Wall clock time and date at job start Tue Mar 31 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21287 * 119.99378 * 2 1 4 4 N 1.34769 * 120.00168 * 179.97438 * 2 1 3 5 5 C 1.39928 * 120.00007 * 184.48687 * 4 2 1 6 6 C 1.38901 * 120.07183 * 325.30581 * 5 4 2 7 7 C 1.38087 * 119.92865 * 180.31895 * 6 5 4 8 8 C 1.38308 * 120.07321 * 359.67562 * 7 6 5 9 9 C 1.38260 * 120.13855 * 0.02562 * 8 7 6 10 10 C 1.38140 * 120.07115 * 0.04111 * 9 8 7 11 11 C 1.50699 * 120.03517 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47279 * 265.00534 * 11 10 9 13 13 O 1.21275 * 120.00206 * 359.72018 * 12 11 10 14 14 N 1.34778 * 119.99739 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99663 * 179.72198 * 14 12 11 16 16 H 1.09003 * 109.47143 * 35.00342 * 15 14 12 17 17 C 1.52997 * 109.47442 * 274.99726 * 15 14 12 18 18 C 1.50703 * 109.47019 * 154.99979 * 15 14 12 19 19 H 1.08003 * 120.00023 * 359.97438 * 18 15 14 20 20 C 1.37871 * 120.00237 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00024 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00204 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47402 * 59.99958 * 22 20 18 24 24 H 1.48507 * 109.47462 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47069 * 299.99942 * 22 20 18 26 26 H 1.09007 * 109.46956 * 270.00049 * 1 2 3 27 27 H 1.08997 * 109.47653 * 29.99848 * 1 2 3 28 28 H 1.09003 * 109.46824 * 150.00185 * 1 2 3 29 29 H 0.96996 * 120.00432 * 4.49236 * 4 2 1 30 30 H 1.07994 * 120.03258 * 359.97438 * 6 5 4 31 31 H 1.07995 * 119.96561 * 179.69989 * 7 6 5 32 32 H 1.07994 * 119.93420 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.96525 * 180.02562 * 9 8 7 34 34 H 1.09005 * 109.46925 * 145.00283 * 11 10 9 35 35 H 1.09002 * 109.47016 * 25.00455 * 11 10 9 36 36 H 0.96992 * 120.00431 * 359.71892 * 14 12 11 37 37 H 1.09003 * 109.47455 * 300.00425 * 17 15 14 38 38 H 1.09000 * 109.46978 * 59.99808 * 17 15 14 39 39 H 1.08996 * 109.47209 * 180.02562 * 17 15 14 40 40 H 0.97007 * 120.00188 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5769 -1.1689 0.0953 6 6 4.3163 -0.1557 -0.5014 7 6 5.6943 -0.1640 -0.4116 8 6 6.3379 -1.1759 0.2773 9 6 5.6044 -2.1825 0.8776 10 6 4.2258 -2.1808 0.7903 11 6 3.4272 -3.2786 1.4445 12 6 3.1306 -4.3553 0.4327 13 8 3.5242 -4.2401 -0.7086 14 7 2.4227 -5.4436 0.7947 15 6 2.1292 -6.4875 -0.1904 16 1 2.9695 -6.5849 -0.8779 17 6 0.8703 -6.1102 -0.9737 18 6 1.9056 -7.7985 0.5184 19 1 1.9756 -7.8492 1.5950 20 6 1.6128 -8.9335 -0.2075 21 7 1.5281 -8.8720 -1.5185 22 14 1.3350 -10.5584 0.6711 23 1 0.1896 -10.4257 1.6070 24 1 1.0388 -11.6169 -0.3275 25 1 2.5564 -10.9246 1.4324 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6982 -2.0059 -0.0649 30 1 3.8144 0.6345 -1.0397 31 1 6.2700 0.6208 -0.8795 32 1 7.4156 -1.1799 0.3464 33 1 6.1099 -2.9711 1.4152 34 1 2.4911 -2.8697 1.8249 35 1 4.0001 -3.7027 2.2691 36 1 2.1076 -5.5357 1.7074 37 1 0.0301 -6.0128 -0.2862 38 1 1.0320 -5.1619 -1.4864 39 1 0.6517 -6.8871 -1.7063 40 1 1.3224 -9.6707 -2.0292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345711377.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:49 Heat of formation + Delta-G solvation = -77.369320 kcal Electronic energy + Delta-G solvation = -22900.357274 eV Core-core repulsion = 19485.731896 eV Total energy + Delta-G solvation = -3414.625379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76791 -40.47486 -39.29787 -36.67696 -35.84397 -34.31266 -33.65559 -31.80749 -31.01587 -29.61085 -28.10107 -27.29265 -24.07199 -23.55836 -22.18329 -21.44079 -21.04917 -19.04458 -18.61296 -17.96145 -17.47934 -17.21713 -16.71389 -16.66213 -16.06094 -15.85473 -15.41666 -15.18203 -14.77564 -14.56588 -14.35211 -14.06488 -13.79929 -13.58252 -13.39779 -13.17874 -13.03699 -12.96869 -12.79680 -12.66409 -12.37834 -12.22942 -12.22056 -12.12079 -11.37814 -11.08208 -10.90014 -10.75775 -10.55212 -9.70214 -9.69288 -9.08833 -8.15331 -6.32631 0.30374 0.45597 1.46884 1.48214 1.54878 1.55943 1.84871 2.10752 2.37143 2.60795 2.99355 3.15539 3.67190 3.76890 3.92532 4.19021 4.20884 4.32804 4.39937 4.48632 4.55219 4.60706 4.70481 4.75081 4.80706 4.95547 5.02460 5.10791 5.14120 5.33663 5.43678 5.48050 5.56769 5.61491 5.64327 5.73780 5.94836 6.10684 6.14106 6.35751 6.75951 7.01833 7.03706 7.35616 7.61494 8.90283 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.003880 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.998680 B = 7214.091709 C = 8039.856520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.505 3.495 3 O -0.571 6.571 4 N -0.667 5.667 5 C 0.138 3.862 6 C -0.145 4.145 7 C -0.112 4.112 8 C -0.136 4.136 9 C -0.102 4.102 10 C -0.098 4.098 11 C -0.093 4.093 12 C 0.499 3.501 13 O -0.591 6.591 14 N -0.704 5.704 15 C 0.271 3.729 16 H -0.005 1.005 17 C -0.133 4.133 18 C -0.546 4.546 19 H 0.074 0.926 20 C 0.015 3.985 21 N -0.918 5.918 22 Si 0.969 3.031 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.272 1.272 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.416 0.584 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.406 0.594 37 H 0.044 0.956 38 H 0.015 0.985 39 H 0.062 0.938 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 14.387 8.280 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.296 3.704 3 O -0.450 6.450 4 N -0.312 5.312 5 C 0.044 3.956 6 C -0.165 4.165 7 C -0.130 4.130 8 C -0.155 4.155 9 C -0.120 4.120 10 C -0.101 4.101 11 C -0.133 4.133 12 C 0.285 3.715 13 O -0.472 6.472 14 N -0.353 5.353 15 C 0.167 3.833 16 H 0.013 0.987 17 C -0.191 4.191 18 C -0.584 4.584 19 H 0.092 0.908 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.794 3.206 23 H -0.188 1.188 24 H -0.215 1.215 25 H -0.197 1.197 26 H 0.138 0.862 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.253 0.747 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.242 0.758 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.064 15.087 7.322 16.804 hybrid contribution -0.419 -1.460 0.108 1.523 sum 0.645 13.627 7.430 15.534 Atomic orbital electron populations 1.21954 0.87074 1.06455 1.06891 1.21851 0.92605 0.82211 0.73727 1.90681 1.71678 1.32470 1.50184 1.43756 1.05010 1.10475 1.71994 1.17777 0.83350 0.96958 0.97562 1.21281 0.94881 0.99473 1.00848 1.21317 0.93470 0.99345 0.98890 1.21407 1.01202 0.94401 0.98469 1.21186 0.92397 0.98855 0.99599 1.19358 0.94765 0.96069 0.99910 1.20660 1.02954 0.92059 0.97597 1.21127 0.77683 0.83464 0.89178 1.90690 1.54131 1.79379 1.22956 1.46271 1.54043 1.20204 1.14785 1.18301 0.92707 0.84975 0.87277 0.98733 1.21878 0.98613 0.98381 1.00271 1.21543 1.49368 0.93275 0.94231 0.90761 1.25765 0.94567 1.02724 0.95446 1.70051 1.48625 1.30187 1.06765 0.85446 0.78967 0.78157 0.78047 1.18754 1.21484 1.19699 0.86186 0.87816 0.88225 0.74682 0.85851 0.83815 0.83278 0.84056 0.86213 0.85110 0.75825 0.93722 0.96630 0.91950 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.31 71.24 0.73 -1.60 16 2 C 0.51 12.40 7.78 87.66 0.68 13.08 16 3 O -0.57 -18.23 14.52 -3.05 -0.04 -18.27 16 4 N -0.67 -17.31 4.77 -303.51 -1.45 -18.76 16 5 C 0.14 4.16 6.29 38.15 0.24 4.40 16 6 C -0.14 -4.42 8.70 22.39 0.19 -4.23 16 7 C -0.11 -2.88 10.04 22.25 0.22 -2.65 16 8 C -0.14 -3.26 10.04 22.29 0.22 -3.04 16 9 C -0.10 -2.64 9.68 22.25 0.22 -2.43 16 10 C -0.10 -2.77 4.39 -19.74 -0.09 -2.86 16 11 C -0.09 -2.28 5.24 29.10 0.15 -2.13 16 12 C 0.50 17.76 7.47 87.66 0.65 18.41 16 13 O -0.59 -27.09 15.70 -3.01 -0.05 -27.13 16 14 N -0.70 -26.19 5.07 -446.09 -2.26 -28.45 16 15 C 0.27 13.29 2.56 44.24 0.11 13.40 16 16 H -0.01 -0.31 7.58 -2.39 -0.02 -0.33 16 17 C -0.13 -6.30 9.26 71.98 0.67 -5.63 16 18 C -0.55 -27.61 8.73 25.60 0.22 -27.38 16 19 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 20 C 0.02 0.78 5.30 84.65 0.45 1.23 16 21 N -0.92 -51.52 11.32 21.45 0.24 -51.28 16 22 Si 0.97 40.70 29.54 68.60 2.03 42.73 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H 0.12 1.19 8.14 -2.38 -0.02 1.18 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.42 10.01 7.68 -92.71 -0.71 9.29 16 30 H 0.12 3.99 6.20 -2.91 -0.02 3.97 16 31 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.12 2.29 7.45 -2.38 -0.02 2.27 16 35 H 0.13 2.48 8.05 -2.39 -0.02 2.46 16 36 H 0.41 12.23 8.54 -92.71 -0.79 11.44 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 40 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -73.08 340.52 2.72 -70.36 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.43 Total: 32.24 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 4.69 Total: -1.43 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -3.47 Total: -98.50 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.09 Total: -45.41 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -73.08 2.72 -70.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345711377.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.008 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds