Wall clock time and date at job start Tue Mar 31 2020 06:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 119.99378 * 2 1 4 4 N 1.34769 * 120.00168 * 179.97438 * 2 1 3 5 5 C 1.39928 * 120.00007 * 184.48687 * 4 2 1 6 6 C 1.38901 * 120.07183 * 325.30581 * 5 4 2 7 7 C 1.38087 * 119.92865 * 180.31895 * 6 5 4 8 8 C 1.38308 * 120.07321 * 359.67562 * 7 6 5 9 9 C 1.38260 * 120.13855 * 0.02562 * 8 7 6 10 10 C 1.38140 * 120.07115 * 0.04111 * 9 8 7 11 11 C 1.50699 * 120.03517 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47279 * 265.00534 * 11 10 9 13 13 O 1.21275 * 120.00206 * 359.72018 * 12 11 10 14 14 N 1.34778 * 119.99739 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99663 * 179.72198 * 14 12 11 16 16 H 1.09003 * 109.47143 * 35.00342 * 15 14 12 17 17 C 1.52997 * 109.47442 * 274.99726 * 15 14 12 18 18 C 1.50703 * 109.47019 * 154.99979 * 15 14 12 19 19 H 1.08003 * 120.00023 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00237 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00024 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00204 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47402 * 59.99958 * 22 20 18 24 24 H 1.48507 * 109.47462 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47069 * 299.99942 * 22 20 18 26 26 H 1.09007 * 109.46956 * 270.00049 * 1 2 3 27 27 H 1.08997 * 109.47653 * 29.99848 * 1 2 3 28 28 H 1.09003 * 109.46824 * 150.00185 * 1 2 3 29 29 H 0.96996 * 120.00432 * 4.49236 * 4 2 1 30 30 H 1.07994 * 120.03258 * 359.97438 * 6 5 4 31 31 H 1.07995 * 119.96561 * 179.69989 * 7 6 5 32 32 H 1.07994 * 119.93420 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.96525 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.46925 * 145.00283 * 11 10 9 35 35 H 1.09002 * 109.47016 * 25.00455 * 11 10 9 36 36 H 0.96992 * 120.00431 * 359.71892 * 14 12 11 37 37 H 1.09003 * 109.47455 * 300.00425 * 17 15 14 38 38 H 1.09000 * 109.46978 * 59.99808 * 17 15 14 39 39 H 1.08996 * 109.47209 * 180.02562 * 17 15 14 40 40 H 0.97007 * 120.00188 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5769 -1.1689 0.0953 6 6 4.3163 -0.1557 -0.5014 7 6 5.6943 -0.1640 -0.4116 8 6 6.3379 -1.1759 0.2773 9 6 5.6044 -2.1825 0.8776 10 6 4.2258 -2.1808 0.7903 11 6 3.4272 -3.2786 1.4445 12 6 3.1306 -4.3553 0.4327 13 8 3.5242 -4.2401 -0.7086 14 7 2.4227 -5.4436 0.7947 15 6 2.1292 -6.4875 -0.1904 16 1 2.9695 -6.5849 -0.8779 17 6 0.8703 -6.1102 -0.9737 18 6 1.9056 -7.7985 0.5184 19 1 1.9756 -7.8492 1.5950 20 6 1.6128 -8.9335 -0.2075 21 7 1.5281 -8.8720 -1.5185 22 14 1.3350 -10.5584 0.6711 23 1 0.1896 -10.4257 1.6070 24 1 1.0388 -11.6169 -0.3275 25 1 2.5564 -10.9246 1.4324 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6982 -2.0059 -0.0649 30 1 3.8144 0.6345 -1.0397 31 1 6.2700 0.6208 -0.8795 32 1 7.4156 -1.1799 0.3464 33 1 6.1099 -2.9711 1.4152 34 1 2.4911 -2.8697 1.8249 35 1 4.0001 -3.7027 2.2691 36 1 2.1076 -5.5357 1.7074 37 1 0.0301 -6.0128 -0.2862 38 1 1.0320 -5.1619 -1.4864 39 1 0.6517 -6.8871 -1.7063 40 1 1.3224 -9.6707 -2.0292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345711377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:50 Heat of formation + Delta-G solvation = -55.425683 kcal Electronic energy + Delta-G solvation = -22899.405727 eV Core-core repulsion = 19485.731896 eV Total energy + Delta-G solvation = -3413.673831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70024 -39.10009 -38.11794 -34.93489 -34.73692 -32.67211 -32.27950 -30.92926 -29.36063 -28.61014 -26.89739 -25.30336 -23.03879 -22.11585 -20.74291 -20.43501 -19.45298 -17.82199 -17.12878 -16.97182 -16.03740 -15.68585 -15.59186 -15.13838 -14.92646 -14.37238 -14.17125 -13.99307 -13.54399 -13.21831 -12.98968 -12.83366 -12.60396 -12.47812 -12.18836 -12.12925 -11.66921 -11.39503 -11.24171 -11.09025 -10.98628 -10.78075 -10.38909 -10.32821 -10.28593 -9.86633 -9.19200 -9.11868 -8.61891 -8.56534 -8.02859 -7.97853 -6.16911 -4.26702 1.35466 1.53584 2.50676 3.04628 3.21877 3.27547 3.28081 3.30633 3.80464 4.17539 4.37946 4.60906 4.78036 4.94840 5.03043 5.15411 5.16975 5.19049 5.29280 5.44528 5.51802 5.56520 5.62357 5.74264 5.79438 6.13791 6.35904 6.46790 6.60473 6.66084 6.74555 6.86591 7.07759 7.13470 7.33622 7.38950 7.49534 7.63699 7.85394 8.00457 8.09484 8.59593 8.72621 9.05797 9.41195 10.88901 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.003880 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.998680 B = 7214.091709 C = 8039.856520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.533 6.533 4 N -0.669 5.669 5 C 0.156 3.844 6 C -0.121 4.121 7 C -0.109 4.109 8 C -0.134 4.134 9 C -0.092 4.092 10 C -0.079 4.079 11 C -0.109 4.109 12 C 0.496 3.504 13 O -0.544 6.544 14 N -0.710 5.710 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.536 4.536 19 H 0.060 0.940 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.413 0.587 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.389 0.611 37 H 0.026 0.974 38 H 0.013 0.987 39 H 0.090 0.910 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 14.486 6.041 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.410 6.410 4 N -0.314 5.314 5 C 0.062 3.938 6 C -0.141 4.141 7 C -0.128 4.128 8 C -0.152 4.152 9 C -0.110 4.110 10 C -0.082 4.082 11 C -0.149 4.149 12 C 0.280 3.720 13 O -0.422 6.422 14 N -0.358 5.358 15 C 0.163 3.837 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.574 4.574 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.250 0.750 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.221 0.779 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.109 0.891 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.410 15.178 5.035 16.054 hybrid contribution -0.589 -1.552 0.849 1.865 sum 0.821 13.626 5.884 14.865 Atomic orbital electron populations 1.21905 0.90804 1.05400 1.05158 1.21004 0.90915 0.83094 0.75064 1.90701 1.70526 1.31304 1.48434 1.43677 1.05533 1.10043 1.72140 1.17499 0.82316 0.96629 0.97315 1.21178 0.93810 0.99231 0.99866 1.20984 0.93930 0.98608 0.99233 1.21048 0.99696 0.95119 0.99374 1.20806 0.92410 0.98195 0.99610 1.19144 0.94064 0.95781 0.99201 1.20718 1.01231 0.94193 0.98783 1.20354 0.79317 0.83331 0.88972 1.90704 1.52572 1.78449 1.20448 1.46564 1.53564 1.20868 1.14789 1.18735 0.94552 0.83435 0.87004 0.93404 1.22074 0.98288 0.99435 1.00684 1.21175 1.49985 0.92736 0.93499 0.92135 1.24883 0.94786 0.99111 0.94870 1.69889 1.47589 1.29407 1.05169 0.86511 0.78713 0.82661 0.79223 1.20154 1.21112 1.20169 0.88430 0.88532 0.89667 0.74995 0.84604 0.86035 0.86125 0.85798 0.88975 0.88027 0.77921 0.95478 0.96789 0.89146 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.31 36.00 0.37 -1.02 16 2 C 0.51 6.39 7.78 -10.99 -0.09 6.31 16 3 O -0.53 -8.40 14.52 5.55 0.08 -8.32 16 4 N -0.67 -8.85 4.77 -9.86 -0.05 -8.89 16 5 C 0.16 2.38 6.29 -83.69 -0.53 1.85 16 6 C -0.12 -1.82 8.70 -39.39 -0.34 -2.17 16 7 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 8 C -0.13 -1.71 10.04 -39.55 -0.40 -2.11 16 9 C -0.09 -1.26 9.68 -39.61 -0.38 -1.65 16 10 C -0.08 -1.17 4.39 -104.43 -0.46 -1.63 16 11 C -0.11 -1.46 5.24 -29.04 -0.15 -1.62 16 12 C 0.50 9.07 7.47 -10.99 -0.08 8.99 16 13 O -0.54 -12.31 15.70 5.56 0.09 -12.23 16 14 N -0.71 -13.62 5.07 -54.93 -0.28 -13.90 16 15 C 0.26 6.43 2.56 -69.08 -0.18 6.26 16 16 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 17 C -0.15 -3.44 9.26 37.16 0.34 -3.10 16 18 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 19 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -24.36 11.32 55.43 0.63 -23.73 16 22 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.41 5.15 7.68 -40.82 -0.31 4.84 16 30 H 0.14 2.10 6.20 -52.49 -0.33 1.78 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.09 1.02 7.45 -51.93 -0.39 0.64 16 35 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 36 H 0.39 6.32 8.54 -40.82 -0.35 5.98 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -32.63 340.52 -7.53 -40.16 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.42 Total: 10.73 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.68 Total: -4.06 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.30 Total: -46.53 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.17 Total: -20.55 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.63 -7.53 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345711377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.266 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds