Wall clock time and date at job start Tue Mar 31 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46644 * 299.99282 * 15 13 12 17 17 C 1.52999 * 109.47285 * 59.99586 * 15 13 12 18 18 N 1.46501 * 109.46963 * 179.97438 * 15 13 12 19 19 C 1.34772 * 120.00032 * 155.00074 * 18 15 13 20 20 O 1.21551 * 120.00234 * 359.97438 * 19 18 15 21 21 C 1.47848 * 119.99939 * 179.97438 * 19 18 15 22 22 C 1.39574 * 120.14220 * 359.72340 * 21 19 18 23 23 C 1.37959 * 119.84984 * 179.79207 * 22 21 19 24 24 C 1.38363 * 120.14519 * 0.48210 * 23 22 21 25 25 C 1.38357 * 120.29175 * 359.74415 * 24 23 22 26 26 C 1.37959 * 120.14425 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 32 32 H 1.08990 * 109.47403 * 299.99973 * 17 15 13 33 33 H 1.09007 * 109.46839 * 60.00066 * 17 15 13 34 34 H 1.09002 * 109.46731 * 179.97438 * 17 15 13 35 35 H 0.97003 * 119.99863 * 334.99699 * 18 15 13 36 36 H 1.07993 * 120.07823 * 0.02562 * 22 21 19 37 37 H 1.08006 * 119.92932 * 180.22955 * 23 22 21 38 38 H 1.08002 * 119.85177 * 179.72296 * 24 23 22 39 39 H 1.07995 * 119.92550 * 179.97438 * 25 24 23 40 40 H 1.08005 * 120.07060 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 1.9759 -1.5506 3.8326 17 6 4.0513 -1.2799 3.3223 18 7 2.6988 0.2127 4.7090 19 6 2.6193 -0.2424 5.9751 20 8 2.5057 -1.4339 6.1867 21 6 2.6703 0.7078 7.1067 22 6 2.8065 2.0761 6.8674 23 6 2.8491 2.9577 7.9277 24 6 2.7671 2.4873 9.2263 25 6 2.6367 1.1317 9.4705 26 6 2.5881 0.2398 8.4191 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 2.2491 -1.6318 1.1527 32 1 4.0145 -1.9803 2.4880 33 1 4.7242 -0.4581 3.0774 34 1 4.4144 -1.7934 4.2125 35 1 2.7892 1.1636 4.5402 36 1 2.8746 2.4442 5.8544 37 1 2.9508 4.0172 7.7438 38 1 2.8055 3.1813 10.0529 39 1 2.5737 0.7709 10.4865 40 1 2.4867 -0.8182 8.6111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338074257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:08 Heat of formation + Delta-G solvation = -75.768330 kcal Electronic energy + Delta-G solvation = -22351.193924 eV Core-core repulsion = 18936.637969 eV Total energy + Delta-G solvation = -3414.555954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61630 -40.54554 -39.17592 -36.92195 -36.04541 -34.44852 -33.02389 -31.89419 -31.41158 -30.16234 -27.35301 -26.05607 -24.65215 -23.48032 -22.72071 -21.44418 -21.18743 -19.81805 -18.56788 -17.72520 -17.41287 -17.07186 -16.73376 -16.35965 -16.22110 -15.79066 -15.49387 -15.34254 -14.83925 -14.66675 -14.48266 -14.30779 -13.88623 -13.65961 -13.48645 -13.31093 -13.01330 -12.89144 -12.74260 -12.67763 -12.57433 -12.27815 -12.15899 -12.02443 -11.17106 -11.12343 -10.86096 -10.59576 -10.35226 -9.95892 -9.91959 -9.82166 -8.17833 -6.35152 -0.16243 0.41070 1.46095 1.47671 1.55294 1.62070 1.75178 1.86593 2.37010 2.58615 2.89420 3.12974 3.55971 3.76319 3.90508 4.00791 4.02073 4.08667 4.24911 4.46796 4.51911 4.61737 4.71841 4.75685 4.85662 4.90012 5.05838 5.07269 5.12807 5.19464 5.35164 5.40834 5.44464 5.50319 5.56894 5.65856 5.86324 5.94805 6.07733 6.36805 6.71233 6.82028 7.03523 7.28143 7.43477 8.88219 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035432 B = 0.002954 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.056172 B = 9475.250494 C = 9859.951778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.272 3.728 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.695 5.695 13 C 0.500 3.500 14 O -0.588 6.588 15 C 0.132 3.868 16 H 0.114 0.886 17 C -0.150 4.150 18 N -0.703 5.703 19 C 0.560 3.440 20 O -0.573 6.573 21 C -0.157 4.157 22 C -0.093 4.093 23 C -0.130 4.130 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.075 4.075 27 H 0.068 0.932 28 H 0.012 0.988 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.407 0.593 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.130 0.870 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 0.386 21.011 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.169 3.831 3 H 0.022 0.978 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.344 5.344 13 C 0.286 3.714 14 O -0.469 6.469 15 C 0.023 3.977 16 H 0.132 0.868 17 C -0.208 4.208 18 N -0.356 5.356 19 C 0.349 3.651 20 O -0.454 6.454 21 C -0.160 4.160 22 C -0.112 4.112 23 C -0.148 4.148 24 C -0.106 4.106 25 C -0.146 4.146 26 C -0.094 4.094 27 H 0.087 0.913 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.250 0.750 36 H 0.148 0.852 37 H 0.171 0.829 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.377 0.489 20.986 21.669 hybrid contribution 0.071 -0.169 -1.342 1.354 sum 5.448 0.320 19.644 20.388 Atomic orbital electron populations 1.21930 0.98401 0.99515 0.99665 1.18385 0.91008 0.92140 0.81577 0.97752 1.21511 1.32702 1.13666 0.90671 0.90662 1.25777 0.94857 0.95561 1.02280 1.70039 1.36915 1.23870 1.24695 0.85407 0.78699 0.78671 0.77625 1.18987 1.21301 1.19490 1.46215 1.64428 1.14371 1.09374 1.20944 0.77775 0.87204 0.85498 1.90623 1.53026 1.17748 1.85537 1.20789 1.00559 0.92332 0.83992 0.86794 1.22075 0.93155 1.01872 1.03699 1.45715 1.73741 1.11685 1.04501 1.18669 0.75231 0.88138 0.83041 1.90722 1.51673 1.17544 1.85416 1.19893 1.08820 0.93825 0.93506 1.21558 0.97008 0.91849 1.00776 1.21492 0.99944 1.00961 0.92375 1.21827 0.95076 0.96016 0.97668 1.21494 1.00018 0.93380 0.99736 1.21405 0.95761 1.01077 0.91114 0.91316 0.96923 0.94141 0.92531 0.75737 0.89175 0.91835 0.90596 0.74985 0.85219 0.82933 0.82257 0.82624 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 13.74 2.56 44.25 0.11 13.85 16 3 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16 4 C -0.55 -28.22 8.73 25.60 0.22 -28.00 16 5 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 0.82 5.30 84.65 0.45 1.26 16 7 N -0.92 -51.76 11.32 21.45 0.24 -51.51 16 8 Si 0.97 41.26 29.54 68.60 2.03 43.29 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 N -0.70 -27.84 4.96 -446.08 -2.21 -30.05 16 13 C 0.50 19.26 7.19 87.66 0.63 19.89 16 14 O -0.59 -26.94 15.50 -3.01 -0.05 -26.99 16 15 C 0.13 3.98 2.99 44.25 0.13 4.11 16 16 H 0.11 3.41 7.58 -2.39 -0.02 3.39 16 17 C -0.15 -3.74 9.38 71.98 0.68 -3.07 16 18 N -0.70 -20.52 4.90 -448.97 -2.20 -22.72 16 19 C 0.56 16.52 7.74 86.79 0.67 17.20 16 20 O -0.57 -19.74 16.01 -3.88 -0.06 -19.80 16 21 C -0.16 -3.82 5.87 -20.09 -0.12 -3.94 16 22 C -0.09 -1.88 9.54 22.53 0.21 -1.66 16 23 C -0.13 -1.93 10.03 22.23 0.22 -1.71 16 24 C -0.09 -1.08 10.04 22.33 0.22 -0.86 16 25 C -0.13 -1.85 10.03 22.23 0.22 -1.63 16 26 C -0.07 -1.56 9.60 22.53 0.22 -1.34 16 27 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 28 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.41 13.68 7.96 -92.71 -0.74 12.94 16 32 H 0.09 1.99 7.56 -2.39 -0.02 1.97 16 33 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.41 11.64 5.83 -92.71 -0.54 11.10 16 36 H 0.13 2.50 6.41 -2.91 -0.02 2.48 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.13 2.77 7.65 -2.91 -0.02 2.75 16 Total: -1.00 -68.73 341.22 2.08 -66.64 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.21 Total: 33.20 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 4.54 Total: 7.95 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.17 Total: -104.28 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -0.11 Total: -46.79 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -68.73 2.08 -66.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338074257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.126 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds