Wall clock time and date at job start Tue Mar 31 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.24035 * 2 1 4 4 C 1.52177 * 109.35517 * 240.35424 * 2 1 3 5 5 N 1.46380 * 111.22147 * 178.48678 * 4 2 1 6 6 C 1.34771 * 119.79423 * 243.60275 * 5 4 2 7 7 O 1.21582 * 120.00159 * 354.77651 * 6 5 4 8 8 N 1.34783 * 119.99996 * 174.77039 * 6 5 4 9 9 C 1.46496 * 120.00184 * 184.95830 * 8 6 5 10 10 C 1.50696 * 109.47221 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99669 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00098 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99807 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00093 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46886 * 60.00295 * 14 12 10 16 16 H 1.48497 * 109.47064 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47241 * 300.00350 * 14 12 10 18 18 C 1.46649 * 120.40860 * 63.62887 * 5 4 2 19 19 C 1.51583 * 108.77679 * 279.73174 * 18 5 4 20 20 C 1.37685 * 120.71522 * 243.08186 * 19 18 5 21 21 C 1.38440 * 119.68039 * 184.60123 * 20 19 18 22 22 C 1.38294 * 119.97411 * 359.92548 * 21 20 19 23 23 C 1.38123 * 120.33663 * 359.04494 * 22 21 20 24 24 C 1.38707 * 118.52579 * 65.68940 * 19 18 5 25 25 O 1.35616 * 120.28944 * 354.19970 * 24 19 18 26 26 H 1.09008 * 109.46805 * 300.36029 * 1 2 3 27 27 H 1.08995 * 109.47195 * 60.35867 * 1 2 3 28 28 H 1.08998 * 109.47099 * 180.36573 * 1 2 3 29 29 H 1.09002 * 109.12358 * 58.04063 * 4 2 1 30 30 H 1.09000 * 109.12687 * 298.94151 * 4 2 1 31 31 H 0.97003 * 119.99643 * 4.96210 * 8 6 5 32 32 H 1.09001 * 109.47064 * 300.00569 * 9 8 6 33 33 H 1.09004 * 109.46648 * 60.00487 * 9 8 6 34 34 H 0.97005 * 119.99762 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.58881 * 159.94762 * 18 5 4 36 36 H 1.09000 * 109.59083 * 39.52020 * 18 5 4 37 37 H 1.08000 * 120.16317 * 4.58264 * 20 19 18 38 38 H 1.07996 * 120.01427 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.82996 * 179.02022 * 22 21 20 40 40 H 1.07996 * 120.07321 * 180.16330 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8891 1.0291 0.0000 4 6 2.0343 -0.7102 -1.2478 5 7 3.4969 -0.7025 -1.3072 6 6 4.1230 -0.0548 -2.3096 7 8 3.4754 0.4397 -3.2120 8 7 5.4671 0.0451 -2.3115 9 6 6.1411 0.8406 -3.3407 10 6 7.6308 0.7899 -3.1193 11 1 8.0352 0.2216 -2.2947 12 6 8.4776 1.4682 -3.9701 13 7 7.9852 2.1598 -4.9744 14 14 10.3244 1.4048 -3.6961 15 1 10.7885 -0.0035 -3.7757 16 1 11.0075 2.2113 -4.7392 17 1 10.6451 1.9567 -2.3553 18 6 4.2850 -1.3958 -0.2831 19 6 4.3681 -0.5151 0.9478 20 6 5.5812 -0.0361 1.3892 21 6 5.6449 0.6865 2.5683 22 6 4.4930 0.9251 3.2955 23 6 3.2732 0.4628 2.8417 24 6 3.2027 -0.2476 1.6509 25 8 2.0047 -0.6683 1.1746 26 1 -0.3633 0.5195 0.8868 27 1 -0.3633 0.5082 -0.8931 28 1 -0.3633 -1.0276 0.0066 29 1 1.6383 -0.2068 -2.1298 30 1 1.6825 -1.7418 -1.2384 31 1 5.9882 -0.4099 -1.6315 32 1 5.9055 0.4358 -4.3250 33 1 5.8003 1.8743 -3.2818 34 1 8.5810 2.6367 -5.5732 35 1 5.2883 -1.5888 -0.6626 36 1 3.8018 -2.3384 -0.0260 37 1 6.4787 -0.2235 0.8185 38 1 6.5936 1.0643 2.9198 39 1 4.5477 1.4755 4.2231 40 1 2.3759 0.6539 3.4116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336567184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:31 Heat of formation + Delta-G solvation = -55.046149 kcal Electronic energy + Delta-G solvation = -23554.332898 eV Core-core repulsion = 20140.675525 eV Total energy + Delta-G solvation = -3413.657373 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98195 -40.52944 -38.67187 -36.69249 -36.25381 -34.50966 -33.76837 -32.25783 -30.48325 -29.46888 -27.81905 -26.70616 -24.57730 -23.64290 -23.03466 -22.05140 -21.04041 -19.88779 -18.90927 -18.04838 -17.68375 -17.12385 -16.76812 -16.64456 -16.41419 -15.84086 -15.60223 -15.19737 -15.03272 -14.72298 -14.50006 -14.07465 -13.92744 -13.88270 -13.45097 -13.26662 -13.00585 -12.92111 -12.90387 -12.67927 -12.55327 -12.45580 -12.21776 -11.89635 -11.50674 -11.26763 -11.09696 -10.79366 -10.14936 -9.86876 -9.55429 -9.46373 -8.27826 -6.44617 0.15639 0.34761 1.43637 1.48224 1.55905 1.69245 2.10760 2.35123 2.39622 2.90965 3.07207 3.18442 3.60021 3.76409 3.84962 3.95057 4.02254 4.15021 4.24060 4.30395 4.44684 4.53552 4.58134 4.62425 4.73462 4.91646 4.95197 4.99324 5.05677 5.19901 5.25366 5.38456 5.41470 5.45809 5.50147 5.54103 5.66706 5.79841 5.82960 6.00893 6.48178 6.65389 7.08037 7.25128 7.60084 8.84358 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.004891 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.284537 B = 5723.757159 C = 6946.450188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.045 0.955 4 C 0.101 3.899 5 N -0.624 5.624 6 C 0.693 3.307 7 O -0.641 6.641 8 N -0.720 5.720 9 C 0.286 3.714 10 C -0.554 4.554 11 H 0.083 0.917 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.985 3.015 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.261 1.261 18 C 0.154 3.846 19 C -0.154 4.154 20 C -0.101 4.101 21 C -0.131 4.131 22 C -0.101 4.101 23 C -0.142 4.142 24 C 0.089 3.911 25 O -0.326 6.326 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.400 0.600 32 H -0.014 1.014 33 H -0.016 1.016 34 H 0.269 0.731 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 -6.610 18.810 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.025 3.975 3 H 0.063 0.937 4 C -0.022 4.022 5 N -0.361 5.361 6 C 0.395 3.605 7 O -0.524 6.524 8 N -0.375 5.375 9 C 0.163 3.837 10 C -0.592 4.592 11 H 0.101 0.899 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.807 3.193 15 H -0.186 1.186 16 H -0.211 1.211 17 H -0.185 1.185 18 C 0.031 3.969 19 C -0.155 4.155 20 C -0.120 4.120 21 C -0.149 4.149 22 C -0.119 4.119 23 C -0.161 4.161 24 C 0.045 3.955 25 O -0.244 6.244 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.004 0.996 33 H 0.002 0.998 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.771 -6.287 18.049 21.465 hybrid contribution 1.147 0.230 -0.351 1.222 sum -8.624 -6.057 17.698 20.598 Atomic orbital electron populations 1.21793 0.89361 1.04469 1.03910 1.22694 0.97089 0.94496 0.83256 0.93679 1.21890 0.78300 1.03042 0.98996 1.47107 1.06955 1.55967 1.26024 1.16279 0.82751 0.79158 0.82349 1.90813 1.66324 1.55972 1.39257 1.45476 1.04050 1.54060 1.33874 1.18426 0.91667 0.88317 0.85249 1.21509 0.90399 1.32713 1.14548 0.89919 1.26037 1.05190 0.93977 0.94098 1.70140 1.37811 1.32057 1.16862 0.85214 0.76987 0.78778 0.78287 1.18642 1.21128 1.18522 1.20766 0.97112 0.94521 0.84474 1.20875 0.94231 1.01946 0.98490 1.21151 0.96823 0.97182 0.96829 1.21549 0.99992 0.98595 0.94736 1.21391 0.91263 0.98657 1.00589 1.21488 0.99915 0.97675 0.96993 1.18757 0.84806 0.97265 0.94669 1.86090 1.33219 1.60666 1.44375 0.90508 0.89590 0.90045 0.89167 0.88648 0.76225 0.99589 0.99820 0.92237 0.89005 0.87288 0.84848 0.83507 0.82696 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.54 71.98 0.69 -1.64 16 2 C 0.08 1.99 3.12 30.32 0.09 2.08 16 3 H 0.04 1.30 7.88 -2.39 -0.02 1.29 16 4 C 0.10 2.83 5.52 86.13 0.48 3.30 16 5 N -0.62 -20.78 2.69 -844.07 -2.27 -23.05 16 6 C 0.69 30.73 8.26 179.05 1.48 32.21 16 7 O -0.64 -34.02 15.66 -3.97 -0.06 -34.08 16 8 N -0.72 -32.52 5.42 -482.31 -2.61 -35.13 16 9 C 0.29 16.17 5.43 85.63 0.47 16.63 16 10 C -0.55 -30.26 9.28 25.60 0.24 -30.02 16 11 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 12 C 0.01 0.37 5.46 84.65 0.46 0.84 16 13 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 14 Si 0.98 42.03 29.54 68.60 2.03 44.05 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 16 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 C 0.15 4.10 5.49 85.89 0.47 4.57 16 19 C -0.15 -4.07 5.49 -19.60 -0.11 -4.18 16 20 C -0.10 -2.50 9.71 22.19 0.22 -2.28 16 21 C -0.13 -2.72 10.06 22.33 0.22 -2.50 16 22 C -0.10 -1.90 10.02 22.26 0.22 -1.68 16 23 C -0.14 -3.06 10.00 22.39 0.22 -2.84 16 24 C 0.09 2.29 5.61 22.53 0.13 2.42 16 25 O -0.33 -8.17 9.54 -89.27 -0.85 -9.02 16 26 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 2.87 6.86 -2.39 -0.02 2.85 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.40 15.31 5.91 -92.71 -0.55 14.77 16 32 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 33 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 34 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 35 H 0.09 2.35 5.82 -2.39 -0.01 2.34 16 36 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.13 3.12 8.01 -2.91 -0.02 3.10 16 38 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -73.84 331.99 2.29 -71.56 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.50 Total: 24.74 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 5.28 Total: 16.92 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.60 Total: -114.17 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.91 Total: -43.10 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -73.84 2.29 -71.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336567184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.510 kcal (2) G-P(sol) polarization free energy of solvation -73.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds