Wall clock time and date at job start Tue Mar 31 2020 06:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09009 * 109.46898 * 2 1 4 4 C 1.50696 * 109.47281 * 240.00232 * 2 1 3 5 5 H 1.08003 * 119.99722 * 239.99941 * 4 2 1 6 6 C 1.37870 * 120.00320 * 59.99736 * 4 2 1 7 7 N 1.31519 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46871 * 60.00097 * 8 6 4 10 10 H 1.48495 * 109.47109 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47227 * 300.00130 * 8 6 4 12 12 N 1.46495 * 109.47064 * 119.99641 * 2 1 3 13 13 C 1.46505 * 119.99856 * 60.00516 * 12 2 1 14 14 C 1.34782 * 120.00309 * 239.99795 * 12 2 1 15 15 O 1.21281 * 119.99888 * 4.89109 * 14 12 2 16 16 C 1.50698 * 120.00236 * 184.89039 * 14 12 2 17 17 H 1.09002 * 109.68606 * 334.38403 * 16 14 12 18 18 C 1.53293 * 109.68881 * 94.91551 * 16 14 12 19 19 C 1.52931 * 110.44252 * 176.02378 * 18 16 14 20 20 C 1.51396 * 109.72548 * 300.97175 * 19 18 16 21 21 O 1.21433 * 121.34087 * 210.91106 * 20 19 18 22 22 C 1.41529 * 117.31595 * 30.92676 * 20 19 18 23 23 C 1.37264 * 129.84581 * 178.60016 * 22 20 19 24 24 C 1.39930 * 106.74759 * 180.28047 * 23 22 20 25 25 C 1.35932 * 107.97969 * 359.89971 * 24 23 22 26 26 N 1.34092 * 109.01644 * 359.89376 * 25 24 23 27 27 H 1.08998 * 109.47094 * 300.00198 * 1 2 3 28 28 H 1.09004 * 109.47408 * 59.99784 * 1 2 3 29 29 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99984 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46585 * 264.73490 * 13 12 2 32 32 H 1.08997 * 109.47053 * 144.74073 * 13 12 2 33 33 H 1.09001 * 109.47160 * 24.73636 * 13 12 2 34 34 H 1.09002 * 109.31246 * 296.32266 * 18 16 14 35 35 H 1.08999 * 109.31136 * 55.92493 * 18 16 14 36 36 H 1.09002 * 109.42439 * 61.04495 * 19 18 16 37 37 H 1.08997 * 109.42848 * 180.89108 * 19 18 16 38 38 H 1.07997 * 126.62604 * 0.21920 * 23 22 20 39 39 H 1.08006 * 126.00790 * 179.89494 * 24 23 22 40 40 H 1.08005 * 125.49151 * 179.91742 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 1.8258 -2.5202 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0182 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.0133 1.1483 1.9383 16 6 3.3860 -0.7741 3.2555 17 1 2.7674 -1.6388 3.4957 18 6 4.8066 -1.2353 2.9104 19 6 5.4612 -1.9008 4.1217 20 6 5.5103 -0.9237 5.2771 21 8 6.4024 -0.9630 6.1001 22 6 4.4743 0.0371 5.3596 23 6 4.2534 1.0138 6.2984 24 6 3.0875 1.6856 5.9146 25 6 2.6322 1.1145 4.7682 26 7 3.4600 0.1198 4.4169 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7095 1.1618 -3.4845 31 1 0.7905 -2.1447 2.0774 32 1 2.5010 -2.6051 1.9034 33 1 1.4383 -2.5730 0.4758 34 1 4.7640 -1.9481 2.0868 35 1 5.4026 -0.3734 2.6105 36 1 4.8808 -2.7766 4.4119 37 1 6.4746 -2.2078 3.8632 38 1 4.8614 1.2227 7.1662 39 1 2.6297 2.5124 6.4375 40 1 1.7467 1.4140 4.2271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335870709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:29 Heat of formation + Delta-G solvation = -33.309925 kcal Electronic energy + Delta-G solvation = -23712.568478 eV Core-core repulsion = 20299.853659 eV Total energy + Delta-G solvation = -3412.714820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.04903 -40.75487 -39.76703 -37.30598 -36.54915 -34.78266 -32.52758 -31.53102 -30.29540 -28.74485 -27.65086 -27.30441 -24.94156 -23.24103 -23.12295 -21.70146 -20.33254 -19.44315 -18.68577 -18.36348 -18.02310 -17.16096 -16.65587 -16.38083 -16.11933 -15.90283 -15.61062 -15.33380 -14.90089 -14.79134 -14.42685 -14.09006 -13.68360 -13.55916 -13.43740 -13.30352 -13.21741 -13.06688 -12.91412 -12.83428 -12.75808 -12.67837 -12.25075 -12.20015 -12.13665 -11.23082 -10.86504 -10.83092 -10.51952 -9.81559 -9.45217 -9.28669 -8.15604 -6.32212 0.00557 1.23277 1.43576 1.45106 1.51545 1.54828 1.81949 2.13608 2.23353 2.43722 3.10533 3.13732 3.21125 3.46007 3.64867 3.82894 3.90672 4.14359 4.30072 4.37569 4.39801 4.46967 4.67615 4.69894 4.73737 4.83087 4.87819 4.93457 5.03147 5.04729 5.04939 5.22266 5.44893 5.50646 5.63781 5.70142 5.90150 5.98163 6.11772 6.13355 6.51543 6.65124 6.74924 7.14407 7.40446 8.88637 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024916 B = 0.004432 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.494511 B = 6316.364645 C = 6907.556673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.264 3.736 3 H 0.009 0.991 4 C -0.538 4.538 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.260 1.260 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.066 3.934 14 C 0.494 3.506 15 O -0.583 6.583 16 C 0.116 3.884 17 H 0.152 0.848 18 C -0.115 4.115 19 C -0.153 4.153 20 C 0.422 3.578 21 O -0.497 6.497 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.229 4.229 25 C 0.058 3.942 26 N -0.408 5.408 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.059 0.941 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -9.065 12.699 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.027 0.973 4 C -0.576 4.576 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.185 1.185 10 H -0.215 1.215 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.076 4.076 14 C 0.280 3.720 15 O -0.464 6.464 16 C 0.012 3.988 17 H 0.169 0.831 18 C -0.153 4.153 19 C -0.190 4.190 20 C 0.306 3.694 21 O -0.377 6.377 22 C -0.233 4.233 23 C -0.122 4.122 24 C -0.252 4.252 25 C -0.081 4.081 26 N -0.084 5.084 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.078 0.922 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.176 0.824 39 H 0.183 0.817 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.776 -8.648 12.543 15.486 hybrid contribution -0.110 0.479 -1.268 1.360 sum 2.666 -8.169 11.275 14.176 Atomic orbital electron populations 1.21874 0.97018 1.00309 0.99932 1.18576 0.91691 0.92196 0.81321 0.97341 1.21547 1.32061 1.13294 0.90738 0.91284 1.25715 0.95034 0.95565 1.02052 1.70019 1.37259 1.23884 1.24487 0.85537 0.78421 0.79074 0.78162 1.18470 1.21495 1.20211 1.48225 1.47627 1.13733 1.22014 1.22091 1.01831 0.80059 1.03633 1.20697 0.79538 0.87288 0.84503 1.90716 1.61874 1.17564 1.76241 1.21948 1.01424 0.92707 0.82748 0.83100 1.21774 0.90784 1.02478 1.00254 1.22182 1.05746 0.99092 0.91959 1.20594 0.81312 0.82225 0.85301 1.90574 1.35131 1.70032 1.41951 1.20270 0.97730 1.08096 0.97242 1.21542 0.97526 0.94236 0.98871 1.21293 0.99638 1.05305 0.98952 1.22057 0.97463 0.90910 0.97707 1.44126 1.20083 1.25962 1.18221 0.96172 0.91546 0.93147 0.92714 0.91024 0.88509 0.90171 0.85355 0.92232 0.84265 0.86004 0.82354 0.81678 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.97 71.98 0.65 -5.29 16 2 C 0.26 12.58 2.63 44.24 0.12 12.70 16 3 H 0.01 0.50 6.91 -2.38 -0.02 0.49 16 4 C -0.54 -26.79 7.95 25.60 0.20 -26.59 16 5 H 0.07 3.23 7.42 -2.91 -0.02 3.21 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -50.74 11.32 21.45 0.24 -50.50 16 8 Si 0.96 40.55 29.54 68.60 2.03 42.58 16 9 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 12 N -0.59 -21.31 2.75 -826.80 -2.28 -23.58 16 13 C 0.07 1.60 8.76 127.77 1.12 2.72 16 14 C 0.49 17.82 6.32 87.66 0.55 18.37 16 15 O -0.58 -27.30 15.14 -3.03 -0.05 -27.35 16 16 C 0.12 2.92 2.68 44.30 0.12 3.04 16 17 H 0.15 2.60 6.30 -2.39 -0.02 2.59 16 18 C -0.11 -2.43 5.18 30.67 0.16 -2.27 16 19 C -0.15 -2.62 6.11 30.05 0.18 -2.43 16 20 C 0.42 10.98 6.95 26.72 0.19 11.16 16 21 O -0.50 -15.59 17.81 -3.50 -0.06 -15.66 16 22 C -0.13 -3.57 6.50 38.63 0.25 -3.32 16 23 C -0.10 -2.59 10.82 22.45 0.24 -2.35 16 24 C -0.23 -5.96 10.83 22.14 0.24 -5.72 16 25 C 0.06 1.68 9.99 83.81 0.84 2.51 16 26 N -0.41 -11.56 2.92 -497.25 -1.45 -13.01 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 3.38 6.07 -2.38 -0.01 3.36 16 29 H 0.05 2.01 7.67 -2.39 -0.02 1.99 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 1.53 6.38 -2.39 -0.02 1.51 16 33 H 0.08 2.19 7.10 -2.39 -0.02 2.17 16 34 H 0.13 2.11 8.00 -2.39 -0.02 2.09 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 40 H 0.16 4.74 7.87 -2.91 -0.02 4.72 16 Total: -1.00 -70.94 328.63 4.78 -66.16 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.05 Total: 17.53 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 5.30 Total: 3.83 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -3.48 Total: -87.09 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.11 Total: -43.00 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -70.94 4.78 -66.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335870709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.846 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds