227 * 9 8 7 11 11 C 1.37704 * 119.68779 * 359.80092 * 10 9 8 12 12 C 1.51577 * 120.77230 * 178.29776 * 11 10 9 13 13 N 1.46386 * 109.08444 * 240.86150 * 2 1 3 14 14 C 1.34774 * 119.79184 * 355.95526 * 13 2 1 15 15 O 1.21590 * 120.00025 * 5.42029 * 14 13 2 16 16 N 1.34775 * 120.00115 * 185.41793 * 14 13 2 17 17 C 1.46500 * 120.00260 * 185.11059 * 16 14 13 18 18 C 1.50702 * 109.47066 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99779 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99669 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99735 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00003 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46782 * 90.00033 * 22 20 18 24 24 H 1.48500 * 109.46849 * 209.99669 * 22 20 18 25 25 H 1.48496 * 109.47268 * 329.99607 * 22 20 18 26 26 H 1.09002 * 109.47271 * 300.42306 * 1 2 3 27 27 H 1.09005 * 109.47155 * 60.41765 * 1 2 3 28 28 H 1.08997 * 109.47378 * 180.41609 * 1 2 3 29 29 H 1.08999 * 109.35553 * 301.90079 * 4 2 1 30 30 H 1.09001 * 109.34830 * 61.60534 * 4 2 1 31 31 H 1.08001 * 120.07469 * 355.25211 * 7 6 5 32 32 H 1.07997 * 119.83787 * 180.11960 * 8 7 6 33 33 H 1.07995 * 120.00765 * 180.86327 * 9 8 7 34 34 H 1.07998 * 120.15732 * 179.79339 * 10 9 8 35 35 H 1.08997 * 109.58768 * 354.84682 * 12 11 10 36 36 H 1.09000 * 109.70426 * 234.48920 * 12 11 10 37 37 H 0.97003 * 120.00045 * 5.10173 * 16 14 13 38 38 H 1.08998 * 109.46707 * 299.99759 * 17 16 14 39 39 H 1.08999 * 109.47200 * 59.99749 * 17 16 14 40 40 H 0.96994 * 120.00007 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8870 1.0299 0.0000 4 6 2.0287 -0.7006 1.2554 5 8 3.4601 -0.6762 1.2960 6 6 4.0843 -1.7226 0.6979 7 6 4.6947 -2.7059 1.4647 8 6 5.2416 -3.8158 0.8508 9 6 5.1862 -3.9515 -0.5244 10 6 4.5955 -2.9638 -1.2938 11 6 4.0617 -1.8511 -0.6828 12 6 3.4436 -0.7370 -1.5039 13 7 2.0086 -0.6736 -1.2083 14 6 1.1249 -1.2395 -2.0541 15 8 -0.0688 -1.1055 -1.8655 16 7 1.5644 -1.9541 -3.1090 17 6 0.6092 -2.4747 -4.0902 18 6 1.3516 -3.2310 -5.1616 19 1 2.4272 -3.3157 -5.1159 20 6 0.6573 -3.8156 -6.1996 21 7 1.3052 -4.4760 -7.1344 22 14 -1.2033 -3.6696 -6.2780 23 1 -1.5724 -2.4528 -7.0453 24 1 -1.7659 -4.8682 -6.9503 25 1 -1.7507 -3.5716 -4.9011 26 1 -0.3634 0.5204 0.8862 27 1 -0.3634 0.5074 -0.8937 28 1 -0.3634 -1.0276 0.0075 29 1 1.6336 -0.1913 2.1344 30 1 1.6850 -1.7350 1.2525 31 1 4.7420 -2.6031 2.5388 32 1 5.7147 -4.5815 1.4476 33 1 5.6031 -4.8280 -0.9979 34 1 4.5536 -3.0653 -2.3682 35 1 3.5895 -0.9406 -2.5647 36 1 3.9121 0.2129 -1.2463 37 1 2.5132 -2.1235 -3.2186 38 1 -0.0936 -3.1436 -3.5935 39 1 0.0644 -1.6458 -4.5421 40 1 0.8169 -4.8869 -7.8647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335812326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -28.563354 kcal Electronic energy + Delta-G solvation = -23844.576869 eV Core-core repulsion = 20432.067876 eV Total energy + Delta-G solvation = -3412.508993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14017 -40.61198 -38.55300 -36.85611 -36.36963 -34.73196 -33.55116 -31.96778 -30.81235 -29.45118 -27.80689 -26.59481 -24.75669 -23.55851 -22.86674 -22.28267 -21.17132 -19.46163 -18.93777 -18.17052 -17.69140 -17.15325 -16.84687 -16.58572 -16.50661 -15.99881 -15.74620 -15.34481 -14.96753 -14.90509 -14.41287 -14.36247 -14.10702 -13.90197 -13.60270 -13.19901 -13.00589 -12.93672 -12.80579 -12.77612 -12.58753 -12.51926 -11.98476 -11.92443 -11.64274 -11.11307 -10.90979 -10.23887 -10.01328 -9.88700 -9.58763 -9.48534 -8.39601 -6.46216 0.13858 0.32603 1.32921 1.35004 1.48141 1.69872 2.13043 2.28590 2.38736 2.92234 2.96177 3.16796 3.60515 3.75113 3.86307 4.00660 4.01522 4.12269 4.22945 4.44417 4.46107 4.53445 4.54756 4.61998 4.70670 4.73448 4.84328 4.99903 5.04869 5.12394 5.20982 5.36267 5.37124 5.45454 5.53142 5.54834 5.71099 5.76925 5.88642 6.17336 6.45234 6.54542 7.04546 7.18890 7.62326 8.75056 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.005309 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.195615 B = 5272.950170 C = 6508.777336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.127 3.873 3 H 0.097 0.903 4 C 0.059 3.941 5 O -0.331 6.331 6 C 0.090 3.910 7 C -0.140 4.140 8 C -0.100 4.100 9 C -0.131 4.131 10 C -0.104 4.104 11 C -0.151 4.151 12 C 0.153 3.847 13 N -0.622 5.622 14 C 0.694 3.306 15 O -0.618 6.618 16 N -0.724 5.724 17 C 0.253 3.747 18 C -0.544 4.544 19 H 0.058 0.942 20 C 0.030 3.970 21 N -0.930 5.930 22 Si 0.936 3.064 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.262 1.262 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.142 0.858 30 H 0.047 0.953 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.398 0.602 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.319 6.266 18.926 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.024 3.976 3 H 0.115 0.885 4 C -0.016 4.016 5 O -0.247 6.247 6 C 0.046 3.954 7 C -0.158 4.158 8 C -0.118 4.118 9 C -0.149 4.149 10 C -0.122 4.122 11 C -0.153 4.153 12 C 0.030 3.970 13 N -0.358 5.358 14 C 0.396 3.604 15 O -0.500 6.500 16 N -0.379 5.379 17 C 0.128 3.872 18 C -0.582 4.582 19 H 0.076 0.924 20 C -0.171 4.171 21 N -0.569 5.569 22 Si 0.760 3.240 23 H -0.189 1.189 24 H -0.198 1.198 25 H -0.186 1.186 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.159 0.841 30 H 0.065 0.935 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.234 0.766 38 H 0.027 0.973 39 H 0.028 0.972 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.494 6.447 18.954 21.047 hybrid contribution -0.343 -0.473 -0.916 1.086 sum 6.151 5.975 18.038 19.973 Atomic orbital electron populations 1.21991 0.92059 1.02456 1.01286 1.21605 0.96298 0.96680 0.83026 0.88501 1.23373 0.78134 1.01153 0.98946 1.86109 1.19811 1.42815 1.76000 1.18780 0.97609 0.88954 0.90044 1.21526 1.00885 0.92318 1.01114 1.21395 0.98218 0.97522 0.94695 1.21536 0.99477 0.99371 0.94515 1.21118 0.97381 0.93047 1.00689 1.20854 1.02285 0.97700 0.94452 1.20697 0.79247 0.98148 0.98921 1.47177 1.05597 1.58977 1.24098 1.16296 0.85076 0.78911 0.80120 1.90933 1.15930 1.67439 1.75661 1.45468 1.11252 1.55794 1.25388 1.18939 0.88985 0.92850 0.86385 1.21237 0.95014 1.34313 1.07669 0.92434 1.25540 1.03131 0.93829 0.94569 1.69974 1.38080 1.35601 1.13205 0.85876 0.80235 0.78612 0.79278 1.18916 1.19837 1.18592 0.91059 0.92726 0.93410 0.84063 0.93476 0.83551 0.82647 0.83849 0.85507 0.89396 0.87409 0.76569 0.97339 0.97194 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 7.51 71.98 0.54 -2.81 16 2 C 0.13 3.19 3.38 44.74 0.15 3.35 16 3 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 4 C 0.06 1.27 5.93 71.71 0.42 1.69 16 5 O -0.33 -7.75 9.91 -90.52 -0.90 -8.64 16 6 C 0.09 2.22 5.61 22.52 0.13 2.34 16 7 C -0.14 -2.89 10.00 22.39 0.22 -2.67 16 8 C -0.10 -1.88 10.03 22.26 0.22 -1.65 16 9 C -0.13 -2.82 10.06 22.33 0.22 -2.60 16 10 C -0.10 -2.64 9.71 22.19 0.22 -2.42 16 11 C -0.15 -3.94 5.49 -19.60 -0.11 -4.04 16 12 C 0.15 4.00 5.40 85.88 0.46 4.46 16 13 N -0.62 -19.10 2.69 -819.85 -2.21 -21.31 16 14 C 0.69 27.67 8.16 179.06 1.46 29.13 16 15 O -0.62 -27.88 11.46 -4.00 -0.05 -27.93 16 16 N -0.72 -30.67 5.35 -482.30 -2.58 -33.25 16 17 C 0.25 12.67 4.50 85.63 0.39 13.05 16 18 C -0.54 -30.24 9.83 25.60 0.25 -29.99 16 19 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 20 C 0.03 1.68 5.47 84.66 0.46 2.15 16 21 N -0.93 -55.37 13.96 21.45 0.30 -55.07 16 22 Si 0.94 44.25 27.47 68.60 1.88 46.13 16 23 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.82 6.67 -2.38 -0.02 1.81 16 28 H 0.05 1.61 6.63 -2.39 -0.02 1.59 16 29 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.16 7.87 -2.39 -0.02 1.14 16 31 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.13 3.26 8.01 -2.91 -0.02 3.23 16 35 H 0.09 2.34 5.98 -2.39 -0.01 2.33 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.40 15.31 6.07 -92.71 -0.56 14.75 16 38 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 39 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -68.62 321.54 1.94 -66.69 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.44 Total: 23.39 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.05 Total: 9.99 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.49 Total: -109.62 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.94 Total: -36.57 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -68.62 1.94 -66.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335812326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.122 kcal (2) G-P(sol) polarization free energy of solvation -68.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds