Wall clock time and date at job start Tue Mar 31 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09009 * 109.46898 * 2 1 4 4 C 1.50696 * 109.47281 * 240.00232 * 2 1 3 5 5 H 1.08003 * 119.99722 * 239.99941 * 4 2 1 6 6 C 1.37870 * 120.00320 * 59.99736 * 4 2 1 7 7 N 1.31519 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46871 * 60.00097 * 8 6 4 10 10 H 1.48495 * 109.47109 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47227 * 300.00130 * 8 6 4 12 12 N 1.46495 * 109.47064 * 119.99641 * 2 1 3 13 13 C 1.46505 * 119.99856 * 60.00516 * 12 2 1 14 14 C 1.34782 * 120.00309 * 239.99795 * 12 2 1 15 15 O 1.21281 * 119.99888 * 4.89109 * 14 12 2 16 16 C 1.50698 * 120.00236 * 184.89039 * 14 12 2 17 17 H 1.09002 * 109.68606 * 334.38403 * 16 14 12 18 18 C 1.53293 * 109.68881 * 94.91551 * 16 14 12 19 19 C 1.52931 * 110.44252 * 176.02378 * 18 16 14 20 20 C 1.51396 * 109.72548 * 300.97175 * 19 18 16 21 21 O 1.21433 * 121.34087 * 210.91106 * 20 19 18 22 22 C 1.41529 * 117.31595 * 30.92676 * 20 19 18 23 23 C 1.37264 * 129.84581 * 178.60016 * 22 20 19 24 24 C 1.39930 * 106.74759 * 180.28047 * 23 22 20 25 25 C 1.35932 * 107.97969 * 359.89971 * 24 23 22 26 26 N 1.34092 * 109.01644 * 359.89376 * 25 24 23 27 27 H 1.08998 * 109.47094 * 300.00198 * 1 2 3 28 28 H 1.09004 * 109.47408 * 59.99784 * 1 2 3 29 29 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99984 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46585 * 264.73490 * 13 12 2 32 32 H 1.08997 * 109.47053 * 144.74073 * 13 12 2 33 33 H 1.09001 * 109.47160 * 24.73636 * 13 12 2 34 34 H 1.09002 * 109.31246 * 296.32266 * 18 16 14 35 35 H 1.08999 * 109.31136 * 55.92493 * 18 16 14 36 36 H 1.09002 * 109.42439 * 61.04495 * 19 18 16 37 37 H 1.08997 * 109.42848 * 180.89108 * 19 18 16 38 38 H 1.07997 * 126.62604 * 0.21920 * 23 22 20 39 39 H 1.08006 * 126.00790 * 179.89494 * 24 23 22 40 40 H 1.08005 * 125.49151 * 179.91742 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0182 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.0133 1.1483 1.9383 16 6 3.3860 -0.7741 3.2555 17 1 2.7674 -1.6388 3.4957 18 6 4.8066 -1.2353 2.9104 19 6 5.4612 -1.9008 4.1217 20 6 5.5103 -0.9237 5.2771 21 8 6.4024 -0.9630 6.1001 22 6 4.4743 0.0371 5.3596 23 6 4.2534 1.0138 6.2984 24 6 3.0875 1.6856 5.9146 25 6 2.6322 1.1145 4.7682 26 7 3.4600 0.1198 4.4169 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7095 1.1618 -3.4845 31 1 0.7905 -2.1447 2.0774 32 1 2.5010 -2.6051 1.9034 33 1 1.4383 -2.5730 0.4758 34 1 4.7640 -1.9481 2.0868 35 1 5.4026 -0.3734 2.6105 36 1 4.8808 -2.7766 4.4119 37 1 6.4746 -2.2078 3.8632 38 1 4.8614 1.2227 7.1662 39 1 2.6297 2.5124 6.4375 40 1 1.7467 1.4140 4.2271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335870709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:30 Heat of formation + Delta-G solvation = -14.844882 kcal Electronic energy + Delta-G solvation = -23711.767774 eV Core-core repulsion = 20299.853659 eV Total energy + Delta-G solvation = -3411.914115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94214 -39.32921 -38.65745 -35.74632 -35.37047 -33.00927 -31.41951 -29.90060 -29.15838 -27.62085 -26.38051 -25.37335 -23.75295 -22.23285 -21.65179 -20.47643 -18.91463 -18.34098 -17.28002 -17.07640 -16.35965 -15.64067 -15.52823 -15.07930 -14.71481 -14.67454 -14.35083 -14.17205 -13.72189 -13.39706 -12.91991 -12.70946 -12.54665 -12.37275 -12.28419 -12.11791 -11.91463 -11.78062 -11.69139 -11.30849 -11.19019 -10.98564 -10.87563 -10.42040 -10.31380 -9.77457 -9.44458 -9.32724 -8.70735 -8.56744 -8.18394 -7.89100 -6.21473 -4.31096 1.09514 2.45769 2.67785 3.03549 3.18402 3.23324 3.24955 3.26075 3.57088 4.07892 4.25905 4.33767 4.57430 4.64588 4.83494 4.90168 5.10186 5.11946 5.23421 5.39352 5.41831 5.46834 5.56278 5.72424 5.74519 5.83625 6.11165 6.13509 6.24966 6.57563 6.63891 6.77869 6.86608 6.97034 7.12966 7.21842 7.31108 7.54207 7.57056 7.82290 7.99669 8.22533 8.53742 8.74891 9.36001 10.83777 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024916 B = 0.004432 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.494511 B = 6316.364645 C = 6907.556673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.064 0.936 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.582 5.582 13 C 0.075 3.925 14 C 0.498 3.502 15 O -0.529 6.529 16 C 0.108 3.892 17 H 0.113 0.887 18 C -0.118 4.118 19 C -0.166 4.166 20 C 0.425 3.575 21 O -0.467 6.467 22 C -0.112 4.112 23 C -0.083 4.083 24 C -0.233 4.233 25 C 0.079 3.921 26 N -0.403 5.403 27 H 0.011 0.989 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 -6.117 11.994 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.313 5.313 13 C -0.069 4.069 14 C 0.281 3.719 15 O -0.406 6.406 16 C 0.003 3.997 17 H 0.130 0.870 18 C -0.156 4.156 19 C -0.204 4.204 20 C 0.307 3.693 21 O -0.345 6.345 22 C -0.219 4.219 23 C -0.110 4.110 24 C -0.257 4.257 25 C -0.061 4.061 26 N -0.079 5.079 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.366 -5.649 11.822 13.314 hybrid contribution 0.039 -0.515 -1.091 1.207 sum 2.405 -6.164 10.731 12.607 Atomic orbital electron populations 1.22086 0.97830 0.99566 1.00997 1.19040 0.91142 0.94487 0.79396 0.91798 1.21224 1.32460 1.13300 0.90146 0.92173 1.24888 0.94766 0.94913 0.99029 1.69860 1.35881 1.22359 1.24138 0.86528 0.79259 0.79574 0.81886 1.20144 1.21070 1.20186 1.48305 1.47755 1.11867 1.23352 1.21756 0.98975 0.82981 1.03191 1.19955 0.80440 0.87734 0.83737 1.90742 1.60189 1.14898 1.74793 1.21852 1.00051 0.92747 0.85092 0.86974 1.21728 0.92432 1.02831 0.98657 1.22196 1.04221 0.99401 0.94595 1.20110 0.82331 0.82095 0.84775 1.90583 1.34238 1.69179 1.40476 1.19929 0.97419 1.07453 0.97060 1.21225 0.97197 0.94210 0.98331 1.20994 0.99996 1.05239 0.99457 1.21913 0.97015 0.90113 0.97014 1.44028 1.20105 1.25680 1.18046 0.96944 0.88645 0.95010 0.92427 0.93378 0.92816 0.89095 0.87852 0.89423 0.87885 0.87767 0.83575 0.83796 0.81609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.97 37.15 0.33 -2.91 16 2 C 0.26 6.07 2.63 -69.09 -0.18 5.89 16 3 H 0.06 1.77 6.91 -51.92 -0.36 1.41 16 4 C -0.53 -13.30 7.95 -34.44 -0.27 -13.57 16 5 H 0.06 1.45 7.42 -52.48 -0.39 1.06 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.82 11.32 55.43 0.63 -23.19 16 8 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.58 -10.90 2.75 -175.26 -0.48 -11.39 16 13 C 0.07 1.05 8.76 59.85 0.52 1.57 16 14 C 0.50 9.12 6.32 -10.98 -0.07 9.05 16 15 O -0.53 -11.94 15.14 5.56 0.08 -11.85 16 16 C 0.11 1.49 2.68 -68.80 -0.18 1.31 16 17 H 0.11 1.24 6.30 -51.93 -0.33 0.91 16 18 C -0.12 -1.43 5.18 -26.62 -0.14 -1.57 16 19 C -0.17 -1.75 6.11 -27.58 -0.17 -1.92 16 20 C 0.43 5.97 6.95 -32.71 -0.23 5.75 16 21 O -0.47 -7.66 17.81 5.42 0.10 -7.57 16 22 C -0.11 -1.65 6.50 -83.84 -0.54 -2.20 16 23 C -0.08 -1.17 10.82 -39.30 -0.43 -1.59 16 24 C -0.23 -3.13 10.83 -39.78 -0.43 -3.56 16 25 C 0.08 1.16 9.99 -17.39 -0.17 0.98 16 26 N -0.40 -5.97 2.92 -108.52 -0.32 -6.29 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 29 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.57 6.38 -51.93 -0.33 0.24 16 33 H 0.09 1.39 7.10 -51.93 -0.37 1.02 16 34 H 0.10 1.08 8.00 -51.93 -0.42 0.66 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.17 2.38 7.87 -52.48 -0.41 1.97 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -30.89 328.63 -7.53 -38.42 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.41 Total: 3.16 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.05 Total: -1.14 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.17 Total: -40.86 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.18 Total: -19.42 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.89 -7.53 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335870709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.574 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds