Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46792 * 2 1 4 4 C 1.50695 * 109.47191 * 239.99788 * 2 1 3 5 5 H 1.07998 * 120.00630 * 275.00411 * 4 2 1 6 6 C 1.37884 * 119.99520 * 95.00008 * 4 2 1 7 7 N 1.31512 * 119.99753 * 184.91256 * 6 4 2 8 8 Si 1.86800 * 120.00141 * 4.91941 * 6 4 2 9 9 H 1.48496 * 109.46938 * 84.83141 * 8 6 4 10 10 H 1.48497 * 109.46896 * 204.82953 * 8 6 4 11 11 H 1.48493 * 109.47042 * 324.83002 * 8 6 4 12 12 N 1.46499 * 109.46891 * 120.00205 * 2 1 3 13 13 C 1.34787 * 119.99677 * 275.27406 * 12 2 1 14 14 O 1.21272 * 120.00251 * 359.72489 * 13 12 2 15 15 C 1.50701 * 119.99870 * 179.72817 * 13 12 2 16 16 H 1.09006 * 109.47051 * 59.99852 * 15 13 12 17 17 C 1.52999 * 109.46987 * 300.00364 * 15 13 12 18 18 N 1.46494 * 109.47126 * 179.97438 * 15 13 12 19 19 C 1.34777 * 119.99756 * 205.00190 * 18 15 13 20 20 O 1.21553 * 120.00323 * 359.97438 * 19 18 15 21 21 C 1.47850 * 119.99646 * 179.97438 * 19 18 15 22 22 C 1.39577 * 120.14597 * 359.72461 * 21 19 18 23 23 C 1.37951 * 119.85119 * 179.78694 * 22 21 19 24 24 C 1.38358 * 120.14850 * 0.48725 * 23 22 21 25 25 C 1.38365 * 120.28952 * 359.73946 * 24 23 22 26 26 C 1.37956 * 120.14566 * 0.02754 * 25 24 23 27 27 H 1.09001 * 109.46580 * 295.03390 * 1 2 3 28 28 H 1.08997 * 109.46913 * 55.03779 * 1 2 3 29 29 H 1.08998 * 109.46691 * 175.03815 * 1 2 3 30 30 H 0.97001 * 120.00087 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00475 * 95.00028 * 12 2 1 32 32 H 1.09006 * 109.46807 * 299.99638 * 17 15 13 33 33 H 1.08994 * 109.47611 * 59.99617 * 17 15 13 34 34 H 1.09003 * 109.47190 * 180.02562 * 17 15 13 35 35 H 0.96997 * 120.00061 * 24.99565 * 18 15 13 36 36 H 1.07998 * 120.06810 * 359.97438 * 22 21 19 37 37 H 1.08001 * 119.92731 * 180.22554 * 23 22 21 38 38 H 1.08003 * 119.85898 * 179.72046 * 24 23 22 39 39 H 1.08007 * 119.92620 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.07090 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0122 -2.3580 7 7 2.7061 -0.6131 -3.4621 8 14 2.3136 1.8792 -2.3173 9 1 3.5992 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1962 13 6 2.1418 -0.0196 2.3586 14 8 1.8534 1.1571 2.4130 15 6 2.6382 -0.7315 3.5905 16 1 3.6383 -1.1237 3.4054 17 6 1.6924 -1.8857 3.9285 18 7 2.6831 0.2086 4.7131 19 6 3.5258 -0.0100 5.7419 20 8 4.2483 -0.9875 5.7386 21 6 3.5714 0.9392 6.8746 22 6 2.7472 2.0656 6.8788 23 6 2.7916 2.9449 7.9408 24 6 3.6578 2.7176 8.9955 25 6 4.4809 1.6054 8.9953 26 6 4.4430 0.7156 7.9417 27 1 -0.3632 0.4349 0.9312 28 1 -0.3633 0.5889 -0.8422 29 1 -0.3632 -1.0238 -0.0889 30 1 2.9364 -0.1048 -4.2555 31 1 2.2491 -1.6318 1.1526 32 1 0.6924 -1.4935 4.1137 33 1 1.6595 -2.5850 3.0932 34 1 2.0512 -2.4003 4.8199 35 1 2.1063 0.9885 4.7159 36 1 2.0741 2.2467 6.0539 37 1 2.1517 3.8150 7.9471 38 1 3.6919 3.4115 9.8224 39 1 5.1551 1.4339 9.8214 40 1 5.0862 -0.1519 7.9425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338074263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -77.280348 kcal Electronic energy + Delta-G solvation = -22454.835367 eV Core-core repulsion = 19040.213847 eV Total energy + Delta-G solvation = -3414.621520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63384 -40.58565 -39.18675 -36.94130 -36.05198 -34.47757 -33.15117 -31.91547 -31.73707 -30.43684 -27.34000 -26.05772 -24.63231 -23.46909 -22.56666 -21.47084 -21.23989 -19.90412 -18.87572 -17.89085 -17.58735 -16.96251 -16.74095 -16.40583 -16.18463 -15.76073 -15.54630 -15.46791 -14.81109 -14.65764 -14.49415 -14.37556 -14.26768 -13.92265 -13.53693 -13.32592 -13.18244 -13.05264 -12.80006 -12.69514 -12.58081 -12.44952 -12.02872 -11.88701 -11.25904 -11.15888 -10.92571 -10.82309 -10.35715 -9.96294 -9.92532 -9.88361 -8.40150 -6.46770 -0.16586 0.40696 1.28492 1.33553 1.42952 1.57750 1.73722 1.85173 2.25732 2.46395 2.88905 3.01290 3.55378 3.73694 3.90038 4.00897 4.01669 4.09472 4.24413 4.43975 4.46338 4.51848 4.63726 4.72574 4.75092 4.82103 4.85472 5.05367 5.07231 5.13401 5.20825 5.33998 5.36207 5.44165 5.45241 5.49937 5.67277 5.94303 6.08464 6.37215 6.58604 6.76866 7.03825 7.17070 7.30798 8.74824 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.003350 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.465149 B = 8356.016704 C = 8772.100119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.234 3.766 3 H 0.032 0.968 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.930 5.930 8 Si 0.927 3.073 9 H -0.277 1.277 10 H -0.278 1.278 11 H -0.252 1.252 12 N -0.694 5.694 13 C 0.503 3.497 14 O -0.584 6.584 15 C 0.129 3.871 16 H 0.109 0.891 17 C -0.149 4.149 18 N -0.702 5.702 19 C 0.559 3.441 20 O -0.574 6.574 21 C -0.157 4.157 22 C -0.092 4.092 23 C -0.130 4.130 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.076 4.076 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.271 0.729 31 H 0.407 0.593 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 5.106 25.143 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.131 3.869 3 H 0.050 0.950 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.752 3.248 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.176 1.176 12 N -0.343 5.343 13 C 0.289 3.711 14 O -0.466 6.466 15 C 0.020 3.980 16 H 0.127 0.873 17 C -0.207 4.207 18 N -0.355 5.355 19 C 0.348 3.652 20 O -0.454 6.454 21 C -0.160 4.160 22 C -0.110 4.110 23 C -0.147 4.147 24 C -0.106 4.106 25 C -0.147 4.147 26 C -0.095 4.095 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.243 0.757 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.920 5.252 24.908 25.472 hybrid contribution 0.094 0.460 -0.901 1.016 sum -0.826 5.712 24.007 24.691 Atomic orbital electron populations 1.22101 0.96627 1.01467 0.99711 1.18940 0.92275 0.93090 0.82645 0.95032 1.21207 1.44415 0.94912 0.96087 0.92386 1.25630 0.93735 1.02480 0.95005 1.69978 1.46525 1.37817 1.02498 0.86048 0.79678 0.81320 0.77762 1.20240 1.20326 1.17607 1.46345 1.64457 1.14635 1.08857 1.20906 0.77718 0.87124 0.85400 1.90611 1.53030 1.17244 1.85700 1.20794 1.02614 0.90438 0.84111 0.87293 1.22070 0.98668 0.96200 1.03791 1.45678 1.42126 1.28398 1.19334 1.18688 0.78713 0.85218 0.82564 1.90734 1.43417 1.31215 1.80075 1.19890 1.02566 0.97412 0.96133 1.21563 0.97178 0.92984 0.99322 1.21493 0.99865 0.99944 0.93423 1.21829 0.93453 0.96820 0.98537 1.21490 1.00272 0.94435 0.98511 1.21403 0.96122 0.99493 0.92480 0.93971 0.93349 0.92218 0.92007 0.75668 0.91230 0.89253 0.90860 0.74828 0.84934 0.82820 0.82302 0.82760 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 9.46 71.98 0.68 -5.01 16 2 C 0.23 10.62 2.22 44.25 0.10 10.71 16 3 H 0.03 1.57 4.73 -2.39 -0.01 1.56 16 4 C -0.53 -27.90 9.05 25.60 0.23 -27.67 16 5 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 6 C 0.03 1.78 5.47 84.66 0.46 2.24 16 7 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 8 Si 0.93 43.84 26.99 68.60 1.85 45.69 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.25 -11.47 6.82 99.48 0.68 -10.79 16 12 N -0.69 -26.11 4.96 -446.09 -2.21 -28.33 16 13 C 0.50 17.90 7.18 87.66 0.63 18.53 16 14 O -0.58 -24.13 15.50 -3.01 -0.05 -24.18 16 15 C 0.13 3.71 2.98 44.25 0.13 3.84 16 16 H 0.11 3.27 7.58 -2.38 -0.02 3.25 16 17 C -0.15 -3.43 9.38 71.98 0.68 -2.75 16 18 N -0.70 -19.31 4.90 -448.98 -2.20 -21.51 16 19 C 0.56 16.04 7.74 86.79 0.67 16.71 16 20 O -0.57 -19.68 16.01 -3.88 -0.06 -19.75 16 21 C -0.16 -3.67 5.87 -20.09 -0.12 -3.79 16 22 C -0.09 -1.72 9.54 22.53 0.21 -1.51 16 23 C -0.13 -1.78 10.03 22.23 0.22 -1.55 16 24 C -0.09 -1.03 10.04 22.33 0.22 -0.81 16 25 C -0.13 -1.82 10.03 22.23 0.22 -1.60 16 26 C -0.08 -1.56 9.60 22.53 0.22 -1.35 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.41 13.49 8.01 -92.71 -0.74 12.75 16 32 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 1.82 7.56 -2.39 -0.02 1.80 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.41 10.62 5.82 -92.71 -0.54 10.08 16 36 H 0.13 2.28 6.41 -2.91 -0.02 2.26 16 37 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.13 2.74 7.65 -2.91 -0.02 2.71 16 Total: -1.00 -69.67 340.97 1.95 -67.72 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.24 Total: 29.01 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 4.57 Total: 6.00 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.12 Total: -104.48 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.11 Total: -43.93 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.85 Total: 45.69 kcal Total: -69.67 1.95 -67.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338074263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.564 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds