Wall clock time and date at job start Tue Mar 31 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47038 * 2 1 4 4 C 1.50696 * 109.47281 * 240.00071 * 2 1 3 5 5 H 1.08000 * 120.00480 * 239.99924 * 4 2 1 6 6 C 1.37879 * 119.99946 * 60.27496 * 4 2 1 7 7 N 1.31517 * 120.00132 * 359.72372 * 6 4 2 8 8 Si 1.86797 * 120.00177 * 179.72387 * 6 4 2 9 9 H 1.48505 * 109.47154 * 60.00258 * 8 6 4 10 10 H 1.48504 * 109.47380 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47434 * 300.00237 * 8 6 4 12 12 N 1.46504 * 109.47393 * 120.00054 * 2 1 3 13 13 C 1.46497 * 119.99691 * 59.99697 * 12 2 1 14 14 C 1.34774 * 120.00068 * 240.00244 * 12 2 1 15 15 O 1.21279 * 119.99846 * 5.08263 * 14 12 2 16 16 C 1.50698 * 120.00032 * 185.08225 * 14 12 2 17 17 H 1.09009 * 109.68292 * 23.52252 * 16 14 12 18 18 C 1.53298 * 109.68678 * 262.99435 * 16 14 12 19 19 C 1.52935 * 110.43389 * 184.02387 * 18 16 14 20 20 C 1.51402 * 109.75082 * 58.98912 * 19 18 16 21 21 O 1.21441 * 121.34518 * 149.05455 * 20 19 18 22 22 C 1.41521 * 117.31320 * 329.08182 * 20 19 18 23 23 C 1.37271 * 129.84718 * 181.55062 * 22 20 19 24 24 C 1.39920 * 106.75073 * 179.63024 * 23 22 20 25 25 C 1.35942 * 107.98329 * 0.03906 * 24 23 22 26 26 N 1.34092 * 109.01218 * 0.12443 * 25 24 23 27 27 H 1.09000 * 109.47371 * 60.00059 * 1 2 3 28 28 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47437 * 299.99758 * 1 2 3 30 30 H 0.96996 * 119.99984 * 179.97438 * 7 6 4 31 31 H 1.09010 * 109.47028 * 95.30967 * 13 12 2 32 32 H 1.08996 * 109.47378 * 215.30558 * 13 12 2 33 33 H 1.08995 * 109.47333 * 335.31175 * 13 12 2 34 34 H 1.08996 * 109.30945 * 304.28327 * 18 16 14 35 35 H 1.09000 * 109.30792 * 63.69072 * 18 16 14 36 36 H 1.09003 * 109.40358 * 298.91422 * 19 18 16 37 37 H 1.08995 * 109.38996 * 179.05946 * 19 18 16 38 38 H 1.08004 * 126.62298 * 359.65298 * 23 22 20 39 39 H 1.08004 * 126.01080 * 180.02562 * 24 23 22 40 40 H 1.07996 * 125.49157 * 180.16184 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.7039 -0.2360 -2.4827 7 7 0.9478 0.8333 -2.6034 8 14 2.3330 -1.1120 -4.0079 9 1 1.8386 -2.5123 -4.0138 10 1 1.8419 -0.4092 -5.2204 11 1 3.8179 -1.1114 -4.0021 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0103 1.1489 1.9403 16 6 3.3897 -0.7752 3.2530 17 1 3.4566 -1.8380 3.0200 18 6 2.5124 -0.5728 4.4938 19 6 3.1539 -1.2333 5.7149 20 6 4.5245 -0.6378 5.9577 21 8 4.9865 -0.5516 7.0774 22 6 5.2454 -0.1850 4.8271 23 6 6.5014 0.3628 4.7463 24 6 6.7396 0.6279 3.3933 25 6 5.6413 0.2430 2.6906 26 7 4.7281 -0.2472 3.5413 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7171 1.1672 -3.4844 31 1 2.4620 -2.7357 1.0547 32 1 1.5315 -2.2626 2.4965 33 1 0.7365 -2.3249 0.9051 34 1 2.3949 0.4944 4.6819 35 1 1.5317 -1.0149 4.3177 36 1 3.2502 -2.3046 5.5384 37 1 2.5254 -1.0650 6.5893 38 1 7.1758 0.5523 5.5685 39 1 7.6379 1.0621 2.9798 40 1 5.5237 0.3191 1.6198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335870708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:27 Heat of formation + Delta-G solvation = -33.547727 kcal Electronic energy + Delta-G solvation = -23725.397582 eV Core-core repulsion = 20312.672451 eV Total energy + Delta-G solvation = -3412.725132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.04875 -40.75871 -39.76305 -37.31376 -36.53972 -34.78808 -32.52249 -31.53178 -30.30207 -28.74242 -27.70190 -27.28254 -24.90481 -23.24196 -23.13895 -21.72623 -20.29462 -19.43255 -18.62982 -18.38328 -18.11429 -17.15964 -16.63600 -16.37446 -16.14495 -15.87512 -15.61781 -15.32506 -14.90647 -14.79071 -14.48554 -14.12538 -13.73745 -13.50973 -13.42806 -13.31090 -13.17208 -13.06494 -12.95607 -12.88253 -12.70572 -12.65483 -12.23278 -12.19118 -12.14826 -11.22023 -10.87052 -10.82710 -10.53067 -9.81817 -9.45231 -9.30365 -8.16471 -6.33215 0.00235 1.18795 1.42847 1.44374 1.51543 1.56007 1.85805 2.10739 2.21966 2.43288 3.11135 3.12564 3.22718 3.44511 3.66235 3.84733 3.92358 4.14294 4.29711 4.36648 4.40450 4.46156 4.63941 4.70603 4.75252 4.83998 4.88022 4.94672 5.02659 5.04383 5.04980 5.21246 5.42572 5.54165 5.62944 5.69143 5.90632 5.98136 6.09843 6.12538 6.51953 6.65538 6.73898 7.14316 7.39711 8.87565 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.004496 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.708460 B = 6226.909151 C = 6800.815172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.962 3.038 9 H -0.262 1.262 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.587 5.587 13 C 0.069 3.931 14 C 0.494 3.506 15 O -0.583 6.583 16 C 0.115 3.885 17 H 0.147 0.853 18 C -0.114 4.114 19 C -0.153 4.153 20 C 0.422 3.578 21 O -0.497 6.497 22 C -0.124 4.124 23 C -0.096 4.096 24 C -0.228 4.228 25 C 0.054 3.946 26 N -0.408 5.408 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -9.192 12.483 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.186 1.186 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.317 5.317 13 C -0.073 4.073 14 C 0.280 3.720 15 O -0.464 6.464 16 C 0.010 3.990 17 H 0.164 0.836 18 C -0.152 4.152 19 C -0.190 4.190 20 C 0.306 3.694 21 O -0.376 6.376 22 C -0.231 4.231 23 C -0.122 4.122 24 C -0.251 4.251 25 C -0.085 4.085 26 N -0.083 5.083 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.178 0.822 39 H 0.181 0.819 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.589 -8.596 12.747 15.591 hybrid contribution 0.327 0.351 -1.593 1.663 sum 2.916 -8.245 11.155 14.175 Atomic orbital electron populations 1.21893 0.96893 1.00424 1.00047 1.18582 0.91852 0.92140 0.81241 0.97315 1.21512 1.32172 1.13102 0.90869 0.91809 1.25688 0.95037 0.95527 1.01953 1.70011 1.37218 1.23764 1.24519 0.85557 0.78418 0.79051 0.78291 1.18624 1.21283 1.20298 1.48228 1.48180 1.13641 1.21663 1.22049 1.02403 0.79845 1.02993 1.20705 0.79992 0.87270 0.84044 1.90715 1.61997 1.17406 1.76270 1.21971 0.81109 1.00106 0.95771 0.83574 1.21812 1.00018 1.03058 0.90271 1.22188 0.93539 1.03437 0.99801 1.20619 0.88750 0.74200 0.85859 1.90578 1.71970 1.49003 1.26052 1.20312 0.98647 1.18269 0.85877 1.21537 0.94661 0.98422 0.97599 1.21278 1.00353 1.10400 0.93112 1.22013 0.89830 0.99936 0.96733 1.44112 1.12025 1.45639 1.06551 0.91592 0.92878 0.95936 0.92661 0.91826 0.88055 0.90160 0.91844 0.84698 0.84368 0.85664 0.82223 0.81885 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.96 71.98 0.65 -5.30 16 2 C 0.26 12.60 2.62 44.24 0.12 12.72 16 3 H 0.01 0.52 6.91 -2.39 -0.02 0.50 16 4 C -0.54 -27.12 8.37 25.60 0.21 -26.91 16 5 H 0.06 3.08 7.65 -2.91 -0.02 3.06 16 6 C 0.02 0.93 5.31 84.65 0.45 1.38 16 7 N -0.92 -50.72 11.33 21.45 0.24 -50.48 16 8 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 N -0.59 -21.43 2.75 -826.82 -2.28 -23.70 16 13 C 0.07 1.68 8.78 127.77 1.12 2.81 16 14 C 0.49 17.87 6.27 87.66 0.55 18.42 16 15 O -0.58 -27.39 15.29 -3.03 -0.05 -27.43 16 16 C 0.12 2.89 2.62 44.30 0.12 3.01 16 17 H 0.15 2.66 6.63 -2.38 -0.02 2.65 16 18 C -0.11 -2.15 5.13 30.67 0.16 -1.99 16 19 C -0.15 -2.39 6.11 30.05 0.18 -2.21 16 20 C 0.42 10.73 6.95 26.72 0.19 10.92 16 21 O -0.50 -15.27 17.81 -3.53 -0.06 -15.33 16 22 C -0.12 -3.54 6.50 38.63 0.25 -3.29 16 23 C -0.10 -2.68 10.82 22.45 0.24 -2.44 16 24 C -0.23 -6.36 10.82 22.14 0.24 -6.12 16 25 C 0.05 1.70 10.04 83.81 0.84 2.54 16 26 N -0.41 -11.93 2.92 -497.23 -1.45 -13.38 16 27 H 0.07 3.34 6.08 -2.39 -0.01 3.32 16 28 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 29 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.10 1.47 6.29 -2.39 -0.02 1.46 16 33 H 0.08 2.07 6.44 -2.39 -0.02 2.05 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.14 1.67 7.50 -2.39 -0.02 1.65 16 36 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.16 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.16 5.21 7.93 -2.91 -0.02 5.18 16 Total: -1.00 -71.58 327.47 4.80 -66.78 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.05 Total: 17.03 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.31 Total: 3.54 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -3.49 Total: -87.56 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -0.11 Total: -42.77 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -71.58 4.80 -66.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335870708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.234 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds