Wall clock time and date at job start Tue Mar 31 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46792 * 2 1 4 4 C 1.50695 * 109.47191 * 239.99788 * 2 1 3 5 5 H 1.07998 * 120.00630 * 275.00411 * 4 2 1 6 6 C 1.37884 * 119.99520 * 95.00008 * 4 2 1 7 7 N 1.31512 * 119.99753 * 184.91256 * 6 4 2 8 8 Si 1.86800 * 120.00141 * 4.91941 * 6 4 2 9 9 H 1.48496 * 109.46938 * 84.83141 * 8 6 4 10 10 H 1.48497 * 109.46896 * 204.82953 * 8 6 4 11 11 H 1.48493 * 109.47042 * 324.83002 * 8 6 4 12 12 N 1.46499 * 109.46891 * 120.00205 * 2 1 3 13 13 C 1.34787 * 119.99677 * 275.27406 * 12 2 1 14 14 O 1.21272 * 120.00251 * 359.72489 * 13 12 2 15 15 C 1.50701 * 119.99870 * 179.72817 * 13 12 2 16 16 H 1.09006 * 109.47051 * 59.99852 * 15 13 12 17 17 C 1.52999 * 109.46987 * 300.00364 * 15 13 12 18 18 N 1.46494 * 109.47126 * 179.97438 * 15 13 12 19 19 C 1.34777 * 119.99756 * 205.00190 * 18 15 13 20 20 O 1.21553 * 120.00323 * 359.97438 * 19 18 15 21 21 C 1.47850 * 119.99646 * 179.97438 * 19 18 15 22 22 C 1.39577 * 120.14597 * 359.72461 * 21 19 18 23 23 C 1.37951 * 119.85119 * 179.78694 * 22 21 19 24 24 C 1.38358 * 120.14850 * 0.48725 * 23 22 21 25 25 C 1.38365 * 120.28952 * 359.73946 * 24 23 22 26 26 C 1.37956 * 120.14566 * 0.02754 * 25 24 23 27 27 H 1.09001 * 109.46580 * 295.03390 * 1 2 3 28 28 H 1.08997 * 109.46913 * 55.03779 * 1 2 3 29 29 H 1.08998 * 109.46691 * 175.03815 * 1 2 3 30 30 H 0.97001 * 120.00087 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00475 * 95.00028 * 12 2 1 32 32 H 1.09006 * 109.46807 * 299.99638 * 17 15 13 33 33 H 1.08994 * 109.47611 * 59.99617 * 17 15 13 34 34 H 1.09003 * 109.47190 * 180.02562 * 17 15 13 35 35 H 0.96997 * 120.00061 * 24.99565 * 18 15 13 36 36 H 1.07998 * 120.06810 * 359.97438 * 22 21 19 37 37 H 1.08001 * 119.92731 * 180.22554 * 23 22 21 38 38 H 1.08003 * 119.85898 * 179.72046 * 24 23 22 39 39 H 1.08007 * 119.92620 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.07090 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0122 -2.3580 7 7 2.7061 -0.6131 -3.4621 8 14 2.3136 1.8792 -2.3173 9 1 3.5992 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1962 13 6 2.1418 -0.0196 2.3586 14 8 1.8534 1.1571 2.4130 15 6 2.6382 -0.7315 3.5905 16 1 3.6383 -1.1237 3.4054 17 6 1.6924 -1.8857 3.9285 18 7 2.6831 0.2086 4.7131 19 6 3.5258 -0.0100 5.7419 20 8 4.2483 -0.9875 5.7386 21 6 3.5714 0.9392 6.8746 22 6 2.7472 2.0656 6.8788 23 6 2.7916 2.9449 7.9408 24 6 3.6578 2.7176 8.9955 25 6 4.4809 1.6054 8.9953 26 6 4.4430 0.7156 7.9417 27 1 -0.3632 0.4349 0.9312 28 1 -0.3633 0.5889 -0.8422 29 1 -0.3632 -1.0238 -0.0889 30 1 2.9364 -0.1048 -4.2555 31 1 2.2491 -1.6318 1.1526 32 1 0.6924 -1.4935 4.1137 33 1 1.6595 -2.5850 3.0932 34 1 2.0512 -2.4003 4.8199 35 1 2.1063 0.9885 4.7159 36 1 2.0741 2.2467 6.0539 37 1 2.1517 3.8150 7.9471 38 1 3.6919 3.4115 9.8224 39 1 5.1551 1.4339 9.8214 40 1 5.0862 -0.1519 7.9425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338074263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:11 Heat of formation + Delta-G solvation = -55.056825 kcal Electronic energy + Delta-G solvation = -22453.871683 eV Core-core repulsion = 19040.213847 eV Total energy + Delta-G solvation = -3413.657836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.50247 -39.31718 -38.22003 -35.34040 -34.66516 -32.62258 -32.01037 -31.20149 -30.47656 -29.11189 -25.38099 -24.96578 -23.58615 -22.71813 -21.07928 -20.33959 -19.66697 -18.69631 -17.24891 -16.62936 -16.38278 -15.65807 -15.43421 -15.21390 -14.91633 -14.62827 -14.49696 -14.01176 -13.83010 -13.52938 -13.15113 -12.95407 -12.62310 -12.57079 -12.37811 -12.25327 -11.93647 -11.59922 -11.47017 -11.35507 -11.15800 -10.87280 -10.64668 -10.05778 -9.92909 -9.47272 -9.28601 -9.26737 -9.25005 -9.02000 -8.75231 -8.22007 -6.28030 -4.32340 0.61527 1.08702 2.72100 2.94765 3.07675 3.23317 3.30685 3.36663 3.66028 3.89428 4.27963 4.49319 4.56211 4.65522 4.85298 5.00335 5.09010 5.12897 5.16667 5.20792 5.30258 5.52042 5.63068 5.69218 5.80100 6.04473 6.12098 6.12740 6.14975 6.26287 6.32772 6.44700 6.59408 6.60632 6.85045 7.10588 7.28315 7.43676 7.47436 8.01558 8.13218 8.46473 8.70508 8.80260 9.33235 10.83600 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.003350 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.465149 B = 8356.016704 C = 8772.100119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.231 3.769 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.694 5.694 13 C 0.499 3.501 14 O -0.558 6.558 15 C 0.121 3.879 16 H 0.113 0.887 17 C -0.156 4.156 18 N -0.704 5.704 19 C 0.560 3.440 20 O -0.540 6.540 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.128 4.128 24 C -0.097 4.097 25 C -0.131 4.131 26 C -0.060 4.060 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.269 0.731 31 H 0.396 0.604 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 3.625 22.686 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.343 5.343 13 C 0.283 3.717 14 O -0.438 6.438 15 C 0.012 3.988 16 H 0.131 0.869 17 C -0.215 4.215 18 N -0.357 5.357 19 C 0.347 3.653 20 O -0.418 6.418 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.146 4.146 24 C -0.115 4.115 25 C -0.149 4.149 26 C -0.079 4.079 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.237 3.778 22.429 22.746 hybrid contribution -0.133 0.928 -0.250 0.970 sum -0.370 4.705 22.179 22.676 Atomic orbital electron populations 1.22216 0.98411 1.00692 0.99264 1.19175 0.91011 0.94352 0.82604 0.93157 1.20999 1.45453 0.95700 0.94874 0.90197 1.24948 0.93546 0.98662 0.95159 1.69876 1.44453 1.36258 1.01699 0.86887 0.79766 0.85799 0.77414 1.19847 1.21121 1.18513 1.46633 1.64128 1.14088 1.09404 1.20450 0.78729 0.87526 0.84999 1.90627 1.52005 1.15965 1.85213 1.20887 1.02434 0.90029 0.85415 0.86894 1.22101 0.99144 0.97099 1.03162 1.45670 1.42024 1.28349 1.19664 1.18257 0.79582 0.85262 0.82174 1.90764 1.42096 1.29678 1.79272 1.19958 1.00495 0.96717 0.96278 1.21435 0.97337 0.93141 0.98350 1.21136 0.99642 0.99759 0.94054 1.21389 0.94966 0.97026 0.98138 1.21168 1.00001 0.94942 0.98756 1.21304 0.96032 0.98853 0.91749 0.95255 0.92828 0.93296 0.92155 0.77006 0.91893 0.90542 0.91177 0.75328 0.85263 0.85315 0.85620 0.85334 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.46 37.16 0.35 -2.75 16 2 C 0.23 5.32 2.22 -69.08 -0.15 5.16 16 3 H 0.05 1.27 4.73 -51.93 -0.25 1.03 16 4 C -0.53 -14.00 9.05 -34.44 -0.31 -14.31 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.82 13.96 55.43 0.77 -25.05 16 8 Si 0.87 21.27 26.99 -169.99 -4.59 16.68 16 9 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -6.20 6.82 56.52 0.39 -5.82 16 12 N -0.69 -13.35 4.96 -54.93 -0.27 -13.63 16 13 C 0.50 9.10 7.18 -10.98 -0.08 9.02 16 14 O -0.56 -11.78 15.50 5.56 0.09 -11.69 16 15 C 0.12 1.78 2.98 -69.09 -0.21 1.57 16 16 H 0.11 1.71 7.58 -51.93 -0.39 1.31 16 17 C -0.16 -1.91 9.38 37.16 0.35 -1.56 16 18 N -0.70 -9.81 4.90 -55.88 -0.27 -10.08 16 19 C 0.56 8.00 7.74 -12.33 -0.10 7.90 16 20 O -0.54 -9.10 16.01 5.32 0.09 -9.01 16 21 C -0.13 -1.56 5.87 -104.96 -0.62 -2.18 16 22 C -0.08 -0.84 9.54 -39.19 -0.37 -1.22 16 23 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 24 C -0.10 -0.74 10.04 -39.49 -0.40 -1.13 16 25 C -0.13 -1.08 10.03 -39.64 -0.40 -1.48 16 26 C -0.06 -0.64 9.60 -39.19 -0.38 -1.02 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.40 6.71 8.01 -40.82 -0.33 6.38 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.85 7.56 -51.93 -0.39 0.45 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.41 5.37 5.82 -40.82 -0.24 5.13 16 36 H 0.13 1.18 6.41 -52.49 -0.34 0.84 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -32.27 340.97 -7.14 -39.41 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.29 Total: 9.52 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.80 Total: -1.29 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.23 Total: -48.76 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.59 Total: 16.68 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.27 -7.14 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338074263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.644 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds