Wall clock time and date at job start Tue Mar 31 2020 06:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46644 * 299.99282 * 15 13 12 17 17 C 1.52999 * 109.47285 * 59.99586 * 15 13 12 18 18 N 1.46501 * 109.46963 * 179.97438 * 15 13 12 19 19 C 1.34772 * 120.00032 * 155.00074 * 18 15 13 20 20 O 1.21551 * 120.00234 * 359.97438 * 19 18 15 21 21 C 1.47848 * 119.99939 * 179.97438 * 19 18 15 22 22 C 1.39574 * 120.14220 * 359.72340 * 21 19 18 23 23 C 1.37959 * 119.84984 * 179.79207 * 22 21 19 24 24 C 1.38363 * 120.14519 * 0.48210 * 23 22 21 25 25 C 1.38357 * 120.29175 * 359.74415 * 24 23 22 26 26 C 1.37959 * 120.14425 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 32 32 H 1.08990 * 109.47403 * 299.99973 * 17 15 13 33 33 H 1.09007 * 109.46839 * 60.00066 * 17 15 13 34 34 H 1.09002 * 109.46731 * 179.97438 * 17 15 13 35 35 H 0.97003 * 119.99863 * 334.99699 * 18 15 13 36 36 H 1.07993 * 120.07823 * 0.02562 * 22 21 19 37 37 H 1.08006 * 119.92932 * 180.22955 * 23 22 21 38 38 H 1.08002 * 119.85177 * 179.72296 * 24 23 22 39 39 H 1.07995 * 119.92550 * 179.97438 * 25 24 23 40 40 H 1.08005 * 120.07060 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 1.9759 -1.5506 3.8326 17 6 4.0513 -1.2799 3.3223 18 7 2.6988 0.2127 4.7090 19 6 2.6193 -0.2424 5.9751 20 8 2.5057 -1.4339 6.1867 21 6 2.6703 0.7078 7.1067 22 6 2.8065 2.0761 6.8674 23 6 2.8491 2.9577 7.9277 24 6 2.7671 2.4873 9.2263 25 6 2.6367 1.1317 9.4705 26 6 2.5881 0.2398 8.4191 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 2.2491 -1.6318 1.1527 32 1 4.0145 -1.9803 2.4880 33 1 4.7242 -0.4581 3.0774 34 1 4.4144 -1.7934 4.2125 35 1 2.7892 1.1636 4.5402 36 1 2.8746 2.4442 5.8544 37 1 2.9508 4.0172 7.7438 38 1 2.8055 3.1813 10.0529 39 1 2.5737 0.7709 10.4865 40 1 2.4867 -0.8182 8.6111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338074257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:09 Heat of formation + Delta-G solvation = -54.982739 kcal Electronic energy + Delta-G solvation = -22350.292593 eV Core-core repulsion = 18936.637969 eV Total energy + Delta-G solvation = -3413.654624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45256 -39.21374 -38.15900 -35.24274 -34.58353 -32.66350 -31.91651 -31.16715 -30.17585 -28.53326 -25.32119 -24.89979 -23.54064 -22.68610 -21.14645 -20.29677 -19.56047 -18.60834 -17.06819 -16.56633 -16.04657 -15.51511 -15.39744 -15.17301 -14.85934 -14.61327 -14.43167 -13.99485 -13.77486 -13.41621 -13.24047 -12.90928 -12.56063 -12.26623 -12.19587 -11.90365 -11.80459 -11.45435 -11.31766 -11.14841 -10.98605 -10.79326 -10.37784 -10.27495 -10.02128 -9.39968 -9.24836 -9.19775 -9.11181 -8.94084 -8.60009 -8.02692 -6.16487 -4.26244 0.64745 1.11878 2.75649 3.00348 3.20117 3.23578 3.28883 3.30199 3.69399 3.99808 4.33120 4.53100 4.59943 4.68863 4.88815 5.12022 5.15520 5.17627 5.20141 5.24269 5.34305 5.55524 5.69475 5.72457 5.85834 6.07951 6.15372 6.18010 6.19805 6.37598 6.62613 6.77036 6.90651 7.08836 7.34166 7.46552 7.51235 7.63385 7.84526 8.09154 8.15041 8.54448 8.69769 8.96951 9.41125 10.89424 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035432 B = 0.002954 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.056172 B = 9475.250494 C = 9859.951778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.499 3.501 14 O -0.554 6.554 15 C 0.121 3.879 16 H 0.111 0.889 17 C -0.157 4.157 18 N -0.703 5.703 19 C 0.560 3.440 20 O -0.542 6.542 21 C -0.132 4.132 22 C -0.083 4.083 23 C -0.128 4.128 24 C -0.097 4.097 25 C -0.131 4.131 26 C -0.061 4.061 27 H 0.091 0.909 28 H 0.014 0.986 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.391 0.609 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.409 0.591 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 0.814 19.665 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.347 5.347 13 C 0.283 3.717 14 O -0.433 6.433 15 C 0.013 3.987 16 H 0.128 0.872 17 C -0.215 4.215 18 N -0.356 5.356 19 C 0.347 3.653 20 O -0.421 6.421 21 C -0.135 4.135 22 C -0.102 4.102 23 C -0.146 4.146 24 C -0.115 4.115 25 C -0.149 4.149 26 C -0.080 4.080 27 H 0.110 0.890 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.224 0.776 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.247 0.753 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.412 0.939 19.616 20.128 hybrid contribution 0.381 -0.393 -1.030 1.167 sum 4.793 0.546 18.586 19.202 Atomic orbital electron populations 1.22091 0.98355 0.99261 1.00967 1.18789 0.91092 0.93986 0.79776 0.93248 1.21167 1.32661 1.13320 0.90251 0.92020 1.24886 0.94758 0.94939 0.99083 1.69891 1.35728 1.22379 1.24070 0.86489 0.79169 0.79611 0.81729 1.20110 1.21118 1.20152 1.46497 1.64297 1.13718 1.10206 1.20328 0.78909 0.87617 0.84867 1.90641 1.51789 1.15985 1.84895 1.20890 0.99294 0.92779 0.85781 0.87167 1.22102 0.94929 1.01691 1.02817 1.45681 1.73696 1.11675 1.04544 1.18253 0.76258 0.88054 0.82699 1.90754 1.50048 1.16236 1.85028 1.19959 1.06057 0.93533 0.93910 1.21451 0.96616 0.92230 0.99920 1.21146 1.00900 1.00030 0.92479 1.21386 0.97370 0.95751 0.97027 1.21157 1.01290 0.93303 0.99156 1.21295 0.95023 1.00752 0.90908 0.89034 0.96661 0.95349 0.92464 0.77584 0.90577 0.91778 0.91319 0.75256 0.85195 0.85280 0.85634 0.85371 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.57 2.56 -69.08 -0.18 6.39 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.87 8.73 -34.44 -0.30 -14.17 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.51 11.32 55.43 0.63 -23.88 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.70 -14.03 4.96 -54.93 -0.27 -14.30 16 13 C 0.50 9.53 7.19 -10.98 -0.08 9.45 16 14 O -0.55 -12.35 15.50 5.56 0.09 -12.26 16 15 C 0.12 1.84 2.99 -69.08 -0.21 1.64 16 16 H 0.11 1.68 7.58 -51.93 -0.39 1.28 16 17 C -0.16 -2.05 9.38 37.16 0.35 -1.70 16 18 N -0.70 -10.14 4.90 -55.87 -0.27 -10.42 16 19 C 0.56 8.16 7.74 -12.33 -0.10 8.06 16 20 O -0.54 -9.22 16.01 5.32 0.09 -9.14 16 21 C -0.13 -1.60 5.87 -104.97 -0.62 -2.22 16 22 C -0.08 -0.87 9.54 -39.19 -0.37 -1.24 16 23 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 24 C -0.10 -0.76 10.04 -39.49 -0.40 -1.15 16 25 C -0.13 -1.10 10.03 -39.64 -0.40 -1.50 16 26 C -0.06 -0.66 9.60 -39.19 -0.38 -1.03 16 27 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 6.78 7.96 -40.82 -0.32 6.46 16 32 H 0.08 0.91 7.56 -51.93 -0.39 0.52 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.41 5.65 5.83 -40.82 -0.24 5.42 16 36 H 0.13 1.25 6.41 -52.49 -0.34 0.91 16 37 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.14 1.44 7.65 -52.48 -0.40 1.04 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -31.36 341.22 -7.74 -39.10 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.30 Total: 11.03 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.82 Total: -0.59 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.08 Total: -48.59 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.17 Total: -21.40 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.36 -7.74 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338074257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.885 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds