Wall clock time and date at job start Tue Mar 31 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47038 * 2 1 4 4 C 1.50696 * 109.47281 * 240.00071 * 2 1 3 5 5 H 1.08000 * 120.00480 * 239.99924 * 4 2 1 6 6 C 1.37879 * 119.99946 * 60.27496 * 4 2 1 7 7 N 1.31517 * 120.00132 * 359.72372 * 6 4 2 8 8 Si 1.86797 * 120.00177 * 179.72387 * 6 4 2 9 9 H 1.48505 * 109.47154 * 60.00258 * 8 6 4 10 10 H 1.48504 * 109.47380 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47434 * 300.00237 * 8 6 4 12 12 N 1.46504 * 109.47393 * 120.00054 * 2 1 3 13 13 C 1.46497 * 119.99691 * 59.99697 * 12 2 1 14 14 C 1.34774 * 120.00068 * 240.00244 * 12 2 1 15 15 O 1.21279 * 119.99846 * 5.08263 * 14 12 2 16 16 C 1.50698 * 120.00032 * 185.08225 * 14 12 2 17 17 H 1.09009 * 109.68292 * 23.52252 * 16 14 12 18 18 C 1.53298 * 109.68678 * 262.99435 * 16 14 12 19 19 C 1.52935 * 110.43389 * 184.02387 * 18 16 14 20 20 C 1.51402 * 109.75082 * 58.98912 * 19 18 16 21 21 O 1.21441 * 121.34518 * 149.05455 * 20 19 18 22 22 C 1.41521 * 117.31320 * 329.08182 * 20 19 18 23 23 C 1.37271 * 129.84718 * 181.55062 * 22 20 19 24 24 C 1.39920 * 106.75073 * 179.63024 * 23 22 20 25 25 C 1.35942 * 107.98329 * 0.03906 * 24 23 22 26 26 N 1.34092 * 109.01218 * 0.12443 * 25 24 23 27 27 H 1.09000 * 109.47371 * 60.00059 * 1 2 3 28 28 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47437 * 299.99758 * 1 2 3 30 30 H 0.96996 * 119.99984 * 179.97438 * 7 6 4 31 31 H 1.09010 * 109.47028 * 95.30967 * 13 12 2 32 32 H 1.08996 * 109.47378 * 215.30558 * 13 12 2 33 33 H 1.08995 * 109.47333 * 335.31175 * 13 12 2 34 34 H 1.08996 * 109.30945 * 304.28327 * 18 16 14 35 35 H 1.09000 * 109.30792 * 63.69072 * 18 16 14 36 36 H 1.09003 * 109.40358 * 298.91422 * 19 18 16 37 37 H 1.08995 * 109.38996 * 179.05946 * 19 18 16 38 38 H 1.08004 * 126.62298 * 359.65298 * 23 22 20 39 39 H 1.08004 * 126.01080 * 180.02562 * 24 23 22 40 40 H 1.07996 * 125.49157 * 180.16184 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.7039 -0.2360 -2.4827 7 7 0.9478 0.8333 -2.6034 8 14 2.3330 -1.1120 -4.0079 9 1 1.8386 -2.5123 -4.0138 10 1 1.8419 -0.4092 -5.2204 11 1 3.8179 -1.1114 -4.0021 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0103 1.1489 1.9403 16 6 3.3897 -0.7752 3.2530 17 1 3.4566 -1.8380 3.0200 18 6 2.5124 -0.5728 4.4938 19 6 3.1539 -1.2333 5.7149 20 6 4.5245 -0.6378 5.9577 21 8 4.9865 -0.5516 7.0774 22 6 5.2454 -0.1850 4.8271 23 6 6.5014 0.3628 4.7463 24 6 6.7396 0.6279 3.3933 25 6 5.6413 0.2430 2.6906 26 7 4.7281 -0.2472 3.5413 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7171 1.1672 -3.4844 31 1 2.4620 -2.7357 1.0547 32 1 1.5315 -2.2626 2.4965 33 1 0.7365 -2.3249 0.9051 34 1 2.3949 0.4944 4.6819 35 1 1.5317 -1.0149 4.3177 36 1 3.2502 -2.3046 5.5384 37 1 2.5254 -1.0650 6.5893 38 1 7.1758 0.5523 5.5685 39 1 7.6379 1.0621 2.9798 40 1 5.5237 0.3191 1.6198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335870708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:28 Heat of formation + Delta-G solvation = -14.885729 kcal Electronic energy + Delta-G solvation = -23724.588338 eV Core-core repulsion = 20312.672451 eV Total energy + Delta-G solvation = -3411.915887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92103 -39.33050 -38.65191 -35.75675 -35.37440 -33.00502 -31.41352 -29.89516 -29.14143 -27.61683 -26.42560 -25.35342 -23.73968 -22.22990 -21.65758 -20.46872 -18.86893 -18.33066 -17.24707 -17.06486 -16.45177 -15.63934 -15.48498 -15.12574 -14.68520 -14.61935 -14.36111 -14.19936 -13.70731 -13.41227 -12.91128 -12.80048 -12.55652 -12.37311 -12.28091 -12.08610 -11.91584 -11.75073 -11.68766 -11.37250 -11.19477 -10.94881 -10.87204 -10.40895 -10.31501 -9.78132 -9.43604 -9.32701 -8.68664 -8.56692 -8.15159 -7.88894 -6.21163 -4.30784 1.10532 2.44092 2.71368 3.09285 3.18963 3.23796 3.25284 3.26548 3.55579 4.06489 4.25199 4.33833 4.53610 4.64170 4.83157 4.91191 5.09983 5.11698 5.26319 5.33195 5.43855 5.47667 5.54092 5.71013 5.77236 5.79664 6.06647 6.15080 6.27952 6.58160 6.63176 6.80961 6.85829 7.00167 7.14570 7.23327 7.30263 7.54613 7.57330 7.82660 7.99142 8.23140 8.53835 8.75379 9.36506 10.84068 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.004496 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.708460 B = 6226.909151 C = 6800.815172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.582 5.582 13 C 0.078 3.922 14 C 0.498 3.502 15 O -0.529 6.529 16 C 0.109 3.891 17 H 0.112 0.888 18 C -0.118 4.118 19 C -0.166 4.166 20 C 0.426 3.574 21 O -0.468 6.468 22 C -0.114 4.114 23 C -0.082 4.082 24 C -0.233 4.233 25 C 0.081 3.919 26 N -0.403 5.403 27 H 0.095 0.905 28 H 0.031 0.969 29 H 0.012 0.988 30 H 0.266 0.734 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -6.380 11.218 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.066 4.066 14 C 0.281 3.719 15 O -0.406 6.406 16 C 0.003 3.997 17 H 0.130 0.870 18 C -0.157 4.157 19 C -0.204 4.204 20 C 0.307 3.693 21 O -0.346 6.346 22 C -0.221 4.221 23 C -0.109 4.109 24 C -0.257 4.257 25 C -0.058 4.058 26 N -0.079 5.079 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.889 -5.733 11.471 13.145 hybrid contribution 0.201 -0.581 -1.215 1.362 sum 3.090 -6.314 10.256 12.434 Atomic orbital electron populations 1.22108 0.97911 0.99504 1.01083 1.19046 0.91162 0.94468 0.79393 0.91778 1.21221 1.32533 1.13173 0.90114 0.92259 1.24887 0.94788 0.94895 0.99021 1.69859 1.35948 1.22340 1.24142 0.86527 0.79292 0.79557 0.81864 1.20165 1.21071 1.20174 1.48304 1.48192 1.11814 1.23047 1.21699 1.02308 0.82925 0.99621 1.19955 0.80888 0.87728 0.83298 1.90741 1.60366 1.14710 1.74785 1.21829 0.81506 0.99505 0.96829 0.87002 1.21737 0.98902 1.03874 0.91137 1.22188 0.96279 1.02108 0.99829 1.20082 0.87331 0.74969 0.86890 1.90585 1.70892 1.47799 1.25285 1.19910 0.98255 1.18377 0.85548 1.21226 0.94147 0.98315 0.97175 1.21006 1.00147 1.11388 0.93144 1.22003 0.88689 0.98158 0.96946 1.43993 1.11733 1.45544 1.06605 0.88621 0.94950 0.96850 0.92431 0.92902 0.93008 0.89737 0.89468 0.88128 0.87857 0.87828 0.83584 0.83762 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.96 37.16 0.33 -2.93 16 2 C 0.26 6.07 2.62 -69.08 -0.18 5.89 16 3 H 0.06 1.77 6.91 -51.93 -0.36 1.41 16 4 C -0.53 -13.34 8.37 -34.44 -0.29 -13.63 16 5 H 0.06 1.45 7.65 -52.49 -0.40 1.05 16 6 C 0.07 1.73 5.31 -17.82 -0.09 1.64 16 7 N -0.89 -23.83 11.33 55.43 0.63 -23.20 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.58 -10.92 2.75 -175.27 -0.48 -11.41 16 13 C 0.08 1.10 8.78 59.85 0.53 1.62 16 14 C 0.50 9.11 6.27 -10.99 -0.07 9.04 16 15 O -0.53 -11.93 15.29 5.56 0.09 -11.84 16 16 C 0.11 1.50 2.62 -68.80 -0.18 1.32 16 17 H 0.11 1.28 6.63 -51.92 -0.34 0.93 16 18 C -0.12 -1.33 5.13 -26.61 -0.14 -1.47 16 19 C -0.17 -1.67 6.11 -27.57 -0.17 -1.84 16 20 C 0.43 5.91 6.95 -32.71 -0.23 5.69 16 21 O -0.47 -7.61 17.81 5.42 0.10 -7.51 16 22 C -0.11 -1.70 6.50 -83.84 -0.54 -2.25 16 23 C -0.08 -1.18 10.82 -39.30 -0.43 -1.60 16 24 C -0.23 -3.28 10.82 -39.78 -0.43 -3.71 16 25 C 0.08 1.27 10.04 -17.39 -0.17 1.09 16 26 N -0.40 -6.11 2.92 -108.51 -0.32 -6.43 16 27 H 0.10 2.36 6.08 -51.93 -0.32 2.05 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.05 0.52 6.29 -51.93 -0.33 0.20 16 33 H 0.08 1.23 6.44 -51.93 -0.33 0.89 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 0.90 7.50 -51.93 -0.39 0.51 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.15 1.84 8.06 -52.48 -0.42 1.41 16 39 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.17 2.68 7.93 -52.49 -0.42 2.27 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -30.95 327.47 -7.46 -38.41 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.33 Total: 3.22 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.06 Total: -1.14 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.17 Total: -41.04 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.18 Total: -19.35 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.95 -7.46 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335870708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.525 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds