Wall clock time and date at job start Tue Mar 31 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.24035 * 2 1 4 4 C 1.52177 * 109.35517 * 240.35424 * 2 1 3 5 5 N 1.46380 * 111.22147 * 178.48678 * 4 2 1 6 6 C 1.34771 * 119.79423 * 243.60275 * 5 4 2 7 7 O 1.21582 * 120.00159 * 354.77651 * 6 5 4 8 8 N 1.34783 * 119.99996 * 174.77039 * 6 5 4 9 9 C 1.46496 * 120.00184 * 184.95830 * 8 6 5 10 10 C 1.50696 * 109.47221 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99807 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00093 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46886 * 60.00295 * 14 12 10 16 16 H 1.48497 * 109.47064 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47241 * 300.00350 * 14 12 10 18 18 C 1.46649 * 120.40860 * 63.62887 * 5 4 2 19 19 C 1.51583 * 108.77679 * 279.73174 * 18 5 4 20 20 C 1.37685 * 120.71522 * 243.08186 * 19 18 5 21 21 C 1.38440 * 119.68039 * 184.60123 * 20 19 18 22 22 C 1.38294 * 119.97411 * 359.92548 * 21 20 19 23 23 C 1.38123 * 120.33663 * 359.04494 * 22 21 20 24 24 C 1.38707 * 118.52579 * 65.68940 * 19 18 5 25 25 O 1.35616 * 120.28944 * 354.19970 * 24 19 18 26 26 H 1.09008 * 109.46805 * 300.36029 * 1 2 3 27 27 H 1.08995 * 109.47195 * 60.35867 * 1 2 3 28 28 H 1.08998 * 109.47099 * 180.36573 * 1 2 3 29 29 H 1.09002 * 109.12358 * 58.04063 * 4 2 1 30 30 H 1.09000 * 109.12687 * 298.94151 * 4 2 1 31 31 H 0.97003 * 119.99643 * 4.96210 * 8 6 5 32 32 H 1.09001 * 109.47064 * 300.00569 * 9 8 6 33 33 H 1.09004 * 109.46648 * 60.00487 * 9 8 6 34 34 H 0.97005 * 119.99762 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.58881 * 159.94762 * 18 5 4 36 36 H 1.09000 * 109.59083 * 39.52020 * 18 5 4 37 37 H 1.08000 * 120.16317 * 4.58264 * 20 19 18 38 38 H 1.07996 * 120.01427 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.82996 * 179.02022 * 22 21 20 40 40 H 1.07996 * 120.07321 * 180.16330 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8891 1.0291 0.0000 4 6 2.0343 -0.7102 -1.2478 5 7 3.4969 -0.7025 -1.3072 6 6 4.1230 -0.0548 -2.3096 7 8 3.4754 0.4397 -3.2120 8 7 5.4671 0.0451 -2.3115 9 6 6.1411 0.8406 -3.3407 10 6 7.6308 0.7899 -3.1193 11 1 8.0352 0.2216 -2.2947 12 6 8.4776 1.4682 -3.9701 13 7 7.9852 2.1598 -4.9744 14 14 10.3244 1.4048 -3.6961 15 1 10.7885 -0.0035 -3.7757 16 1 11.0075 2.2113 -4.7392 17 1 10.6451 1.9567 -2.3553 18 6 4.2850 -1.3958 -0.2831 19 6 4.3681 -0.5151 0.9478 20 6 5.5812 -0.0361 1.3892 21 6 5.6449 0.6865 2.5683 22 6 4.4930 0.9251 3.2955 23 6 3.2732 0.4628 2.8417 24 6 3.2027 -0.2476 1.6509 25 8 2.0047 -0.6683 1.1746 26 1 -0.3633 0.5195 0.8868 27 1 -0.3633 0.5082 -0.8931 28 1 -0.3633 -1.0276 0.0066 29 1 1.6383 -0.2068 -2.1298 30 1 1.6825 -1.7418 -1.2384 31 1 5.9882 -0.4099 -1.6315 32 1 5.9055 0.4358 -4.3250 33 1 5.8003 1.8743 -3.2818 34 1 8.5810 2.6367 -5.5732 35 1 5.2883 -1.5888 -0.6626 36 1 3.8018 -2.3384 -0.0260 37 1 6.4787 -0.2235 0.8185 38 1 6.5936 1.0643 2.9198 39 1 4.5477 1.4755 4.2231 40 1 2.3759 0.6539 3.4116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336567184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:31 Heat of formation + Delta-G solvation = -33.898714 kcal Electronic energy + Delta-G solvation = -23553.415876 eV Core-core repulsion = 20140.675525 eV Total energy + Delta-G solvation = -3412.740352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.79882 -39.05085 -37.68887 -35.27106 -34.33049 -33.07522 -32.15192 -31.21833 -29.49503 -27.66974 -26.60011 -25.37040 -22.96015 -22.43169 -21.79590 -21.05660 -19.37652 -18.50048 -17.68799 -16.29007 -16.24575 -15.89060 -15.56526 -15.33088 -14.76723 -14.57844 -14.27859 -13.97383 -13.61163 -13.40605 -13.09384 -12.96748 -12.55504 -12.43778 -12.12562 -12.00524 -11.93055 -11.73586 -11.53881 -11.43758 -10.99976 -10.90342 -10.86791 -10.31238 -10.07496 -9.47204 -9.38500 -8.92965 -8.73893 -8.57300 -8.45643 -7.76863 -6.15668 -4.22472 1.11941 1.28926 3.07744 3.25088 3.29967 3.31168 3.34984 3.82091 3.94370 4.30929 4.61967 4.62466 4.83573 4.88014 4.93451 5.02775 5.05601 5.16555 5.20454 5.29827 5.37132 5.47265 5.54381 5.60146 5.68070 5.84721 5.89007 5.93207 5.99221 6.28885 6.42945 6.47527 6.68599 6.69937 7.08369 7.46258 7.48654 7.51758 7.56383 7.82454 8.00735 8.72935 8.86722 9.27713 9.45846 10.94542 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.004891 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.284537 B = 5723.757159 C = 6946.450188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.068 0.932 4 C 0.107 3.893 5 N -0.634 5.634 6 C 0.696 3.304 7 O -0.596 6.596 8 N -0.726 5.726 9 C 0.266 3.734 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.065 3.935 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.156 3.844 19 C -0.136 4.136 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.106 4.106 23 C -0.139 4.139 24 C 0.110 3.890 25 O -0.326 6.326 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.385 0.615 32 H 0.026 0.974 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 -5.810 16.074 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.086 0.914 4 C -0.017 4.017 5 N -0.372 5.372 6 C 0.398 3.602 7 O -0.475 6.475 8 N -0.379 5.379 9 C 0.145 3.855 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.522 5.522 14 Si 0.730 3.270 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.033 3.967 19 C -0.138 4.138 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.124 4.124 23 C -0.157 4.157 24 C 0.066 3.934 25 O -0.244 6.244 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.219 0.781 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.514 -5.435 15.233 19.291 hybrid contribution 1.465 -0.016 0.436 1.529 sum -9.049 -5.450 15.669 18.897 Atomic orbital electron populations 1.21797 0.92159 1.03288 1.02998 1.22735 0.95122 0.96214 0.84079 0.91372 1.21639 0.79946 1.01499 0.98648 1.47095 1.05773 1.57368 1.26985 1.16115 0.83154 0.79152 0.81808 1.90851 1.65515 1.54033 1.37107 1.45871 1.03522 1.54161 1.34373 1.18994 0.90663 0.90132 0.85670 1.21149 0.90629 1.32421 1.13811 0.92116 1.24927 0.99347 0.94840 0.94768 1.69969 1.35596 1.31028 1.15633 0.86487 0.84321 0.78196 0.77969 1.20067 1.21063 1.20087 1.20550 0.97158 0.93896 0.85130 1.20868 0.93540 1.01037 0.98340 1.20968 0.96952 0.96589 0.95902 1.21225 0.98636 0.99301 0.95329 1.21007 0.92044 0.99506 0.99832 1.21202 0.98639 0.98333 0.97525 1.18490 0.84882 0.96255 0.93790 1.86083 1.33263 1.60483 1.44528 0.91599 0.90312 0.91383 0.87460 0.91129 0.78083 0.95623 0.95849 0.92400 0.89279 0.89342 0.85037 0.85577 0.85768 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.54 37.15 0.35 -0.99 16 2 C 0.08 0.95 3.12 -27.15 -0.08 0.86 16 3 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 4 C 0.11 1.51 5.52 -4.53 -0.02 1.48 16 5 N -0.63 -10.50 2.69 -180.76 -0.49 -10.99 16 6 C 0.70 14.90 8.26 -86.92 -0.72 14.18 16 7 O -0.60 -15.01 15.66 5.29 0.08 -14.92 16 8 N -0.73 -15.91 5.42 -66.42 -0.36 -16.27 16 9 C 0.27 7.17 5.43 -5.20 -0.03 7.14 16 10 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 11 H 0.06 1.52 7.60 -52.48 -0.40 1.13 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.88 -26.07 13.29 55.43 0.74 -25.34 16 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.16 2.15 5.49 -4.68 -0.03 2.13 16 19 C -0.14 -1.87 5.49 -104.22 -0.57 -2.44 16 20 C -0.09 -1.11 9.71 -39.71 -0.39 -1.49 16 21 C -0.13 -1.47 10.06 -39.49 -0.40 -1.86 16 22 C -0.11 -1.15 10.02 -39.60 -0.40 -1.54 16 23 C -0.14 -1.64 10.00 -39.40 -0.39 -2.04 16 24 C 0.11 1.49 5.61 -39.18 -0.22 1.27 16 25 O -0.33 -4.34 9.54 -18.55 -0.18 -4.51 16 26 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.11 1.65 6.86 -51.93 -0.36 1.30 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.38 7.32 5.91 -40.82 -0.24 7.08 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.09 1.17 5.82 -51.93 -0.30 0.87 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.13 1.61 8.01 -52.49 -0.42 1.19 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -32.92 331.99 -9.02 -41.94 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.49 Total: 5.96 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -3.31 Total: 3.42 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.11 Total: -52.59 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.09 Total: -19.44 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.92 -9.02 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336567184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.045 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds