Wall clock time and date at job start Tue Mar 31 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50701 * 120.00387 * 2 1 4 4 O 1.42894 * 109.47413 * 134.72810 * 3 2 1 5 5 C 1.35898 * 117.00292 * 180.02562 * 4 3 2 6 6 C 1.38808 * 120.01873 * 359.72694 * 5 4 3 7 7 C 1.38166 * 120.08232 * 179.70228 * 6 5 4 8 8 C 1.38166 * 120.12371 * 0.59229 * 7 6 5 9 9 C 1.38884 * 120.04188 * 359.68295 * 8 7 6 10 10 N 1.39935 * 120.04349 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00000 * 213.27575 * 10 9 8 12 12 O 1.21591 * 119.99687 * 5.31194 * 11 10 9 13 13 N 1.34774 * 120.00191 * 185.31535 * 11 10 9 14 14 C 1.46502 * 119.99988 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47060 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47449 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99512 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00305 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99874 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47010 * 89.99955 * 20 18 16 22 22 H 1.48497 * 109.47068 * 209.99666 * 20 18 16 23 23 H 1.48499 * 109.47171 * 329.99685 * 20 18 16 24 24 C 1.38587 * 120.02090 * 179.97438 * 5 4 3 25 25 H 1.08006 * 119.99782 * 0.27119 * 1 2 3 26 26 H 1.08003 * 120.00400 * 180.27839 * 1 2 3 27 27 H 1.08006 * 119.99782 * 179.72881 * 2 1 3 28 28 H 1.09001 * 109.46965 * 254.73122 * 3 2 1 29 29 H 1.08998 * 109.46951 * 14.72567 * 3 2 1 30 30 H 1.08000 * 119.95803 * 359.96945 * 6 5 4 31 31 H 1.08002 * 119.93829 * 180.27691 * 7 6 5 32 32 H 1.08003 * 119.98308 * 179.70538 * 8 7 6 33 33 H 0.97005 * 120.00164 * 33.27336 * 10 9 8 34 34 H 0.97000 * 119.99994 * 0.02562 * 13 11 10 35 35 H 1.08995 * 109.47649 * 299.99838 * 14 13 11 36 36 H 1.08998 * 109.46943 * 60.00185 * 14 13 11 37 37 H 1.09003 * 109.47391 * 300.00801 * 15 14 13 38 38 H 1.09007 * 109.47082 * 60.00255 * 15 14 13 39 39 H 0.96998 * 119.99542 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.05973 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1228 1.2435 0.9571 5 6 3.9047 2.3478 1.0840 6 6 3.6602 3.4658 0.2985 7 6 4.4504 4.5914 0.4307 8 6 5.4939 4.6035 1.3363 9 6 5.7467 3.4857 2.1208 10 7 6.8032 3.4982 3.0384 11 6 7.4852 2.3647 3.2962 12 8 7.2473 1.3546 2.6625 13 7 8.4308 2.3507 4.2565 14 6 9.1717 1.1184 4.5371 15 6 10.1775 1.3730 5.6617 16 6 10.9401 0.1056 5.9500 17 1 10.7288 -0.7917 5.3871 18 6 11.9082 0.0917 6.9316 19 7 12.5741 -1.0144 7.1828 20 14 12.2741 1.6437 7.9046 21 1 11.4062 1.6890 9.1088 22 1 13.6993 1.6421 8.3215 23 1 12.0075 2.8336 7.0572 24 6 4.9498 2.3565 1.9941 25 1 -0.5400 0.9354 -0.0044 26 1 -0.5401 -0.9353 0.0045 27 1 1.8499 -0.9354 0.0044 28 1 2.4796 1.4843 -0.9914 29 1 1.3845 2.1167 0.2612 30 1 2.8485 3.4573 -0.4139 31 1 4.2553 5.4615 -0.1785 32 1 6.1132 5.4829 1.4344 33 1 7.0447 4.3226 3.4888 34 1 8.6202 3.1564 4.7623 35 1 8.4754 0.3372 4.8419 36 1 9.7031 0.8017 3.6397 37 1 10.8737 2.1542 5.3565 38 1 9.6464 1.6900 6.5593 39 1 13.2549 -1.0242 7.8736 40 1 5.1437 1.4863 2.6035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345042052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:54 Heat of formation + Delta-G solvation = -20.046347 kcal Electronic energy + Delta-G solvation = -21552.011223 eV Core-core repulsion = 18139.871555 eV Total energy + Delta-G solvation = -3412.139668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71742 -39.70421 -37.73114 -35.20440 -34.62124 -34.14393 -32.81678 -30.69074 -30.19455 -28.95103 -26.81617 -24.98747 -23.11638 -22.18722 -20.85596 -20.78547 -20.18366 -18.70840 -18.12816 -16.90118 -16.60988 -16.21607 -16.15198 -15.84528 -15.33640 -14.76628 -14.44669 -14.16072 -13.94828 -13.83761 -13.59229 -13.28583 -13.12810 -12.73162 -12.61469 -11.98971 -11.69841 -11.62093 -11.50532 -11.24271 -11.12777 -10.46034 -10.29585 -10.25915 -9.98662 -9.89108 -9.79949 -9.34230 -8.70835 -8.60604 -8.41378 -8.07712 -6.11697 -4.11982 1.20900 1.35295 1.68796 2.69687 3.18657 3.24441 3.28445 3.31881 3.33071 3.78043 4.36711 4.36868 4.47696 4.64500 4.71552 4.86370 4.96833 5.03713 5.07145 5.21025 5.22998 5.44033 5.45762 5.71976 5.99702 6.12345 6.13923 6.16223 6.20284 6.21803 6.30756 6.35565 6.54466 6.69679 6.82930 6.95378 7.19566 7.22117 7.32046 7.65405 8.10915 8.43597 8.71439 8.92895 9.48076 11.01303 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.002615 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.800326 B =10706.912662 C =11663.863506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.087 3.913 4 O -0.308 6.308 5 C 0.149 3.851 6 C -0.234 4.234 7 C -0.061 4.061 8 C -0.190 4.190 9 C 0.216 3.784 10 N -0.691 5.691 11 C 0.696 3.304 12 O -0.571 6.571 13 N -0.735 5.735 14 C 0.146 3.854 15 C -0.022 4.022 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.267 1.267 24 C -0.155 4.155 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.407 0.593 34 H 0.394 0.606 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.265 0.735 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.798 13.198 -13.661 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.012 3.988 4 O -0.222 6.222 5 C 0.103 3.897 6 C -0.253 4.253 7 C -0.079 4.079 8 C -0.211 4.211 9 C 0.119 3.881 10 N -0.339 5.339 11 C 0.396 3.604 12 O -0.447 6.447 13 N -0.388 5.388 14 C 0.024 3.976 15 C -0.059 4.059 16 C -0.561 4.561 17 H 0.095 0.905 18 C -0.133 4.133 19 N -0.536 5.536 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.177 4.177 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.139 0.861 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.243 0.757 34 H 0.227 0.773 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.761 11.920 -13.942 28.461 hybrid contribution 0.504 1.650 0.888 1.941 sum -21.258 13.570 -13.053 28.398 Atomic orbital electron populations 1.23867 0.95387 1.02510 0.99351 1.22717 0.95679 0.98000 1.00796 1.21812 0.87996 0.96731 0.92239 1.86121 1.42235 1.35739 1.58072 1.18711 0.90717 0.85711 0.94574 1.21135 1.04861 0.94639 1.04695 1.20623 0.93622 0.97203 0.96499 1.20754 1.01942 0.99036 0.99343 1.17121 0.86747 0.94222 0.89973 1.42745 1.33825 1.12167 1.45137 1.16050 0.79802 0.83206 0.81303 1.90957 1.69305 1.32343 1.52124 1.45568 1.39550 1.16040 1.37669 1.21463 0.93401 0.83260 0.99471 1.19805 0.94135 0.98830 0.93180 1.20902 1.19084 0.96082 1.20035 0.90539 1.25005 0.95500 0.96129 0.96690 1.69907 1.24356 1.26827 1.32500 0.86742 0.77627 0.84057 0.80564 1.20230 1.21275 1.19131 1.20381 0.94407 1.00555 1.02311 0.88312 0.87431 0.86083 0.90998 0.91513 0.85723 0.85538 0.85635 0.75729 0.77312 0.91838 0.91857 0.95971 0.96385 0.92533 0.83592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 14.31 29.02 0.42 -0.68 16 2 C -0.15 -1.25 9.89 -36.02 -0.36 -1.60 16 3 C 0.09 0.77 5.15 36.01 0.19 0.96 16 4 O -0.31 -4.00 10.12 -19.42 -0.20 -4.20 16 5 C 0.15 1.96 6.68 -39.24 -0.26 1.70 16 6 C -0.23 -2.42 9.04 -39.40 -0.36 -2.78 16 7 C -0.06 -0.57 10.03 -39.63 -0.40 -0.97 16 8 C -0.19 -1.98 9.96 -39.37 -0.39 -2.37 16 9 C 0.22 2.85 6.28 -83.71 -0.53 2.33 16 10 N -0.69 -8.76 5.35 -14.24 -0.08 -8.83 16 11 C 0.70 11.70 8.30 -86.92 -0.72 10.98 16 12 O -0.57 -11.95 14.03 5.29 0.07 -11.87 16 13 N -0.73 -11.93 5.56 -65.23 -0.36 -12.30 16 14 C 0.15 2.97 5.61 -4.04 -0.02 2.95 16 15 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 16 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 17 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 20 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 24 C -0.16 -2.34 8.59 -39.25 -0.34 -2.68 16 25 H 0.10 0.51 7.90 -52.48 -0.41 0.09 16 26 H 0.11 0.55 8.06 -52.48 -0.42 0.13 16 27 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 28 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 29 H 0.07 0.48 7.39 -51.93 -0.38 0.10 16 30 H 0.12 0.97 6.29 -52.49 -0.33 0.64 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.41 3.60 8.83 -40.82 -0.36 3.24 16 34 H 0.39 5.12 8.49 -40.82 -0.35 4.78 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 38 H 0.02 0.39 7.57 -51.92 -0.39 0.00 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.15 2.58 6.41 -52.49 -0.34 2.24 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -34.05 342.92 -8.06 -42.11 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.46 Total: 5.99 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.32 Total: -5.82 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.33 Total: -47.63 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.12 Total: -16.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.05 -8.06 -42.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345042052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.066 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds