Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50701 * 120.00387 * 2 1 4 4 O 1.42894 * 109.47413 * 134.72810 * 3 2 1 5 5 C 1.35898 * 117.00292 * 180.02562 * 4 3 2 6 6 C 1.38808 * 120.01873 * 359.72694 * 5 4 3 7 7 C 1.38166 * 120.08232 * 179.70228 * 6 5 4 8 8 C 1.38166 * 120.12371 * 0.59229 * 7 6 5 9 9 C 1.38884 * 120.04188 * 359.68295 * 8 7 6 10 10 N 1.39935 * 120.04349 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00000 * 213.27575 * 10 9 8 12 12 O 1.21591 * 119.99687 * 5.31194 * 11 10 9 13 13 N 1.34774 * 120.00191 * 185.31535 * 11 10 9 14 14 C 1.46502 * 119.99988 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47060 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47449 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99512 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00305 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99874 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47010 * 89.99955 * 20 18 16 22 22 H 1.48497 * 109.47068 * 209.99666 * 20 18 16 23 23 H 1.48499 * 109.47171 * 329.99685 * 20 18 16 24 24 C 1.38587 * 120.02090 * 179.97438 * 5 4 3 25 25 H 1.08006 * 119.99782 * 0.27119 * 1 2 3 26 26 H 1.08003 * 120.00400 * 180.27839 * 1 2 3 27 27 H 1.08006 * 119.99782 * 179.72881 * 2 1 3 28 28 H 1.09001 * 109.46965 * 254.73122 * 3 2 1 29 29 H 1.08998 * 109.46951 * 14.72567 * 3 2 1 30 30 H 1.08000 * 119.95803 * 359.96945 * 6 5 4 31 31 H 1.08002 * 119.93829 * 180.27691 * 7 6 5 32 32 H 1.08003 * 119.98308 * 179.70538 * 8 7 6 33 33 H 0.97005 * 120.00164 * 33.27336 * 10 9 8 34 34 H 0.97000 * 119.99994 * 0.02562 * 13 11 10 35 35 H 1.08995 * 109.47649 * 299.99838 * 14 13 11 36 36 H 1.08998 * 109.46943 * 60.00185 * 14 13 11 37 37 H 1.09003 * 109.47391 * 300.00801 * 15 14 13 38 38 H 1.09007 * 109.47082 * 60.00255 * 15 14 13 39 39 H 0.96998 * 119.99542 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.05973 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1228 1.2435 0.9571 5 6 3.9047 2.3478 1.0840 6 6 3.6602 3.4658 0.2985 7 6 4.4504 4.5914 0.4307 8 6 5.4939 4.6035 1.3363 9 6 5.7467 3.4857 2.1208 10 7 6.8032 3.4982 3.0384 11 6 7.4852 2.3647 3.2962 12 8 7.2473 1.3546 2.6625 13 7 8.4308 2.3507 4.2565 14 6 9.1717 1.1184 4.5371 15 6 10.1775 1.3730 5.6617 16 6 10.9401 0.1056 5.9500 17 1 10.7288 -0.7917 5.3871 18 6 11.9082 0.0917 6.9316 19 7 12.5741 -1.0144 7.1828 20 14 12.2741 1.6437 7.9046 21 1 11.4062 1.6890 9.1088 22 1 13.6993 1.6421 8.3215 23 1 12.0075 2.8336 7.0572 24 6 4.9498 2.3565 1.9941 25 1 -0.5400 0.9354 -0.0044 26 1 -0.5401 -0.9353 0.0045 27 1 1.8499 -0.9354 0.0044 28 1 2.4796 1.4843 -0.9914 29 1 1.3845 2.1167 0.2612 30 1 2.8485 3.4573 -0.4139 31 1 4.2553 5.4615 -0.1785 32 1 6.1132 5.4829 1.4344 33 1 7.0447 4.3226 3.4888 34 1 8.6202 3.1564 4.7623 35 1 8.4754 0.3372 4.8419 36 1 9.7031 0.8017 3.6397 37 1 10.8737 2.1542 5.3565 38 1 9.6464 1.6900 6.5593 39 1 13.2549 -1.0242 7.8736 40 1 5.1437 1.4863 2.6035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345042052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = -44.384989 kcal Electronic energy + Delta-G solvation = -21553.066625 eV Core-core repulsion = 18139.871555 eV Total energy + Delta-G solvation = -3413.195071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80885 -40.75168 -38.70882 -36.73342 -35.69419 -34.93242 -34.77073 -32.21010 -31.27936 -30.04962 -27.51623 -26.77401 -24.17599 -23.17764 -22.58917 -21.97579 -20.86238 -19.77860 -19.31783 -18.92353 -17.42598 -17.26860 -17.00934 -16.83276 -16.56124 -16.28733 -15.78940 -15.55504 -15.33636 -15.05662 -14.61331 -14.45946 -14.35894 -13.87285 -13.56441 -13.35866 -13.07102 -12.73354 -12.52906 -12.35575 -12.18810 -12.17015 -11.88203 -11.75910 -11.53542 -11.35942 -11.15329 -10.78766 -10.46221 -10.15416 -9.39557 -8.99893 -8.29767 -6.37369 0.28982 0.47959 1.10689 1.39547 1.42500 1.52798 1.53956 1.99626 2.37255 2.40875 2.85019 3.05196 3.22601 3.81380 3.97043 4.03931 4.16100 4.26792 4.28804 4.31605 4.39712 4.42343 4.53608 4.57928 4.72422 4.75327 4.94787 5.09372 5.27942 5.33045 5.33737 5.40257 5.42071 5.49480 5.59678 5.63102 5.64535 5.90426 5.95792 6.22697 6.48084 6.69847 6.98206 7.26869 7.43723 8.87089 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024136 B = 0.002615 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.800326 B =10706.912662 C =11663.863506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.185 4.185 3 C 0.083 3.917 4 O -0.339 6.339 5 C 0.132 3.868 6 C -0.226 4.226 7 C -0.052 4.052 8 C -0.180 4.180 9 C 0.194 3.806 10 N -0.670 5.670 11 C 0.695 3.305 12 O -0.619 6.619 13 N -0.722 5.722 14 C 0.163 3.837 15 C -0.011 4.011 16 C -0.540 4.540 17 H 0.028 0.972 18 C 0.002 3.998 19 N -0.951 5.951 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.234 1.234 24 C -0.192 4.192 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.428 0.572 34 H 0.414 0.586 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.268 0.732 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.335 17.901 -14.323 32.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.203 4.203 3 C 0.009 3.991 4 O -0.253 6.253 5 C 0.086 3.914 6 C -0.246 4.246 7 C -0.070 4.070 8 C -0.201 4.201 9 C 0.098 3.902 10 N -0.319 5.319 11 C 0.396 3.604 12 O -0.498 6.498 13 N -0.377 5.377 14 C 0.039 3.961 15 C -0.049 4.049 16 C -0.578 4.578 17 H 0.046 0.954 18 C -0.195 4.195 19 N -0.591 5.591 20 Si 0.783 3.217 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.157 1.157 24 C -0.213 4.213 25 H 0.134 0.866 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.172 0.828 31 H 0.187 0.813 32 H 0.176 0.824 33 H 0.267 0.733 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.337 16.696 -14.613 32.201 hybrid contribution 0.838 0.089 0.977 1.291 sum -22.499 16.786 -13.635 31.207 Atomic orbital electron populations 1.24114 0.94660 1.03922 0.96344 1.22720 0.96474 0.97463 1.03616 1.22065 0.87428 0.97708 0.91939 1.86089 1.43333 1.36425 1.59472 1.18886 0.90629 0.86859 0.95023 1.21501 1.05448 0.93661 1.03953 1.21165 0.92152 0.97926 0.95774 1.21123 1.02243 0.98644 0.98053 1.17369 0.86768 0.94876 0.91151 1.42408 1.32994 1.11567 1.44981 1.16169 0.79767 0.83659 0.80830 1.90940 1.70569 1.34554 1.53765 1.45110 1.39169 1.15449 1.38007 1.20942 0.92705 0.84518 0.97961 1.19649 0.94308 0.96479 0.94462 1.21243 1.20080 0.96830 1.19661 0.95404 1.26115 0.95032 1.00372 0.97973 1.70085 1.25419 1.29919 1.33679 0.85506 0.77351 0.79678 0.79126 1.19041 1.21315 1.15725 1.20296 0.96887 1.00327 1.03837 0.86575 0.86262 0.87432 0.89984 0.89575 0.82847 0.81343 0.82410 0.73259 0.74918 0.93989 0.93821 0.94162 0.94447 0.92329 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 14.31 67.79 0.97 -0.74 16 2 C -0.18 -2.99 9.89 25.66 0.25 -2.74 16 3 C 0.08 1.41 5.15 71.24 0.37 1.78 16 4 O -0.34 -9.20 10.12 -92.41 -0.93 -10.14 16 5 C 0.13 3.52 6.68 22.49 0.15 3.67 16 6 C -0.23 -4.11 9.04 22.39 0.20 -3.91 16 7 C -0.05 -0.76 10.03 22.24 0.22 -0.54 16 8 C -0.18 -3.14 9.96 22.41 0.22 -2.92 16 9 C 0.19 4.98 6.28 38.13 0.24 5.22 16 10 N -0.67 -16.28 5.35 -317.23 -1.70 -17.98 16 11 C 0.70 23.65 8.30 179.06 1.49 25.14 16 12 O -0.62 -27.43 14.03 -4.00 -0.06 -27.48 16 13 N -0.72 -22.98 5.56 -478.54 -2.66 -25.64 16 14 C 0.16 6.78 5.61 86.38 0.48 7.26 16 15 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 16 C -0.54 -31.01 9.66 25.60 0.25 -30.77 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.12 5.47 84.65 0.46 0.58 16 19 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 20 Si 0.96 42.19 27.47 68.60 1.88 44.07 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.23 -9.02 6.54 99.48 0.65 -8.37 16 24 C -0.19 -6.09 8.59 22.49 0.19 -5.90 16 25 H 0.12 0.88 7.90 -2.91 -0.02 0.86 16 26 H 0.12 1.03 8.06 -2.91 -0.02 1.00 16 27 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.08 1.17 7.65 -2.39 -0.02 1.15 16 29 H 0.09 1.08 7.39 -2.39 -0.02 1.06 16 30 H 0.15 1.82 6.29 -2.91 -0.02 1.80 16 31 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.43 6.44 8.83 -92.70 -0.82 5.62 16 34 H 0.41 9.72 8.49 -92.71 -0.79 8.94 16 35 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 38 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.10 4.11 6.41 -2.91 -0.02 4.09 16 Total: -1.00 -80.49 342.92 1.86 -78.63 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.60 Total: 22.14 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.63 Total: -4.22 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.06 Total: -103.00 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.99 Total: -37.62 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.07 kcal Total: -80.49 1.86 -78.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345042052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.244 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds